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protocols::electron_density Namespace Reference

Classes

class  BfactorFittingMover
 mover to fit B factors More...
 
class  BfactorFittingMoverCreator
 
class  BfactorMultifunc
 Bfactor multifunc. More...
 
class  DensitySymmInfo
 scale density map intensities to match a pose's More...
 
class  DockIntoDensityMover
 The workhorse. More...
 
class  PointScoreComparator
 
class  RBfitResult
 
class  RBfitResultComparitor
 
class  RefinementResult
 
class  RefinementResultComparitor
 
class  ReportFSC
 scale density map intensities to match a pose's More...
 
class  ReportFSCCreator
 
class  ResultDB
 
class  ScaleMapIntensities
 scale density map intensities to match a pose's More...
 
class  ScaleMapIntensitiesCreator
 
struct  ScoredPoint
 
struct  ScoredPointCmptr
 
class  SetupForDensityScoringMover
 
class  SetupForDensityScoringMoverCreator
 
class  VoxelSpacingMultifunc
 Bfactor multifunc. More...
 
class  VoxelSpacingRefinementMover
 mover to fit B factors More...
 
class  VoxelSpacingRefinementMoverCreator
 

Typedefs

typedef ResultDB< RBfitResult,
RBfitResultComparitor
RBfitResultDB
 
typedef ResultDB
< RefinementResult,
RefinementResultComparitor
RefinementResultDB
 
typedef
utility::pointer::shared_ptr
< DockIntoDensityMover
DockIntoDensityMoverOP
 
typedef
utility::pointer::shared_ptr
< SetupForDensityScoringMover
SetupForDensityScoringMoverOP
 

Functions

void symmetrizeBfactors (core::pose::Pose &pose)
 helper function More...
 
static basic::Tracer TR ("protocols.electron_density.DockIntoDensityMover")
 
core::Real get_rms (core::pose::PoseOP r1, core::pose::PoseOP r2, DensitySymmInfo const &d)
 
core::Real get_rms (RefinementResult r1, RefinementResult r2, DensitySymmInfo const &d)
 
core::Real get_rot_angle (numeric::xyzMatrix< core::Real > R)
 
static basic::Tracer TR ("protocols.electron_density.util")
 
void set_pose_and_scorefxn_for_edens_scoring (core::pose::Pose &pose, core::scoring::ScoreFunction &scorefxn)
 
static basic::Tracer TR ("protocols.electron_density.util")
 
protocols::loops::Loops findLoopFromDensity (core::pose::Pose &pose, core::Real frac, int max_helix_melt, int max_strand_melt)
 
core::Real dockPoseIntoMap (core::pose::Pose &pose, std::string const &align_in)
 

Typedef Documentation

Function Documentation

core::Real protocols::electron_density::dockPoseIntoMap ( core::pose::Pose pose,
std::string const &  align_in 
)
protocols::loops::Loops protocols::electron_density::findLoopFromDensity ( core::pose::Pose pose,
core::Real  frac,
int  max_helix_melt,
int  max_strand_melt 
)
core::Real protocols::electron_density::get_rms ( core::pose::PoseOP  r1,
core::pose::PoseOP  r2,
DensitySymmInfo const &  d 
)
core::Real protocols::electron_density::get_rms ( RefinementResult  r1,
RefinementResult  r2,
DensitySymmInfo const &  d 
)
core::Real protocols::electron_density::get_rot_angle ( numeric::xyzMatrix< core::Real R)
void protocols::electron_density::set_pose_and_scorefxn_for_edens_scoring ( core::pose::Pose pose,
core::scoring::ScoreFunction scorefxn 
)
void protocols::electron_density::symmetrizeBfactors ( core::pose::Pose pose)
static basic::Tracer protocols::electron_density::TR ( "protocols.electron_density.util"  )
static
static basic::Tracer protocols::electron_density::TR ( "protocols.electron_density.util"  )
static
static basic::Tracer protocols::electron_density::TR ( "protocols.electron_density.DockIntoDensityMover"  )
static