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protocols::idealize Namespace Reference

Classes

class  IdealizeMover
 Mover class for transforming a Pose to ideal bonds of the given Pose. The idea is that this Mover stochastically picks a move-able position, forces that position into ideal geometry, and tries to use minimization to bring the coordinates back to very near their starting points. More...
 
class  IdealizeMoverCreator
 

Typedefs

typedef
utility::pointer::shared_ptr
< IdealizeMover
IdealizeMoverOP
 
typedef
utility::pointer::shared_ptr
< IdealizeMover const > 
IdealizeMoverCOP
 

Functions

static basic::Tracer TR ("protocols.idealize")
 
void dihedral_distance (pose::Pose const &pose1, pose::Pose const &pose2, utility::vector1< bool > const &use_pos, Real &avg_bb_angle_dev, Real &max_bb_angle_dev, Real &avg_chi_angle_dev, Real &max_chi_angle_dev)
 helper More...
 
void basic_idealize (pose::Pose &pose, utility::vector1< core::Size > pos_list, scoring::ScoreFunction const &scorefxn, bool const fast, bool const chainbreaks, bool const cis_omega)
 
static basic::Tracer TR ("protocols.idealize.IdealizeMover")
 

Typedef Documentation

typedef utility::pointer::shared_ptr< IdealizeMover const > protocols::idealize::IdealizeMoverCOP
typedef utility::pointer::shared_ptr< IdealizeMover > protocols::idealize::IdealizeMoverOP

Function Documentation

void protocols::idealize::basic_idealize ( pose::Pose pose,
utility::vector1< core::Size pos_list,
scoring::ScoreFunction const &  scorefxn,
bool const  fast,
bool const  chainbreaks,
bool const  cis_omega 
)
void protocols::idealize::dihedral_distance ( pose::Pose const &  pose1,
pose::Pose const &  pose2,
utility::vector1< bool > const &  use_pos,
Real avg_bb_angle_dev,
Real max_bb_angle_dev,
Real avg_chi_angle_dev,
Real max_chi_angle_dev 
)
static basic::Tracer protocols::idealize::TR ( "protocols.idealize"  )
static
static basic::Tracer protocols::idealize::TR ( "protocols.idealize.IdealizeMover"  )
static