Membrane Position Rotation Move. More...
#include <SetMembranePositionMover.hh>
Inheritance diagram for protocols::membrane::SetMembraneNormalMover:
Public Member Functions | |
| SetMembraneNormalMover () | |
| Constructors ///. More... | |
| SetMembraneNormalMover (core::Vector normal) | |
| Custom Constructor. More... | |
| SetMembraneNormalMover (SetMembraneNormalMover const &src) | |
| Copy Constructor. More... | |
| SetMembraneNormalMover & | operator= (SetMembraneNormalMover const &src) |
| Assignment Operator. More... | |
| ~SetMembraneNormalMover () override | |
| Destructor. More... | |
| std::string | get_name () const override |
| Mover Methods ///. More... | |
| void | apply (core::pose::Pose &pose) override |
| Apply Rotation to Membrane. More... | |
| protocols::moves::MoverOP | clone () const override |
| Rosetta Scripts Methods ///. More... | |
| protocols::moves::MoverOP | fresh_instance () const override |
| Create a Fresh Instance of this Mover. More... | |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override |
| Pase Rosetta Scripts Options for this Mover. More... | |
 Public Member Functions inherited from protocols::moves::Mover | |
| Mover () | |
| virtual MoverOP | create () |
| MoverCOP | get_self_ptr () const |
| MoverOP | get_self_ptr () |
| MoverCAP | get_self_weak_ptr () const |
| MoverAP | get_self_weak_ptr () |
| Mover (std::string const &type_name) | |
| sets the type for a mover; name_ has been removed (2010/05/14) More... | |
| virtual void | test_move (Pose &pose) |
| : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More... | |
| virtual bool | reinitialize_for_each_job () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More... | |
| virtual bool | reinitialize_for_new_input () const |
| Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More... | |
| MoverStatus | get_last_move_status () const |
| end parser interface, start Job Distributor interface///////////// More... | |
| void | reset_status () |
| resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More... | |
| virtual core::pose::PoseOP | get_additional_output () |
| Mechanism by which a mover may return multiple output poses from a single input pose. More... | |
| void | set_type (std::string const &setting) |
| Set the 'type' string. More... | |
| std::string | get_type () const |
| void | type (const std::string &type_in) |
| Set the 'type' string. More... | |
| std::string const & | type () const |
| Get the set 'type' string. More... | |
| virtual void | set_input_pose (PoseCOP pose) |
| setter for poses contained for rms More... | |
| virtual void | set_native_pose (PoseCOP pose) |
| setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More... | |
| PoseCOP | get_input_pose () const |
| PoseCOP | get_native_pose () const |
| void | set_current_job (protocols::jobdist::BasicJobCOP job) |
| jobdist::BasicJobCOP | get_current_job () const |
| virtual void | set_current_tag (std::string const &new_tag) |
| std::string | get_current_tag () const |
| A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More... | |
| virtual void | show (std::ostream &output=std::cout) const |
| Outputs details about the Mover, including current settings. More... | |
| virtual core::Real | last_proposal_density_ratio () |
| virtual void | clear_info () |
| Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More... | |
| virtual Strings & | info () |
| non-const accessor More... | |
| virtual Strings const & | info () const |
| const accessor More... | |
| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Private Attributes | |
| core::Vector | normal_ |
Additional Inherited Members | |
| Public Types inherited from protocols::moves::Mover | |
| typedef utility::tag::TagCOP | TagCOP |
| typedef core::pose::Pose | Pose |
| typedef core::pose::PoseCOP | PoseCOP |
| typedef std::list< std::string > | Strings |
| Static Public Member Functions inherited from protocols::moves::Mover | |
| static std::string | name () |
| static void | register_options () |
| Overload this static method if you access options within the mover. More... | |
| Protected Member Functions inherited from protocols::moves::Mover | |
| void | set_last_move_status (MoverStatus status) |
| nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More... | |
Detailed Description
Membrane Position Rotation Move.
Rotate the orientation of the membrane position to a new normal position. Applies rotation to jump
Constructor & Destructor Documentation
◆ SetMembraneNormalMover() [1/3]
| protocols::membrane::SetMembraneNormalMover::SetMembraneNormalMover | ( | ) |
◆ SetMembraneNormalMover() [2/3]
| protocols::membrane::SetMembraneNormalMover::SetMembraneNormalMover | ( | core::Vector | normal | ) |
Custom Constructor.
Specify a new normal to rotate membranes to to move this position to
Specify a new membrane normal to move this position to
◆ SetMembraneNormalMover() [3/3]
|
default |
Copy Constructor.
Make a deep copy of this mover object
◆ ~SetMembraneNormalMover()
|
overridedefault |
Destructor.
Member Function Documentation
◆ apply()
|
overridevirtual |
Apply Rotation to Membrane.
Apply Rotation move to Membrane.
Rotate the membrane to the new normal position
Rotate membrane position to new normal
Implements protocols::moves::Mover.
References core::pose::Pose::conformation(), core::conformation::Conformation::is_membrane(), core::conformation::Conformation::membrane_info(), normal_, and core::conformation::Conformation::update_membrane_position().
◆ clone()
|
overridevirtual |
Rosetta Scripts Methods ///.
Create a Clone of this mover
Reimplemented from protocols::moves::Mover.
◆ fresh_instance()
|
overridevirtual |
Create a Fresh Instance of this Mover.
Reimplemented from protocols::moves::Mover.
◆ get_name()
|
overridevirtual |
◆ operator=()
| SetMembraneNormalMover & protocols::membrane::SetMembraneNormalMover::operator= | ( | SetMembraneNormalMover const & | src | ) |
Assignment Operator.
Make a deep copy of this mover object, overriding the assignment operator
References SetMembraneNormalMover().
◆ parse_my_tag()
|
overridevirtual |
Pase Rosetta Scripts Options for this Mover.
Reimplemented from protocols::moves::Mover.
References normal_, and protocols::membrane::read_center_normal_from_tag().
Member Data Documentation
◆ normal_
|
private |
Referenced by apply(), and parse_my_tag().
The documentation for this class was generated from the following files:
- src/protocols/membrane/SetMembranePositionMover.hh
- src/protocols/membrane/SetMembranePositionMover.cc
