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core::pack::guidance_scoreterms::sap::SapConstraintOptions Class Reference

#include <SapConstraintOptions.hh>

Inheritance diagram for core::pack::guidance_scoreterms::sap::SapConstraintOptions:
Inheritance graph
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Public Member Functions

 SapConstraintOptions ()
 
SapConstraintOptionsOP clone () const
 
void sap_goal (Real goal)
 
void sap_lb_goal (Real lb_goal)
 
void packing_correction (Real adjustment)
 
void penalty_per_sap (Real penalty)
 
void full_accuracy_when_scoring (bool full_accuracy)
 
void name (std::string const &name)
 
void score_selector (select::residue_selector::ResidueSelectorCOP const &sel)
 
void sap_calculate_selector (select::residue_selector::ResidueSelectorCOP const &sel)
 
void sasa_selector (select::residue_selector::ResidueSelectorCOP const &sel)
 
void fast (bool fast)
 
void lightning (bool lightning)
 
Real sap_goal () const
 
Real sap_lb_goal () const
 
Real packing_correction () const
 
Real penalty_per_sap () const
 
bool full_accuracy_when_scoring () const
 
std::string name () const
 
select::residue_selector::ResidueSelectorCOP score_selector () const
 
select::residue_selector::ResidueSelectorCOP sap_calculate_selector () const
 
select::residue_selector::ResidueSelectorCOP sasa_selector () const
 
bool fast () const
 
bool lightning () const
 
Real transform_sap_to_score (Real score, bool approximate) const
 
void sanity_check () const
 

Private Attributes

Real sap_goal_
 
Real sap_lb_goal_
 
Real packing_correction_
 
Real penalty_per_sap_
 
core::select::residue_selector::ResidueSelectorCOP score_selector_
 
core::select::residue_selector::ResidueSelectorCOP sap_calculate_selector_
 
core::select::residue_selector::ResidueSelectorCOP sasa_selector_
 
bool fast_
 
bool lightning_
 
bool full_accuracy_when_scoring_
 
std::string name_
 

Constructor & Destructor Documentation

core::pack::guidance_scoreterms::sap::SapConstraintOptions::SapConstraintOptions ( )

Member Function Documentation

SapConstraintOptionsOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::clone ( ) const
void core::pack::guidance_scoreterms::sap::SapConstraintOptions::fast ( bool  fast)

References fast(), and fast_.

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::fast ( ) const

References fast_, and lightning_.

Referenced by fast().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::full_accuracy_when_scoring ( bool  full_accuracy)
bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::full_accuracy_when_scoring ( ) const
void core::pack::guidance_scoreterms::sap::SapConstraintOptions::lightning ( bool  lightning)

References lightning(), and lightning_.

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::lightning ( ) const

References lightning_.

Referenced by lightning().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::name ( std::string const &  name)

References name(), and name_.

std::string core::pack::guidance_scoreterms::sap::SapConstraintOptions::name ( ) const

References name_.

Referenced by name().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::packing_correction ( Real  adjustment)

References packing_correction_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::packing_correction ( ) const

References packing_correction_.

Referenced by transform_sap_to_score().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::penalty_per_sap ( Real  penalty)

References penalty_per_sap_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::penalty_per_sap ( ) const

References penalty_per_sap_.

Referenced by transform_sap_to_score().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sanity_check ( ) const

References sap_goal(), and sap_lb_goal().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_calculate_selector ( select::residue_selector::ResidueSelectorCOP const &  sel)
select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_calculate_selector ( ) const
void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_goal ( Real  goal)

References sap_goal_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_goal ( ) const

References sap_goal_.

Referenced by sanity_check(), and transform_sap_to_score().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_lb_goal ( Real  lb_goal)

References sap_lb_goal_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_lb_goal ( ) const

References sap_lb_goal_.

Referenced by sanity_check(), and transform_sap_to_score().

void core::pack::guidance_scoreterms::sap::SapConstraintOptions::sasa_selector ( select::residue_selector::ResidueSelectorCOP const &  sel)

References sasa_selector_.

select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sasa_selector ( ) const
void core::pack::guidance_scoreterms::sap::SapConstraintOptions::score_selector ( select::residue_selector::ResidueSelectorCOP const &  sel)

References score_selector_.

select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::score_selector ( ) const

References score_selector_.

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::transform_sap_to_score ( Real  score,
bool  approximate 
) const

Member Data Documentation

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::fast_
private

Referenced by fast().

bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::full_accuracy_when_scoring_
private
bool core::pack::guidance_scoreterms::sap::SapConstraintOptions::lightning_
private

Referenced by fast(), and lightning().

std::string core::pack::guidance_scoreterms::sap::SapConstraintOptions::name_
private

Referenced by name().

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::packing_correction_
private

Referenced by packing_correction().

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::penalty_per_sap_
private

Referenced by penalty_per_sap().

core::select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_calculate_selector_
private
Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_goal_
private

Referenced by sap_goal().

Real core::pack::guidance_scoreterms::sap::SapConstraintOptions::sap_lb_goal_
private

Referenced by sap_lb_goal().

core::select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::sasa_selector_
private

Referenced by sasa_selector().

core::select::residue_selector::ResidueSelectorCOP core::pack::guidance_scoreterms::sap::SapConstraintOptions::score_selector_
private

The documentation for this class was generated from the following files: