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protocols → core Relation

File in src/protocolsIncludes file in src/core
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccchemical / AA.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccid / AtomID.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccchemical / ChemicalManager.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccconformation / Conformation.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.cckinematics / MoveMap.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccpose / Pose.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccconformation / Residue.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccconformation / ResidueFactory.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccselect / residue_selector / ResidueIndexSelector.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccselect / residue_selector / ResidueSelector.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccchemical / ResidueType.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccchemical / ResidueTypeSet.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccscoring / rms_util.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccconformation / symmetry / SymmetricConformation.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccconformation / symmetry / SymmetryInfo.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.ccconformation / symmetry / util.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.hhpose / Pose.fwd.hh
cyclic_peptide / crosslinker / 1_4_BBMB_Helper.hhtypes.hh
ncbb / a3b_hbs / A3BHbsMover.ccid / AtomID.hh
ncbb / a3b_hbs / A3BHbsMover.ccscoring / constraints / AtomPairConstraint.hh
ncbb / a3b_hbs / A3BHbsMover.ccchemical / ChemicalManager.hh
ncbb / a3b_hbs / A3BHbsMover.ccconformation / Conformation.hh
ncbb / a3b_hbs / A3BHbsMover.ccscoring / constraints / ConstraintSet.hh
ncbb / a3b_hbs / A3BHbsMover.ccpose / Pose.hh
ncbb / a3b_hbs / A3BHbsMover.ccconformation / Residue.hh
ncbb / a3b_hbs / A3BHbsMover.ccchemical / ResidueType.hh
ncbb / a3b_hbs / A3BHbsMover.ccchemical / ResidueTypeSet.hh
ncbb / a3b_hbs / A3BHbsMover.cctypes.hh
ncbb / a3b_hbs / A3BHbsMover.ccconformation / util.hh
ncbb / a3b_hbs / A3BHbsMover.ccchemical / VariantType.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccscoring / constraints / AngleConstraint.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccid / AtomID.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccscoring / constraints / AtomPairConstraint.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccchemical / ChemicalManager.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccscoring / func / CircularHarmonicFunc.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccconformation / Conformation.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccscoring / constraints / ConstraintSet.fwd.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccscoring / constraints / ConstraintSet.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccscoring / constraints / DihedralConstraint.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccscoring / func / HarmonicFunc.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccchemical / Patch.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccpose / Pose.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccconformation / Residue.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccchemical / ResidueType.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccchemical / ResidueTypeFinder.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccchemical / ResidueTypeSet.hh
ncbb / a3b_hbs / A3BHbsPatcher.cctypes.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccpose / ncbb / util.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccconformation / util.hh
ncbb / a3b_hbs / A3BHbsPatcher.ccchemical / VariantType.hh
ncbb / a3b_hbs / A3BHbsPatcher.hhpose / Pose.fwd.hh
ncbb / a3b_hbs / A3BHbsPatcher.hhtypes.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccid / AtomID.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccscoring / constraints / AtomPairConstraint.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccchemical / ChemicalManager.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccconformation / Conformation.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccscoring / constraints / ConstraintSet.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccpose / Pose.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccconformation / Residue.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccchemical / ResidueType.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccchemical / ResidueTypeSet.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.cctypes.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccconformation / util.hh
ncbb / a3b_hbs / A3BHbsRandomSmallMover.ccchemical / VariantType.hh
fldsgn / potentials / AACompositionEnergy.ccscoring / EnergyMap.hh
fldsgn / potentials / AACompositionEnergy.ccscoring / methods / EnergyMethod.hh
fldsgn / potentials / AACompositionEnergy.ccpose / Pose.hh
fldsgn / potentials / AACompositionEnergy.ccconformation / Residue.hh
fldsgn / potentials / AACompositionEnergy.ccscoring / ScoreType.hh
fldsgn / potentials / AACompositionEnergy.hhchemical / AA.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / methods / ContextDependentOneBodyEnergy.hh
fldsgn / potentials / AACompositionEnergy.hhid / DOF_ID.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / EnergyMap.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / methods / EnergyMethod.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhpose / Pose.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / ScoreFunction.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhscoring / ScoreType.hh
fldsgn / potentials / AACompositionEnergy.hhid / TorsionID.fwd.hh
fldsgn / potentials / AACompositionEnergy.hhtypes.hh
fldsgn / potentials / AACompositionEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
fldsgn / potentials / AACompositionEnergyCreator.hhscoring / methods / EnergyMethodOptions.fwd.hh
fldsgn / potentials / AACompositionEnergyCreator.hhscoring / ScoreType.hh
mean_field / AAMatrix.ccpack / task / ResfileReader.hh
mean_field / AAMatrix.hhchemical / AA.hh
mean_field / AAMatrix.hhtypes.hh
mean_field / AAProb.ccconformation / Residue.hh
mean_field / AAProb.hhchemical / AA.hh
mean_field / AAProb.hhtypes.hh
evolution / AASynthesisFitnessCostFilter.ccpose / Pose.hh
evolution / AASynthesisFitnessCostFilter.ccpose / util.hh
evolution / AASynthesisFitnessCostFilter.hhpose / Pose.fwd.hh
antibody / Ab_TemplateInfo.ccimport_pose / import_pose.hh
antibody / Ab_TemplateInfo.ccpose / PDBInfo.fwd.hh
antibody / Ab_TemplateInfo.ccpose / PDBInfo.hh
antibody / Ab_TemplateInfo.hhpose / Pose.hh
frag_picker / quota / ABEGO_SS_Config.cctypes.hh
frag_picker / quota / ABEGO_SS_Config.hhtypes.hh
frag_picker / quota / ABEGO_SS_Map.cctypes.hh
frag_picker / quota / ABEGO_SS_Map.hhtypes.hh
frag_picker / quota / ABEGO_SS_Pool.cctypes.hh
frag_picker / quota / ABEGO_SS_Pool.hhtypes.hh
frag_picker / scores / ABEGO_SS_Score.ccfragment / SecondaryStructure.hh
frag_picker / scores / ABEGO_SS_Score.cctypes.hh
frag_picker / scores / ABEGO_SS_Score.hhtypes.hh
simple_filters / AbinitioBaseFilter.ccconformation / Conformation.hh
simple_filters / AbinitioBaseFilter.ccpose / extra_pose_info_util.hh
simple_filters / AbinitioBaseFilter.ccpose / Pose.hh
simple_filters / AbinitioBaseFilter.ccconformation / Residue.hh
simple_filters / AbinitioBaseFilter.ccpose / util.hh
simple_filters / AbinitioBaseFilter.hhpose / Pose.fwd.hh
simple_filters / AbinitioBaseFilter.hhtypes.hh
topology_broker / weights / AbinitioMoverWeight.hhtypes.hh
abinitio / AbrelaxApplication.ccpose / annotated_sequence.hh
abinitio / AbrelaxApplication.ccfragment / BBTorsionSRFD.hh
abinitio / AbrelaxApplication.ccscoring / constraints / BoundConstraint.hh
abinitio / AbrelaxApplication.ccpose / datacache / CacheableDataType.hh
abinitio / AbrelaxApplication.ccpose / metrics / CalculatorFactory.hh
abinitio / AbrelaxApplication.ccchemical / ChemicalManager.hh
abinitio / AbrelaxApplication.ccconformation / Conformation.hh
abinitio / AbrelaxApplication.ccscoring / constraints / ConstraintFactory.hh
abinitio / AbrelaxApplication.ccscoring / constraints / ConstraintIO.hh
abinitio / AbrelaxApplication.ccscoring / constraints / ConstraintSet.hh
abinitio / AbrelaxApplication.ccenergy_methods / ContactOrderEnergy.hh
abinitio / AbrelaxApplication.ccio / raw_data / DisulfideFile.hh
abinitio / AbrelaxApplication.ccscoring / Energies.hh
abinitio / AbrelaxApplication.ccpose / extra_pose_info_util.hh
abinitio / AbrelaxApplication.ccfragment / FragData.hh
abinitio / AbrelaxApplication.ccfragment / FragmentIO.hh
abinitio / AbrelaxApplication.ccfragment / Frame.hh
abinitio / AbrelaxApplication.ccfragment / FrameIterator.hh
abinitio / AbrelaxApplication.ccfragment / FrameIteratorWorker_.hh
abinitio / AbrelaxApplication.ccfragment / FrameList.hh
abinitio / AbrelaxApplication.ccscoring / func / Func.hh
abinitio / AbrelaxApplication.ccscoring / func / FuncFactory.hh
abinitio / AbrelaxApplication.ccscoring / func / HarmonicFunc.hh
abinitio / AbrelaxApplication.ccimport_pose / import_pose.hh
abinitio / AbrelaxApplication.ccscoring / MembraneTopology.hh
abinitio / AbrelaxApplication.cckinematics / MoveMap.hh
abinitio / AbrelaxApplication.ccscoring / dssp / PairingsList.hh
abinitio / AbrelaxApplication.ccpose / Pose.hh
abinitio / AbrelaxApplication.ccscoring / ScoreFunction.fwd.hh
abinitio / AbrelaxApplication.ccscoring / ScoreFunctionFactory.hh
abinitio / AbrelaxApplication.ccscoring / ScoreType.hh
abinitio / AbrelaxApplication.ccfragment / SecondaryStructure.hh
abinitio / AbrelaxApplication.ccsequence / Sequence.hh
abinitio / AbrelaxApplication.ccid / SequenceMapping.hh
abinitio / AbrelaxApplication.ccio / silent / silent.fwd.hh
abinitio / AbrelaxApplication.ccio / silent / SilentFileData.hh
abinitio / AbrelaxApplication.ccio / silent / SilentFileOptions.hh
abinitio / AbrelaxApplication.ccio / silent / SilentStructFactory.hh
abinitio / AbrelaxApplication.ccscoring / SS_Killhairpins_Info.hh
abinitio / AbrelaxApplication.ccscoring / dssp / StrandPairing.hh
abinitio / AbrelaxApplication.ccutil / SwitchResidueTypeSet.hh
abinitio / AbrelaxApplication.cctypes.hh
abinitio / AbrelaxApplication.ccsequence / util.hh
abinitio / AbrelaxApplication.ccscoring / constraints / util.hh
abinitio / AbrelaxApplication.ccfragment / util.hh
abinitio / AbrelaxApplication.ccpose / util.hh
abinitio / AbrelaxApplication.cckinematics / util.hh
abinitio / AbrelaxApplication.hhscoring / constraints / ConstraintSet.fwd.hh
abinitio / AbrelaxApplication.hhfragment / FragSet.fwd.hh
abinitio / AbrelaxApplication.hhpose / Pose.fwd.hh
abinitio / AbrelaxApplication.hhscoring / ScoreFunction.fwd.hh
abinitio / AbrelaxApplication.hhfragment / SecondaryStructure.fwd.hh
abinitio / AbrelaxApplication.hhio / silent / SilentFileData.fwd.hh
abinitio / AbrelaxApplication.hhio / silent / SilentFileOptions.fwd.hh
abinitio / AbrelaxApplication.hhtypes.hh
abinitio / AbrelaxMover.ccscoring / constraints / ConstraintSet.hh
abinitio / AbrelaxMover.cckinematics / FoldTree.hh
abinitio / AbrelaxMover.cckinematics / MoveMap.hh
abinitio / AbrelaxMover.ccpose / Pose.hh
abinitio / AbrelaxMover.ccscoring / ScoreFunction.hh
abinitio / AbrelaxMover.ccscoring / ScoreFunctionFactory.hh
abinitio / AbrelaxMover.cckinematics / ShortestPathInFoldTree.hh
abinitio / AbrelaxMover.hhpose / Pose.fwd.hh
abinitio / AbrelaxMover.hhtypes.hh
abinitio / abscript / AbscriptLoopCloserCM.ccenvironment / DofPassport.hh
abinitio / abscript / AbscriptLoopCloserCM.ccfragment / FragmentIO.hh
abinitio / abscript / AbscriptLoopCloserCM.ccfragment / FragSet.hh
abinitio / abscript / AbscriptLoopCloserCM.cckinematics / MoveMap.hh
abinitio / abscript / AbscriptLoopCloserCM.ccscoring / ScoreFunctionFactory.hh
abinitio / abscript / AbscriptLoopCloserCM.ccselect / residue_selector / TrueResidueSelector.hh
abinitio / abscript / AbscriptLoopCloserCM.ccselect / residue_selector / util.hh
abinitio / abscript / AbscriptLoopCloserCM.hhconformation / Conformation.fwd.hh
abinitio / abscript / AbscriptLoopCloserCM.hhkinematics / FoldTree.fwd.hh
abinitio / abscript / AbscriptLoopCloserCM.hhfragment / FragSet.hh
abinitio / abscript / AbscriptLoopCloserCM.hhkinematics / MoveMap.hh
abinitio / abscript / AbscriptLoopCloserCM.hhselect / residue_selector / ResidueSelector.hh
abinitio / abscript / AbscriptLoopCloserCM.hhscoring / ScoreFunction.hh
abinitio / abscript / AbscriptMover.ccscoring / constraints / ConstraintSet.hh
abinitio / abscript / AbscriptMover.ccscoring / Energies.hh
abinitio / abscript / AbscriptMover.ccfragment / FragmentIO.hh
abinitio / abscript / AbscriptMover.ccfragment / FragSet.hh
abinitio / abscript / AbscriptMover.cckinematics / MoveMap.hh
abinitio / abscript / AbscriptMover.ccpose / Pose.hh
abinitio / abscript / AbscriptMover.ccselect / residue_selector / ResidueSelector.fwd.hh
abinitio / abscript / AbscriptMover.ccscoring / ScoreFunction.hh
abinitio / abscript / AbscriptMover.ccscoring / ScoreFunctionFactory.hh
abinitio / abscript / AbscriptMover.ccscoring / ScoreType.hh
abinitio / abscript / AbscriptMover.ccfragment / SecondaryStructure.hh
abinitio / abscript / AbscriptMover.cckinematics / ShortestPathInFoldTree.hh
abinitio / abscript / AbscriptMover.hhpose / Pose.hh
abinitio / abscript / AbscriptMover.hhselect / residue_selector / ResidueSelector.fwd.hh
abinitio / abscript / AbscriptMover.hhscoring / ScoreFunction.hh
abinitio / abscript / AbscriptStageMover.ccscoring / constraints / ConstraintSet.hh
abinitio / abscript / AbscriptStageMover.ccscoring / Energies.hh
abinitio / abscript / AbscriptStageMover.ccscoring / methods / EnergyMethodOptions.hh
abinitio / abscript / AbscriptStageMover.ccpose / Pose.hh
abinitio / abscript / AbscriptStageMover.ccscoring / ScoreFunction.hh
abinitio / abscript / AbscriptStageMover.hhscoring / ScoreFunction.hh
loop_modeling / utilities / AcceptanceCheck.ccchemical / AtomType.hh
loop_modeling / utilities / AcceptanceCheck.ccpose / Pose.hh
loop_modeling / utilities / AcceptanceCheck.ccconformation / Residue.hh
loop_modeling / utilities / AcceptanceCheck.ccscoring / ScoreFunction.hh
loop_modeling / utilities / AcceptanceCheck.hhpose / Pose.fwd.hh
relax / AcceptToBestMover.ccpose / datacache / CacheableDataType.hh
relax / AcceptToBestMover.ccpose / Pose.hh
relax / AcceptToBestMover.ccscoring / ScoreFunction.hh
relax / AcceptToBestMover.ccpose / util.hh
relax / AcceptToBestMover.hhpose / Pose.fwd.hh
relax / AcceptToBestMover.hhscoring / ScoreFunction.fwd.hh
relax / AcceptToBestMover.hhtypes.hh
match / downstream / ActiveSiteGrid.ccconformation / Residue.hh
match / downstream / ActiveSiteGrid.hhconformation / Residue.fwd.hh
match / downstream / ActiveSiteGrid.hhtypes.hh
frag_picker / scores / AdaptiveScoreHistogram.hhtypes.hh
domain_assembly / AddAssemblyConstraints.ccscoring / constraints / AtomPairConstraint.hh
domain_assembly / AddAssemblyConstraints.ccscoring / constraints / Constraint.hh
domain_assembly / AddAssemblyConstraints.ccscoring / constraints / ConstraintSet.hh
domain_assembly / AddAssemblyConstraints.ccscoring / func / Func.hh
domain_assembly / AddAssemblyConstraints.cckinematics / Jump.hh
domain_assembly / AddAssemblyConstraints.ccscoring / func / LinearPenaltyFunction.hh
domain_assembly / AddAssemblyConstraints.ccpose / PDBInfo.hh
domain_assembly / AddAssemblyConstraints.ccpose / Pose.hh
domain_assembly / AddAssemblyConstraints.ccconformation / Residue.hh
domain_assembly / AddAssemblyConstraints.cctypes.hh
domain_assembly / AddAssemblyConstraints.hhtypes.hh
simple_moves / AddCavitiesMover.ccchemical / AA.hh
simple_moves / AddCavitiesMover.ccpose / datacache / CacheableDataType.hh
simple_moves / AddCavitiesMover.ccpose / datacache / CacheablePoseRawPtr.hh
simple_moves / AddCavitiesMover.ccchemical / ChemicalManager.hh
simple_moves / AddCavitiesMover.ccscoring / packstat / compute_sasa.hh
simple_moves / AddCavitiesMover.ccscoring / constraints / CoordinateConstraint.hh
simple_moves / AddCavitiesMover.ccscoring / func / Func.hh
simple_moves / AddCavitiesMover.ccscoring / func / HarmonicFunc.hh
simple_moves / AddCavitiesMover.ccpose / Pose.hh
simple_moves / AddCavitiesMover.ccconformation / Residue.hh
simple_moves / AddCavitiesMover.ccconformation / ResidueFactory.hh
simple_moves / AddCavitiesMover.ccchemical / ResidueTypeSet.hh
simple_moves / AddCavitiesMover.ccscoring / packstat / types.hh
simple_moves / AddCavitiesMover.ccpose / util.hh
simple_moves / AddCavitiesMover.hhscoring / packstat / CavityBall.hh
simple_moves / AddCavitiesMover.hhscoring / packstat / compute_sasa.hh
simple_moves / AddCavitiesMover.hhconformation / Residue.fwd.hh
simple_moves / AddCavitiesMover.hhscoring / packstat / types.hh
antibody / task_operations / AddCDRProfileSetsOperation.ccchemical / AA.hh
antibody / task_operations / AddCDRProfileSetsOperation.ccpack / task / operation / task_op_schemas.hh
antibody / task_operations / AddCDRProfileSetsOperation.ccpack / task / operation / TaskOperation.hh
antibody / task_operations / AddCDRProfileSetsOperation.ccpack / task / operation / TaskOperations.hh
antibody / task_operations / AddCDRProfileSetsOperation.hhpack / task / operation / TaskOperation.hh
antibody / task_operations / AddCDRProfileSetsOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
antibody / task_operations / AddCDRProfilesOperation.ccpack / task / operation / task_op_schemas.hh
antibody / task_operations / AddCDRProfilesOperation.ccpack / task / operation / TaskOperations.hh
antibody / task_operations / AddCDRProfilesOperation.hhchemical / AA.hh
antibody / task_operations / AddCDRProfilesOperation.hhpack / task / operation / TaskOperation.hh
antibody / task_operations / AddCDRProfilesOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
protein_interface_design / movers / AddChainBreak.cckinematics / FoldTree.hh
protein_interface_design / movers / AddChainBreak.ccpose / Pose.hh
protein_interface_design / movers / AddChainBreak.ccpose / selection.hh
protein_interface_design / movers / AddChainBreak.ccpose / variant_util.hh
protein_interface_design / movers / AddChainBreak.ccchemical / VariantType.hh
protein_interface_design / movers / AddChainBreak.hhpose / Pose.fwd.hh
protein_interface_design / movers / AddChainBreak.hhtypes.hh
simple_moves / AddChainMover.ccconformation / Conformation.hh
simple_moves / AddChainMover.ccpose / extra_pose_info_util.hh
simple_moves / AddChainMover.cckinematics / FoldTree.hh
simple_moves / AddChainMover.ccimport_pose / import_pose.hh
simple_moves / AddChainMover.ccpose / PDBInfo.hh
simple_moves / AddChainMover.ccpose / Pose.hh
simple_moves / AddChainMover.ccscoring / ScoreFunction.hh
simple_moves / AddChainMover.ccpose / subpose_manipulation_util.hh
simple_moves / AddChainMover.ccpose / util.hh
simple_moves / AddChainMover.hhpose / Pose.fwd.hh
simple_moves / AddChainMover.hhscoring / ScoreFunction.fwd.hh
aa_composition / AddCompositionConstraintMover.ccscoring / aa_composition_energy / AACompositionConstraint.hh
aa_composition / AddCompositionConstraintMover.ccscoring / constraints / Constraint.hh
aa_composition / AddCompositionConstraintMover.ccscoring / constraints / ConstraintIO.hh
aa_composition / AddCompositionConstraintMover.ccscoring / constraints / ConstraintSet.hh
aa_composition / AddCompositionConstraintMover.ccpose / Pose.hh
aa_composition / AddCompositionConstraintMover.ccselect / residue_selector / ResidueSelector.hh
aa_composition / AddCompositionConstraintMover.ccselect / residue_selector / util.hh
aa_composition / AddCompositionConstraintMover.hhscoring / aa_composition_energy / AACompositionConstraint.fwd.hh
aa_composition / AddCompositionConstraintMover.hhscoring / constraints / ConstraintSet.fwd.hh
aa_composition / AddCompositionConstraintMover.hhselect / residue_selector / ResidueSelector.fwd.hh
constraint_generator / AddConstraints.ccpose / Pose.hh
constraint_generator / AddConstraints.hhpose / Pose.fwd.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccscoring / constraints / AtomPairConstraint.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccscoring / constraints / BoundConstraint.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccscoring / constraints / Constraint.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccscoring / constraints / CoordinateConstraint.hh
constraint_movers / AddConstraintsToCurrentConformationMover.cckinematics / FoldTree.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccscoring / func / HarmonicFunc.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccpose / Pose.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccconformation / Residue.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccconformation / ResidueFactory.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccchemical / ResidueType.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccchemical / ResidueTypeSet.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccscoring / func / ScalarWeightedFunc.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccscoring / func / SOGFunc.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccconformation / symmetry / SymmetricConformation.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccconformation / symmetry / SymmetryInfo.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccpack / task / TaskFactory.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccpack / task / operation / TaskOperation.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccselect / residue_selector / TrueResidueSelector.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccselect / residue_selector / util.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccpose / symmetry / util.hh
constraint_movers / AddConstraintsToCurrentConformationMover.ccpose / util.hh
constraint_movers / AddConstraintsToCurrentConformationMover.hhscoring / constraints / Constraint.fwd.hh
constraint_movers / AddConstraintsToCurrentConformationMover.hhscoring / func / Func.fwd.hh
constraint_movers / AddConstraintsToCurrentConformationMover.hhpack / task / PackerTask.fwd.hh
constraint_movers / AddConstraintsToCurrentConformationMover.hhselect / residue_selector / ResidueSelector.fwd.hh
constraint_movers / AddConstraintsToCurrentConformationMover.hhpack / task / TaskFactory.fwd.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccscoring / methods / ContextDependentLRTwoBodyEnergy.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccscoring / methods / ContextIndependentLRTwoBodyEnergy.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccscoring / Energies.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccpack / task / PackerTask.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccio / pdb / pdb_writer.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccpose / PDBInfo.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccconformation / Residue.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccpack / rotamer_set / RotamerSet.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccpack / rotamer_set / RotamerSetFactory.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccscoring / ScoreFunction.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.ccpose / util.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.hhpack / task / PackerTask.fwd.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.hhpose / Pose.fwd.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.hhconformation / Residue.fwd.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.hhpack / rotamer_set / RotamerSet.fwd.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.hhpack / rotamer_set / RotamerSetOperation.hh
toolbox / rotamer_set_operations / AddGood2BPairEnergyRotamers.hhscoring / ScoreFunction.fwd.hh
aa_composition / AddHelixSequenceConstraintsMover.ccscoring / aa_composition_energy / AACompositionConstraint.hh
aa_composition / AddHelixSequenceConstraintsMover.ccscoring / constraints / Constraint.hh
aa_composition / AddHelixSequenceConstraintsMover.ccpose / Pose.hh
aa_composition / AddHelixSequenceConstraintsMover.ccselect / residue_selector / ResidueIndexSelector.hh
aa_composition / AddHelixSequenceConstraintsMover.ccselect / residue_selector / ResidueSelector.hh
aa_composition / AddHelixSequenceConstraintsMover.ccselect / residue_selector / util.hh
aa_composition / AddHelixSequenceConstraintsMover.hhpose / Pose.fwd.hh
aa_composition / AddHelixSequenceConstraintsMover.hhselect / residue_selector / ResidueSelector.fwd.hh
ligand_docking / AddHydrogen.ccchemical / ChemicalManager.hh
ligand_docking / AddHydrogen.ccconformation / Conformation.hh
ligand_docking / AddHydrogen.cckinematics / Jump.hh
ligand_docking / AddHydrogen.ccchemical / MutableResidueType.hh
ligand_docking / AddHydrogen.ccchemical / PatchOperation.hh
ligand_docking / AddHydrogen.ccpose / Pose.hh
ligand_docking / AddHydrogen.ccchemical / PoseResidueTypeSet.hh
ligand_docking / AddHydrogen.ccconformation / Residue.hh
ligand_docking / AddHydrogen.ccchemical / ResidueConnection.hh
ligand_docking / AddHydrogen.ccchemical / ResidueTypeSet.hh
ligand_docking / AddHydrogen.cctypes.hh
ligand_docking / AddHydrogen.hhpose / Pose.fwd.hh
ligand_docking / AddHydrogens.ccpose / chains_util.hh
ligand_docking / AddHydrogens.ccconformation / Conformation.hh
ligand_docking / AddHydrogens.ccpose / Pose.hh
ligand_docking / AddHydrogens.cctypes.hh
ligand_docking / AddHydrogens.ccpose / util.hh
ligand_docking / AddHydrogens.hhpose / Pose.fwd.hh
constraints_additional / AdditionalConstraintCreators.ccscoring / constraints / NamedAtomPairConstraint.hh
constraints_additional / AdditionalConstraintCreators.hhscoring / constraints / ConstraintCreator.hh
rosetta_scripts / AdditionalOutputWrapper.ccpose / datacache / CacheableDataType.hh
rosetta_scripts / AdditionalOutputWrapper.ccpose / Pose.hh
rosetta_scripts / AdditionalOutputWrapper.hhpose / Pose.fwd.hh
rosetta_scripts / AdditionalOutputWrapper.hhpose / Pose.hh
simple_moves / AddJobPairData.ccpose / chains_util.hh
simple_moves / AddJobPairData.ccpose / util.hh
enzdes / AddLigandMotifRotamersOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
membrane / AddMembraneMover.ccchemical / ChemicalManager.hh
membrane / AddMembraneMover.ccconformation / Conformation.hh
membrane / AddMembraneMover.cckinematics / FoldTree.hh
membrane / AddMembraneMover.ccconformation / membrane / ImplicitLipidInfo.hh
membrane / AddMembraneMover.ccconformation / membrane / MembraneInfo.hh
membrane / AddMembraneMover.ccconformation / membrane / MembraneParams.hh
membrane / AddMembraneMover.ccpose / PDBInfo.hh
membrane / AddMembraneMover.ccpose / PDBPoseMap.hh
membrane / AddMembraneMover.ccpose / Pose.hh
membrane / AddMembraneMover.ccconformation / Residue.hh
membrane / AddMembraneMover.ccconformation / ResidueFactory.hh
membrane / AddMembraneMover.ccpose / ResidueIndexDescription.hh
membrane / AddMembraneMover.ccchemical / ResidueProperty.hh
membrane / AddMembraneMover.ccchemical / ResidueTypeSet.hh
membrane / AddMembraneMover.ccscoring / ScoreFunction.hh
membrane / AddMembraneMover.ccscoring / ScoreFunctionFactory.hh
membrane / AddMembraneMover.ccpose / selection.hh
membrane / AddMembraneMover.ccconformation / membrane / Span.hh
membrane / AddMembraneMover.ccconformation / membrane / SpanningTopology.hh
membrane / AddMembraneMover.cctypes.hh
membrane / AddMembraneMover.ccpose / util.hh
membrane / AddMembraneMover.hhpose / Pose.fwd.hh
membrane / AddMembraneMover.hhpose / ResidueIndexDescription.fwd.hh
membrane / AddMembraneMover.hhconformation / membrane / Span.hh
membrane / AddMembraneMover.hhconformation / membrane / SpanningTopology.fwd.hh
membrane / AddMembraneMover.hhtypes.hh
membrane / AddMembraneSpanConstraint.ccconformation / Conformation.hh
membrane / AddMembraneSpanConstraint.ccscoring / constraints / Constraint.hh
membrane / AddMembraneSpanConstraint.ccscoring / constraints / ConstraintSet.hh
membrane / AddMembraneSpanConstraint.ccscoring / func / LinearPenaltyFunction.hh
membrane / AddMembraneSpanConstraint.ccconformation / membrane / MembraneInfo.hh
membrane / AddMembraneSpanConstraint.ccscoring / constraints / MembraneSpanConstraint.hh
membrane / AddMembraneSpanConstraint.ccpose / Pose.hh
membrane / AddMembraneSpanConstraint.ccpose / util.hh
membrane / AddMembraneSpanConstraint.hhpose / Pose.fwd.hh
membrane / AddMembraneSpanConstraint.hhtypes.hh
membrane / AddMembraneSpanTermZConstraint.ccconformation / Conformation.hh
membrane / AddMembraneSpanTermZConstraint.ccscoring / constraints / Constraint.hh
membrane / AddMembraneSpanTermZConstraint.ccscoring / constraints / ConstraintSet.hh
membrane / AddMembraneSpanTermZConstraint.ccscoring / func / LinearPenaltyFunction.hh
membrane / AddMembraneSpanTermZConstraint.ccconformation / membrane / MembraneInfo.hh
membrane / AddMembraneSpanTermZConstraint.ccscoring / constraints / MembraneSpanTermZConstraint.hh
membrane / AddMembraneSpanTermZConstraint.ccpose / Pose.hh
membrane / AddMembraneSpanTermZConstraint.ccpose / util.hh
membrane / AddMembraneSpanTermZConstraint.hhpose / Pose.fwd.hh
membrane / AddMembraneSpanTermZConstraint.hhtypes.hh
aa_composition / AddMHCEpitopeConstraintMover.ccscoring / constraints / Constraint.hh
aa_composition / AddMHCEpitopeConstraintMover.ccscoring / constraints / ConstraintIO.hh
aa_composition / AddMHCEpitopeConstraintMover.ccscoring / constraints / ConstraintSet.hh
aa_composition / AddMHCEpitopeConstraintMover.ccscoring / mhc_epitope_energy / MHCEpitopeConstraint.hh
aa_composition / AddMHCEpitopeConstraintMover.ccscoring / mhc_epitope_energy / MHCEpitopeEnergySetup.hh
aa_composition / AddMHCEpitopeConstraintMover.ccpose / Pose.hh
aa_composition / AddMHCEpitopeConstraintMover.ccselect / residue_selector / ResidueSelector.hh
aa_composition / AddMHCEpitopeConstraintMover.ccselect / residue_selector / util.hh
aa_composition / AddMHCEpitopeConstraintMover.hhscoring / constraints / ConstraintSet.fwd.hh
aa_composition / AddMHCEpitopeConstraintMover.hhscoring / mhc_epitope_energy / MHCEpitopeConstraint.fwd.hh
aa_composition / AddMHCEpitopeConstraintMover.hhselect / residue_selector / ResidueSelector.fwd.hh
stepwise / monte_carlo / mover / AddMover.cckinematics / FoldTree.hh
stepwise / monte_carlo / mover / AddMover.ccpose / full_model_info / FullModelInfo.hh
stepwise / monte_carlo / mover / AddMover.cckinematics / Jump.hh
stepwise / monte_carlo / mover / AddMover.ccpose / Pose.hh
stepwise / monte_carlo / mover / AddMover.ccconformation / ResidueFactory.hh
stepwise / monte_carlo / mover / AddMover.ccchemical / ResidueTypeSet.hh
stepwise / monte_carlo / mover / AddMover.ccscoring / ScoreFunction.hh
stepwise / monte_carlo / mover / AddMover.cctypes.hh
stepwise / monte_carlo / mover / AddMover.ccpose / full_model_info / util.hh
stepwise / monte_carlo / mover / AddMover.ccchemical / rna / util.hh
stepwise / monte_carlo / mover / AddMover.ccpose / variant_util.hh
stepwise / monte_carlo / mover / AddMover.ccchemical / VariantType.hh
stepwise / monte_carlo / mover / AddMover.hhpose / Pose.fwd.hh
stepwise / monte_carlo / mover / AddMover.hhconformation / Residue.fwd.hh
stepwise / monte_carlo / mover / AddMover.hhchemical / ResidueTypeSet.fwd.hh
stepwise / monte_carlo / mover / AddMover.hhscoring / ScoreFunction.fwd.hh
stepwise / monte_carlo / mover / AddMover.hhtypes.hh
membrane / AddMPLigandMover.ccpose / chains_util.hh
membrane / AddMPLigandMover.ccconformation / Conformation.hh
membrane / AddMPLigandMover.cckinematics / FoldTree.hh
membrane / AddMPLigandMover.ccconformation / membrane / MembraneInfo.hh
membrane / AddMPLigandMover.ccpose / Pose.hh
membrane / AddMPLigandMover.cctypes.hh
membrane / AddMPLigandMover.ccpose / util.hh
membrane / AddMPLigandMover.hhpose / Pose.hh
membrane / AddMPLigandMover.hhtypes.hh
aa_composition / AddNetChargeConstraintMover.ccscoring / constraints / Constraint.hh
aa_composition / AddNetChargeConstraintMover.ccscoring / constraints / ConstraintIO.hh
aa_composition / AddNetChargeConstraintMover.ccscoring / constraints / ConstraintSet.hh
aa_composition / AddNetChargeConstraintMover.ccscoring / netcharge_energy / NetChargeConstraint.hh
aa_composition / AddNetChargeConstraintMover.ccpose / Pose.hh
aa_composition / AddNetChargeConstraintMover.ccselect / residue_selector / ResidueSelector.hh
aa_composition / AddNetChargeConstraintMover.ccselect / residue_selector / util.hh
aa_composition / AddNetChargeConstraintMover.hhscoring / constraints / ConstraintSet.fwd.hh
aa_composition / AddNetChargeConstraintMover.hhscoring / netcharge_energy / NetChargeConstraint.fwd.hh
aa_composition / AddNetChargeConstraintMover.hhselect / residue_selector / ResidueSelector.fwd.hh
stepwise / monte_carlo / mover / AddOrDeleteMover.ccpose / full_model_info / FullModelInfo.hh
stepwise / monte_carlo / mover / AddOrDeleteMover.ccpose / Pose.hh
stepwise / monte_carlo / mover / AddOrDeleteMover.cctypes.hh
stepwise / monte_carlo / mover / AddOrDeleteMover.ccpose / util.hh
stepwise / monte_carlo / mover / AddOrDeleteMover.ccpose / full_model_info / util.hh
stepwise / monte_carlo / mover / AddOrDeleteMover.ccchemical / VariantType.hh
stepwise / monte_carlo / mover / AddOrDeleteMover.hhpose / Pose.fwd.hh
stepwise / monte_carlo / mover / AddOrDeleteMover.hhtypes.hh
enzdes / AddorRemoveCsts.ccchemical / ChemicalManager.hh
enzdes / AddorRemoveCsts.ccpose / Pose.hh
enzdes / AddorRemoveCsts.ccconformation / Residue.hh
enzdes / AddorRemoveCsts.ccscoring / ScoreFunction.hh
enzdes / AddorRemoveCsts.hhpose / Pose.fwd.hh
enzdes / AddorRemoveCsts.hhscoring / ScoreFunction.fwd.hh
enzdes / AddorRemoveCsts.hhtypes.hh
simple_moves / AddPDBInfoMover.ccid / AtomID.hh
simple_moves / AddPDBInfoMover.ccpose / PDBInfo.hh
simple_moves / AddPDBInfoMover.ccpose / Pose.hh
simple_moves / AddPDBInfoMover.ccscoring / ScoreFunction.hh
simple_moves / AddPDBInfoMover.ccpose / util.hh
simple_moves / AddPDBInfoMover.hhpose / Pose.fwd.hh
simple_moves / AddPDBInfoMover.hhscoring / ScoreFunction.hh
simple_moves / AddPDBInfoMover.hhtypes.hh
simple_moves / AddResidueCouplingConstraint.ccchemical / ChemicalManager.hh
simple_moves / AddResidueCouplingConstraint.ccscoring / constraints / KofNConstraint.hh
simple_moves / AddResidueCouplingConstraint.ccpose / Pose.hh
simple_moves / AddResidueCouplingConstraint.ccscoring / constraints / ResidueCouplingConstraint.hh
simple_moves / AddResidueCouplingConstraint.ccchemical / ResidueType.hh
simple_moves / AddResidueCouplingConstraint.ccchemical / ResidueTypeSet.hh
simple_moves / AddResidueCouplingConstraint.ccscoring / ScoreFunction.hh
simple_moves / AddResidueLabelMover.ccpose / PDBInfo.hh
simple_moves / AddResidueLabelMover.ccpose / Pose.hh
simple_moves / AddResidueLabelMover.ccselect / residue_selector / ResidueSelector.hh
simple_moves / AddResidueLabelMover.ccselect / residue_selector / ResidueSelectorFactory.hh
simple_moves / AddResidueLabelMover.ccconformation / symmetry / SymmetryInfo.hh
simple_moves / AddResidueLabelMover.ccselect / residue_selector / TrueResidueSelector.hh
simple_moves / AddResidueLabelMover.ccpose / symmetry / util.hh
simple_moves / AddResidueLabelMover.ccselect / residue_selector / util.hh
simple_moves / AddResidueLabelMover.ccpose / util.hh
simple_moves / AddResidueLabelMover.hhpose / Pose.fwd.hh
simple_moves / AddResidueLabelMover.hhselect / residue_selector / ResidueSelector.fwd.hh
enzdes / AddRigidBodyLigandConfsCreator.hhpack / task / operation / TaskOperationCreator.hh
simple_moves / AddSapConstraintMover.ccpose / Pose.hh
simple_moves / AddSapConstraintMover.ccselect / residue_selector / ResidueSelector.hh
simple_moves / AddSapConstraintMover.ccpack / guidance_scoreterms / sap / SapConstraint.hh
simple_moves / AddSapConstraintMover.ccpack / guidance_scoreterms / sap / SapConstraintOptions.hh
simple_moves / AddSapConstraintMover.ccselect / residue_selector / util.hh
simple_moves / AddSapConstraintMover.hhpose / Pose.fwd.hh
simple_moves / AddSapConstraintMover.hhselect / residue_selector / ResidueSelector.fwd.hh
simple_moves / AddSapConstraintMover.hhpack / guidance_scoreterms / sap / SapConstraintOptions.fwd.hh
simple_moves / AddSapMathConstraintMover.ccpose / Pose.hh
simple_moves / AddSapMathConstraintMover.ccselect / residue_selector / ResidueSelector.hh
simple_moves / AddSapMathConstraintMover.ccpack / guidance_scoreterms / sap / SapConstraint.hh
simple_moves / AddSapMathConstraintMover.ccpack / guidance_scoreterms / sap / SapConstraintOptions.hh
simple_moves / AddSapMathConstraintMover.ccselect / residue_selector / util.hh
simple_moves / AddSapMathConstraintMover.hhpose / Pose.fwd.hh
simple_moves / AddSapMathConstraintMover.hhpack / guidance_scoreterms / sap / SapMathConstraint.hh
denovo_design / movers / AddSegmentDataMover.ccpose / Pose.hh
denovo_design / movers / AddSegmentDataMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccconformation / Conformation.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccscoring / constraints / Constraint.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.cckinematics / FoldTree.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccpose / Pose.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccconformation / Residue.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccselect / residue_selector / ResidueSelector.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccpose / selection.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.ccselect / util.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.hhpose / Pose.fwd.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.hhselect / residue_selector / ResidueSelector.fwd.hh
protein_interface_design / movers / AddSidechainConstraintsToHotspots.hhtypes.hh
metal_interface / AddZincSiteConstraints.ccscoring / constraints / AngleConstraint.hh
metal_interface / AddZincSiteConstraints.ccid / AtomID.hh
metal_interface / AddZincSiteConstraints.ccscoring / constraints / AtomPairConstraint.hh
metal_interface / AddZincSiteConstraints.ccscoring / func / CircularHarmonicFunc.hh
metal_interface / AddZincSiteConstraints.ccscoring / constraints / ConstraintSet.hh
metal_interface / AddZincSiteConstraints.ccscoring / constraints / DihedralConstraint.hh
metal_interface / AddZincSiteConstraints.ccscoring / func / Func.hh
metal_interface / AddZincSiteConstraints.ccscoring / func / HarmonicFunc.hh
metal_interface / AddZincSiteConstraints.ccscoring / func / MinMultiHarmonicFunc.hh
metal_interface / AddZincSiteConstraints.ccpose / PDBInfo.hh
metal_interface / AddZincSiteConstraints.ccpose / Pose.hh
metal_interface / AddZincSiteConstraints.ccconformation / Residue.hh
metal_interface / AddZincSiteConstraints.ccchemical / ResidueConnection.hh
metal_interface / AddZincSiteConstraints.hhscoring / constraints / AngleConstraint.hh
metal_interface / AddZincSiteConstraints.hhscoring / constraints / AtomPairConstraint.hh
metal_interface / AddZincSiteConstraints.hhscoring / constraints / DihedralConstraint.hh
metal_interface / AddZincSiteConstraints.hhpose / Pose.fwd.hh
metal_interface / AddZincSiteConstraints.hhtypes.hh
cluster / calibur / AdjacentList.hhtypes.hh
simple_ddg / AlaScan.ccchemical / AA.hh
simple_ddg / AlaScan.ccchemical / AtomType.hh
simple_ddg / AlaScan.ccchemical / ChemicalManager.fwd.hh
simple_ddg / AlaScan.ccconformation / Conformation.hh
simple_ddg / AlaScan.ccscoring / Energies.hh
simple_ddg / AlaScan.cckinematics / FoldTree.hh
simple_ddg / AlaScan.ccpack / pack_rotamers.hh
simple_ddg / AlaScan.ccpack / task / PackerTask.hh
simple_ddg / AlaScan.ccpose / PDBInfo.hh
simple_ddg / AlaScan.ccpose / Pose.hh
simple_ddg / AlaScan.ccscoring / ScoreFunction.hh
simple_ddg / AlaScan.ccscoring / ScoreFunctionFactory.hh
simple_ddg / AlaScan.ccscoring / ScoreType.hh
simple_ddg / AlaScan.ccscoring / ScoreTypeManager.hh
simple_ddg / AlaScan.ccutil / SwitchResidueTypeSet.hh
simple_ddg / AlaScan.ccconformation / symmetry / SymmetricConformation.hh
simple_ddg / AlaScan.ccconformation / symmetry / SymmetryInfo.hh
simple_ddg / AlaScan.ccpack / task / TaskFactory.hh
simple_ddg / AlaScan.cctypes.hh
simple_ddg / AlaScan.ccpose / symmetry / util.hh
simple_ddg / AlaScan.hhpose / Pose.fwd.hh
simple_ddg / AlaScan.hhscoring / ScoreFunction.hh
simple_ddg / AlaScan.hhscoring / ScoreType.hh
simple_ddg / AlaScan.hhtypes.hh
comparative_modeling / Align_RmsdEvaluator.ccpose / Pose.hh
comparative_modeling / Align_RmsdEvaluator.ccscoring / rms_util.hh
comparative_modeling / Align_RmsdEvaluator.ccsequence / Sequence.hh
comparative_modeling / Align_RmsdEvaluator.ccsequence / SequenceAlignment.hh
comparative_modeling / Align_RmsdEvaluator.ccid / SequenceMapping.hh
comparative_modeling / Align_RmsdEvaluator.ccio / silent / SilentStruct.hh
comparative_modeling / Align_RmsdEvaluator.hhpose / Pose.fwd.hh
comparative_modeling / Align_RmsdEvaluator.hhsequence / SequenceAlignment.fwd.hh
comparative_modeling / Align_RmsdEvaluator.hhio / silent / silent.fwd.hh
comparative_modeling / Align_RmsdEvaluator.hhtypes.hh
comparative_modeling / Align_RotamerEvaluator.ccpack / dunbrack / DunbrackRotamer.fwd.hh
comparative_modeling / Align_RotamerEvaluator.ccpose / Pose.hh
comparative_modeling / Align_RotamerEvaluator.ccchemical / ResidueType.hh
comparative_modeling / Align_RotamerEvaluator.ccpack / dunbrack / RotamerLibrary.hh
comparative_modeling / Align_RotamerEvaluator.ccsequence / Sequence.hh
comparative_modeling / Align_RotamerEvaluator.ccsequence / SequenceAlignment.hh
comparative_modeling / Align_RotamerEvaluator.ccid / SequenceMapping.hh
comparative_modeling / Align_RotamerEvaluator.ccio / silent / SilentStruct.hh
comparative_modeling / Align_RotamerEvaluator.hhpose / Pose.fwd.hh
comparative_modeling / Align_RotamerEvaluator.hhsequence / SequenceAlignment.fwd.hh
comparative_modeling / Align_RotamerEvaluator.hhio / silent / silent.fwd.hh
comparative_modeling / Align_RotamerEvaluator.hhtypes.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccconformation / Conformation.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccimport_pose / import_pose.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccpose / PDBInfo.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccpose / Pose.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccpose / ref_pose.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccselect / residue_selector / ResiduePDBInfoHasLabelSelector.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccselect / residue_selector / ResidueRanges.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccselect / residue_selector / ResidueSelector.fwd.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccpose / selection.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccselect / residue_selector / TrueResidueSelector.hh
fold_from_loops / movers / AlignByResidueSelectorMover.cctypes.hh
fold_from_loops / movers / AlignByResidueSelectorMover.cckinematics / util.hh
fold_from_loops / movers / AlignByResidueSelectorMover.ccselect / residue_selector / util.hh
fold_from_loops / movers / AlignByResidueSelectorMover.hhpose / Pose.fwd.hh
fold_from_loops / movers / AlignByResidueSelectorMover.hhselect / residue_selector / ResidueSelector.hh
simple_moves / AlignChainMover.ccconformation / Conformation.hh
simple_moves / AlignChainMover.ccimport_pose / import_pose.hh
simple_moves / AlignChainMover.ccpose / Pose.hh
simple_moves / AlignChainMover.hhpose / Pose.fwd.hh
task_operations / AlignedThreadOperation.ccpose / Pose.hh
task_operations / AlignedThreadOperation.ccpack / task / operation / task_op_schemas.hh
task_operations / AlignedThreadOperation.ccpack / task / operation / TaskOperations.hh
task_operations / AlignedThreadOperation.cctypes.hh
task_operations / AlignedThreadOperation.hhpack / task / PackerTask.fwd.hh
task_operations / AlignedThreadOperation.hhpose / Pose.fwd.hh
task_operations / AlignedThreadOperation.hhtypes.hh
task_operations / AlignedThreadOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
splice / AlignEndsMover.ccconformation / Conformation.hh
splice / AlignEndsMover.ccscoring / dssp / Dssp.hh
splice / AlignEndsMover.ccimport_pose / import_pose.hh
splice / AlignEndsMover.ccpose / Pose.hh
splice / AlignEndsMover.hhkinematics / Jump.hh
splice / AlignEndsMover.hhpose / Pose.fwd.hh
evaluation / AlignEvaluator.ccpose / Pose.hh
evaluation / AlignEvaluator.ccchemical / ResidueType.hh
evaluation / AlignEvaluator.ccsequence / Sequence.hh
evaluation / AlignEvaluator.ccsequence / SequenceAlignment.hh
evaluation / AlignEvaluator.ccid / SequenceMapping.hh
evaluation / AlignEvaluator.ccio / silent / SilentStruct.hh
evaluation / AlignEvaluator.ccid / types.hh
evaluation / AlignEvaluator.ccsequence / util.hh
evaluation / AlignEvaluator.hhpose / Pose.fwd.hh
evaluation / AlignEvaluator.hhsequence / SequenceAlignment.fwd.hh
evaluation / AlignEvaluator.hhio / silent / SilentStruct.fwd.hh
evaluation / AlignEvaluator.hhtypes.hh
evolution / AlignmentAAFinderFilter.ccconformation / Atom.hh
evolution / AlignmentAAFinderFilter.ccscoring / dssp / Dssp.hh
evolution / AlignmentAAFinderFilter.ccscoring / Energies.hh
evolution / AlignmentAAFinderFilter.ccscoring / EnergyGraph.hh
evolution / AlignmentAAFinderFilter.ccscoring / EnergyMap.hh
evolution / AlignmentAAFinderFilter.ccpack / task / PackerTask.hh
evolution / AlignmentAAFinderFilter.ccpose / Pose.hh
evolution / AlignmentAAFinderFilter.ccconformation / Residue.hh
evolution / AlignmentAAFinderFilter.ccscoring / ScoreFunction.hh
evolution / AlignmentAAFinderFilter.ccsequence / SequenceAlignment.hh
evolution / AlignmentAAFinderFilter.ccpack / task / TaskFactory.hh
evolution / AlignmentAAFinderFilter.ccpose / symmetry / util.hh
evolution / AlignmentAAFinderFilter.ccsequence / util.hh
evolution / AlignmentAAFinderFilter.ccpose / util.hh
evolution / AlignmentAAFinderFilter.hhpose / Pose.fwd.hh
evolution / AlignmentAAFinderFilter.hhscoring / ScoreFunction.fwd.hh
evolution / AlignmentCleanerTools.ccpack / task / PackerTask.hh
evolution / AlignmentCleanerTools.ccpose / Pose.hh
evolution / AlignmentCleanerTools.ccscoring / ScoreFunction.hh
evolution / AlignmentCleanerTools.ccpack / task / TaskFactory.hh
evolution / AlignmentCleanerTools.ccpose / symmetry / util.hh
evolution / AlignmentCleanerTools.ccpose / util.hh
evolution / AlignmentCleanerTools.hhpose / Pose.hh
evolution / AlignmentCleanerTools.hhscoring / ScoreFunction.hh
evolution / AlignmentCleanerTools.hhpose / util.hh
comparative_modeling / AlignmentClustering.ccpose / annotated_sequence.hh
comparative_modeling / AlignmentClustering.cckinematics / FoldTree.hh
comparative_modeling / AlignmentClustering.ccimport_pose / import_pose.hh
comparative_modeling / AlignmentClustering.ccpose / Pose.hh
comparative_modeling / AlignmentClustering.ccchemical / ResidueTypeSet.fwd.hh
comparative_modeling / AlignmentClustering.ccscoring / rms_util.hh
comparative_modeling / AlignmentClustering.ccsequence / SequenceAlignment.hh
comparative_modeling / AlignmentClustering.cctypes.hh
comparative_modeling / AlignmentClustering.ccsequence / util.hh
comparative_modeling / AlignmentClustering.ccchemical / util.hh
comparative_modeling / AlignmentClustering.hhkinematics / Jump.hh
comparative_modeling / AlignmentClustering.hhpose / Pose.fwd.hh
comparative_modeling / AlignmentClustering.hhconformation / Residue.hh
comparative_modeling / AlignmentClustering.hhsequence / SequenceAlignment.fwd.hh
comparative_modeling / AlignmentClustering.hhtypes.hh
rna / AlignmentEnergy.ccid / AtomID.hh
rna / AlignmentEnergy.ccchemical / ChemicalManager.hh
rna / AlignmentEnergy.ccscoring / constraints / CoordinateConstraint.hh
rna / AlignmentEnergy.ccscoring / EnergyMap.hh
rna / AlignmentEnergy.ccscoring / func / FlatHarmonicFunc.hh
rna / AlignmentEnergy.ccpose / full_model_info / FullModelInfo.hh
rna / AlignmentEnergy.ccscoring / func / HarmonicFunc.hh
rna / AlignmentEnergy.ccimport_pose / import_pose.hh
rna / AlignmentEnergy.ccscoring / constraints / MultiConstraint.hh
rna / AlignmentEnergy.ccpose / Pose.hh
rna / AlignmentEnergy.ccconformation / Residue.hh
rna / AlignmentEnergy.ccscoring / rms_util.hh
rna / AlignmentEnergy.ccscoring / ScoreFunction.hh
rna / AlignmentEnergy.ccscoring / ScoreType.hh
rna / AlignmentEnergy.cctypes.hh
rna / AlignmentEnergy.ccpose / full_model_info / util.hh
rna / AlignmentEnergy.ccscoring / methods / WholeStructureEnergy.hh
rna / AlignmentEnergy.ccscoring / func / XYZ_Func.hh
rna / AlignmentEnergy.hhscoring / methods / EnergyMethod.hh
rna / AlignmentEnergy.hhscoring / methods / EnergyMethodOptions.fwd.hh
rna / AlignmentEnergy.hhscoring / func / Func.fwd.hh
rna / AlignmentEnergy.hhpose / Pose.fwd.hh
rna / AlignmentEnergy.hhscoring / ScoreFunction.fwd.hh
rna / AlignmentEnergy.hhscoring / ScoreType.hh
rna / AlignmentEnergy.hhtypes.hh
rna / AlignmentEnergy.hhscoring / methods / WholeStructureEnergy.hh
rna / AlignmentEnergyCreator.hhscoring / methods / EnergyMethod.fwd.hh
rna / AlignmentEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
rna / AlignmentEnergyCreator.hhscoring / methods / EnergyMethodOptions.fwd.hh
sewing / hashing / AlignmentFileGeneratorMover.ccid / AtomID.hh
sewing / hashing / AlignmentFileGeneratorMover.ccchemical / AtomType.hh
sewing / hashing / AlignmentFileGeneratorMover.ccchemical / AtomTypeSet.hh
sewing / hashing / AlignmentFileGeneratorMover.ccselect / residue_selector / BondedResidueSelector.hh
sewing / hashing / AlignmentFileGeneratorMover.ccchemical / ChemicalManager.hh
sewing / hashing / AlignmentFileGeneratorMover.ccconformation / Conformation.hh
sewing / hashing / AlignmentFileGeneratorMover.ccscoring / dssp / Dssp.hh
sewing / hashing / AlignmentFileGeneratorMover.ccimport_pose / import_pose.hh
sewing / hashing / AlignmentFileGeneratorMover.ccutil / metalloproteins_util.hh
sewing / hashing / AlignmentFileGeneratorMover.ccpose / PDBInfo.hh
sewing / hashing / AlignmentFileGeneratorMover.ccpose / Pose.hh
sewing / hashing / AlignmentFileGeneratorMover.ccconformation / Residue.hh
sewing / hashing / AlignmentFileGeneratorMover.ccselect / residue_selector / ResidueSelector.hh
sewing / hashing / AlignmentFileGeneratorMover.ccpose / selection.hh
sewing / hashing / AlignmentFileGeneratorMover.ccpose / subpose_manipulation_util.hh
sewing / hashing / AlignmentFileGeneratorMover.ccselect / residue_selector / util.hh
sewing / hashing / AlignmentFileGeneratorMover.hhpose / Pose.fwd.hh
sewing / hashing / AlignmentFileGeneratorMover.hhconformation / Residue.fwd.hh
sewing / hashing / AlignmentFileGeneratorMover.hhselect / residue_selector / ResidueSelector.fwd.hh
evolution / AlignmentGapInserterFilter.ccconformation / Atom.hh
evolution / AlignmentGapInserterFilter.ccscoring / dssp / Dssp.hh
evolution / AlignmentGapInserterFilter.ccscoring / Energies.hh
evolution / AlignmentGapInserterFilter.ccscoring / EnergyGraph.hh
evolution / AlignmentGapInserterFilter.ccscoring / EnergyMap.hh
evolution / AlignmentGapInserterFilter.ccpack / task / PackerTask.hh
evolution / AlignmentGapInserterFilter.ccpose / Pose.hh
evolution / AlignmentGapInserterFilter.ccconformation / Residue.hh
evolution / AlignmentGapInserterFilter.ccscoring / ScoreFunction.hh
evolution / AlignmentGapInserterFilter.ccsequence / SequenceAlignment.hh
evolution / AlignmentGapInserterFilter.ccpack / task / TaskFactory.hh
evolution / AlignmentGapInserterFilter.ccpose / symmetry / util.hh
evolution / AlignmentGapInserterFilter.ccsequence / util.hh
evolution / AlignmentGapInserterFilter.ccpose / util.hh
evolution / AlignmentGapInserterFilter.hhpose / Pose.fwd.hh
evolution / AlignmentGapInserterFilter.hhscoring / ScoreFunction.fwd.hh
comparative_modeling / AlignmentSet.ccsequence / Sequence.hh
comparative_modeling / AlignmentSet.ccsequence / SequenceAlignment.hh
comparative_modeling / AlignmentSet.hhsequence / Sequence.hh
comparative_modeling / AlignmentSet.hhsequence / SequenceAlignment.hh
pdbinfo_manipulations / AlignPDBInfoToSequences.ccpose / PDBInfo.hh
pdbinfo_manipulations / AlignPDBInfoToSequences.ccpose / Pose.hh
pdbinfo_manipulations / AlignPDBInfoToSequences.ccsequence / Sequence.hh
pdbinfo_manipulations / AlignPDBInfoToSequences.ccsequence / SequenceAlignment.hh
pdbinfo_manipulations / AlignPDBInfoToSequences.ccid / SequenceMapping.hh
pdbinfo_manipulations / AlignPDBInfoToSequences.ccsequence / SimpleScoringScheme.hh
pdbinfo_manipulations / AlignPDBInfoToSequences.ccsequence / SWAligner.hh
pdbinfo_manipulations / AlignPDBInfoToSequences.hhpose / Pose.fwd.hh
pdbinfo_manipulations / AlignPDBInfoToSequencesUtil.ccsequence / Sequence.hh
pdbinfo_manipulations / AlignPDBInfoToSequencesUtil.hhsequence / Sequence.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccid / AtomID.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccid / AtomID_Map.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.cckinematics / FoldTree.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccpose / Pose.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccconformation / Residue.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccchemical / ResidueTypeSet.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccscoring / rms_util.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccutil / SwitchResidueTypeSet.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.cctypes.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.ccpose / util.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.hhchemical / ChemicalManager.fwd.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.hhconformation / Residue.fwd.hh
toolbox / match_enzdes_util / AlignPoseToInvrotTreeMover.hhtypes.hh
denovo_design / movers / AlignResiduesMover.ccid / AtomID.hh
denovo_design / movers / AlignResiduesMover.ccconformation / Conformation.hh
denovo_design / movers / AlignResiduesMover.cckinematics / FoldTree.hh
denovo_design / movers / AlignResiduesMover.ccpose / Pose.hh
denovo_design / movers / AlignResiduesMover.ccconformation / Residue.hh
denovo_design / movers / AlignResiduesMover.ccselect / residue_selector / ResidueIndexSelector.hh
denovo_design / movers / AlignResiduesMover.ccselect / residue_selector / ResidueVector.hh
denovo_design / movers / AlignResiduesMover.cckinematics / RT.hh
denovo_design / movers / AlignResiduesMover.ccpose / variant_util.hh
denovo_design / movers / AlignResiduesMover.hhpose / Pose.fwd.hh
denovo_design / movers / AlignResiduesMover.hhselect / residue_selector / ResidueSelector.fwd.hh
denovo_design / movers / AlignResiduesMover.hhselect / residue_selector / ResidueVector.fwd.hh
stepwise / screener / AlignRMSD_Screener.ccpose / Pose.hh
stepwise / screener / AlignRMSD_Screener.hhpose / Pose.fwd.hh
stepwise / screener / AlignRMSD_Screener.hhtypes.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccimport_pose / import_pose.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccpose / Pose.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccsequence / SequenceAlignment.fwd.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccsequence / SequenceAlignment.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccio / silent / silent.fwd.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccio / silent / SilentStruct.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.ccsequence / util.hh
comparative_modeling / AlignRmsdTargetEvaluatorCreator.hhtypes.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.ccpose / Pose.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.ccconformation / Residue.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.cctypes.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.hhpose / Pose.fwd.hh
toolbox / match_enzdes_util / AllowedSeqposForGeomCst.hhtypes.hh
hybridization / AllResiduesChanged.hhfragment / FragSet.fwd.hh
abinitio / AllResiduesChanged.hhfragment / FragSet.fwd.hh
abinitio / AllResiduesChanged.hhkinematics / MoveMap.hh
hybridization / AllResiduesChanged.hhpose / Pose.hh
abinitio / AllResiduesChanged.hhpose / Pose.hh
hybridization / AllResiduesChanged.hhconformation / Residue.hh
abinitio / AllResiduesChanged.hhconformation / Residue.hh
pmut_scan / AlterSpecDisruptionDriver.ccconformation / Conformation.hh
pmut_scan / AlterSpecDisruptionDriver.ccpose / Pose.hh
pmut_scan / AlterSpecDisruptionDriver.hhpose / Pose.fwd.hh
pmut_scan / AlterSpecDisruptionDriver.hhtypes.hh
frag_picker / scores / AmbigCSScore.hhtypes.hh
constraints_additional / AmbiguousMultiConstraint.ccscoring / constraints / Constraint.hh
constraints_additional / AmbiguousMultiConstraint.hhscoring / constraints / AmbiguousConstraint.hh
constraints_additional / AmbiguousMultiConstraint.hhid / AtomID.hh
constraints_additional / AmbiguousMultiConstraint.hhconformation / Conformation.fwd.hh
constraints_additional / AmbiguousMultiConstraint.hhscoring / EnergyMap.fwd.hh
constraints_additional / AmbiguousMultiConstraint.hhpose / Pose.fwd.hh
constraints_additional / AmbiguousMultiConstraint.hhscoring / ScoreType.hh
constraints_additional / AmbiguousMultiConstraint.hhid / SequenceMapping.fwd.hh
constraints_additional / AmbiguousMultiConstraint.hhscoring / func / XYZ_Func.fwd.hh
pose_length_moves / AnalyzeLoopModeling.ccscoring / dssp / Dssp.hh
pose_length_moves / AnalyzeLoopModeling.ccpose / Pose.hh
pose_length_moves / AnalyzeLoopModeling.ccconformation / symmetry / SymmetricConformation.hh
pose_length_moves / AnalyzeLoopModeling.ccconformation / symmetry / SymmetryInfo.fwd.hh
pose_length_moves / AnalyzeLoopModeling.ccconformation / symmetry / SymmetryInfo.hh
pose_length_moves / AnalyzeLoopModeling.ccpose / util.hh
pose_length_moves / AnalyzeLoopModeling.ccpose / symmetry / util.hh
pose_length_moves / AnalyzeLoopModeling.hhpose / Pose.fwd.hh
pose_length_moves / AnalyzeLoopModeling.hhtypes.hh
anchored_design / Anchor.ccpose / PDBInfo.hh
anchored_design / Anchor.ccpose / PDBPoseMap.hh
anchored_design / Anchor.ccpose / Pose.hh
anchored_design / Anchor.cctypes.hh
anchored_design / Anchor.hhpose / Pose.fwd.hh
anchored_design / Anchor.hhtypes.hh
grafting / AnchoredGraftMover.ccchemical / ChemicalManager.hh
grafting / AnchoredGraftMover.ccscoring / constraints / ConstraintSet.hh
grafting / AnchoredGraftMover.cckinematics / FoldTree.hh
grafting / AnchoredGraftMover.cckinematics / MoveMap.hh
grafting / AnchoredGraftMover.ccselect / movemap / MoveMapFactory.hh
grafting / AnchoredGraftMover.ccpack / task / PackerTask.hh
grafting / AnchoredGraftMover.ccpose / Pose.hh
grafting / AnchoredGraftMover.ccchemical / ResidueType.hh
grafting / AnchoredGraftMover.ccchemical / ResidueTypeSet.hh
grafting / AnchoredGraftMover.ccscoring / rms_util.hh
grafting / AnchoredGraftMover.ccscoring / ScoreFunction.hh
grafting / AnchoredGraftMover.ccscoring / ScoreFunctionFactory.hh
grafting / AnchoredGraftMover.ccpose / selection.hh
grafting / AnchoredGraftMover.ccpack / task / TaskFactory.hh
grafting / AnchoredGraftMover.ccpose / variant_util.hh
grafting / AnchoredGraftMover.ccchemical / VariantType.hh
grafting / AnchoredGraftMover.hhkinematics / MoveMap.fwd.hh
grafting / AnchoredGraftMover.hhselect / movemap / MoveMapFactory.fwd.hh
grafting / AnchoredGraftMover.hhpose / Pose.fwd.hh
grafting / AnchoredGraftMover.hhscoring / ScoreFunction.fwd.hh
anchored_design / AnchorMovers.ccchemical / ChemicalManager.fwd.hh
anchored_design / AnchorMovers.ccconformation / Conformation.hh
anchored_design / AnchorMovers.ccscoring / constraints / ConstraintSet.hh
anchored_design / AnchorMovers.cckinematics / FoldTree.hh
anchored_design / AnchorMovers.ccfragment / FragSet.hh
anchored_design / AnchorMovers.ccimport_pose / import_pose.hh
anchored_design / AnchorMovers.cckinematics / MoveMap.hh
anchored_design / AnchorMovers.ccpack / task / PackerTask.hh
anchored_design / AnchorMovers.ccpose / Pose.hh
anchored_design / AnchorMovers.ccconformation / Residue.hh
anchored_design / AnchorMovers.ccconformation / ResidueFactory.hh
anchored_design / AnchorMovers.ccscoring / rms_util.hh
anchored_design / AnchorMovers.ccscoring / rms_util.tmpl.hh
anchored_design / AnchorMovers.ccscoring / ScoreFunction.hh
anchored_design / AnchorMovers.ccpack / task / TaskFactory.hh
anchored_design / AnchorMovers.ccpack / task / operation / TaskOperations.hh
anchored_design / AnchorMovers.cctypes.hh
anchored_design / AnchorMovers.ccscoring / constraints / util.hh
anchored_design / AnchorMovers.ccpose / variant_util.hh
anchored_design / AnchorMovers.ccchemical / VariantType.hh
anchored_design / AnchorMovers.hhpose / Pose.fwd.hh
anchored_design / AnchorMoversData.ccid / AtomID.hh
anchored_design / AnchorMoversData.ccscoring / constraints / AtomPairConstraint.hh
anchored_design / AnchorMoversData.ccpose / metrics / CalculatorFactory.hh
anchored_design / AnchorMoversData.ccconformation / Conformation.hh
anchored_design / AnchorMoversData.ccfragment / ConstantLengthFragSet.hh
anchored_design / AnchorMoversData.ccscoring / constraints / ConstraintSet.hh
anchored_design / AnchorMoversData.ccfragment / picking_old / FragmentLibraryManager.hh
anchored_design / AnchorMoversData.ccfragment / FragSet.hh
anchored_design / AnchorMoversData.ccfragment / Frame.hh
anchored_design / AnchorMoversData.ccscoring / func / HarmonicFunc.hh
anchored_design / AnchorMoversData.ccpose / metrics / simple_calculators / InterfaceNeighborDefinitionCalculator.hh
anchored_design / AnchorMoversData.cckinematics / MoveMap.hh
anchored_design / AnchorMoversData.ccpack / task / PackerTask.hh
anchored_design / AnchorMoversData.ccpose / Pose.hh
anchored_design / AnchorMoversData.ccchemical / ResidueType.hh
anchored_design / AnchorMoversData.ccscoring / ScoreFunction.hh
anchored_design / AnchorMoversData.ccscoring / ScoreFunctionFactory.hh
anchored_design / AnchorMoversData.ccpack / task / TaskFactory.hh
anchored_design / AnchorMoversData.ccpack / task / operation / TaskOperations.hh
anchored_design / AnchorMoversData.ccid / TorsionID.hh
anchored_design / AnchorMoversData.cctypes.hh
anchored_design / AnchorMoversData.ccid / types.hh
anchored_design / AnchorMoversData.ccfragment / picking_old / vall / util.hh
anchored_design / AnchorMoversData.ccscoring / constraints / util.hh
anchored_design / AnchorMoversData.hhfragment / FragSet.fwd.hh
anchored_design / AnchorMoversData.hhkinematics / MoveMap.fwd.hh
anchored_design / AnchorMoversData.hhpack / task / PackerTask.hh
anchored_design / AnchorMoversData.hhpose / Pose.fwd.hh
anchored_design / AnchorMoversData.hhscoring / ScoreFunction.fwd.hh
anchored_design / AnchorMoversData.hhpack / task / TaskFactory.fwd.hh
anchored_design / AnchorMoversData.hhtypes.hh
stepwise / screener / AnchorSugarScreener.ccpose / extra_pose_info_util.hh
stepwise / screener / AnchorSugarScreener.ccpose / Pose.hh
stepwise / screener / AnchorSugarScreener.hhpose / Pose.fwd.hh
stepwise / screener / AnchorSugarScreener.hhtypes.hh
simple_filters / AngleToVectorFilter.ccconformation / Conformation.hh
simple_filters / AngleToVectorFilter.ccpose / Pose.hh
simple_filters / AngleToVectorFilter.ccconformation / Residue.hh
simple_filters / AngleToVectorFilter.hhpose / Pose.hh
simple_filters / AngleToVectorFilter.hhtypes.hh
sparta / ANN.cctypes.hh
antibody / AntibodyCDRGrafter.ccimport_pose / import_pose.hh
antibody / AntibodyCDRGrafter.ccpose / Pose.hh
antibody / AntibodyCDRGrafter.ccscoring / ScoreFunction.hh
antibody / AntibodyCDRGrafter.ccscoring / ScoreFunctionFactory.hh
antibody / AntibodyCDRGrafter.hhpose / Pose.hh
antibody / AntibodyCDRGrafter.hhscoring / ScoreFunction.fwd.hh
antibody_legacy / AntibodyClass.ccchemical / AtomType.hh
antibody_legacy / AntibodyClass.cckinematics / FoldTree.hh
antibody_legacy / AntibodyClass.ccpose / PDBInfo.hh
antibody_legacy / AntibodyClass.ccpose / Pose.hh
antibody_legacy / AntibodyClass.ccscoring / rms_util.hh
antibody_legacy / AntibodyClass.cctypes.hh
antibody_legacy / AntibodyClass.ccpose / util.hh
antibody_legacy / AntibodyClass.ccpose / util.tmpl.hh
antibody_legacy / AntibodyClass.hhkinematics / MoveMap.hh
antibody_legacy / AntibodyClass.hhpose / Pose.hh
antibody_legacy / AntibodyClass.hhtypes.hh
antibody / database / AntibodyDatabaseManager.ccchemical / AA.hh
antibody / database / AntibodyDatabaseManager.ccpose / datacache / CacheableDataType.hh
antibody / database / AntibodyDatabaseManager.ccconformation / Conformation.hh
antibody / database / AntibodyDatabaseManager.ccpose / Pose.hh
antibody / database / AntibodyDatabaseManager.hhpose / Pose.hh
antibody / design / AntibodyDesignMover.ccpose / datacache / CacheableDataType.hh
antibody / design / AntibodyDesignMover.ccconformation / Conformation.hh
antibody / design / AntibodyDesignMover.ccpose / extra_pose_info_util.hh
antibody / design / AntibodyDesignMover.ccoptimization / MinimizerOptions.hh
antibody / design / AntibodyDesignMover.ccpose / PDBInfo.hh
antibody / design / AntibodyDesignMover.ccscoring / ScoreFunction.hh
antibody / design / AntibodyDesignMover.ccscoring / ScoreFunctionFactory.hh
antibody / design / AntibodyDesignMover.ccpose / util.hh
antibody / design / AntibodyDesignMover.ccscoring / constraints / util.hh
antibody / design / AntibodyDesignMover.hhscoring / constraints / Constraint.hh
antibody / design / AntibodyDesignMover.hhpose / Pose.fwd.hh
antibody / design / AntibodyDesignMover.hhscoring / ScoreFunction.hh
antibody / design / AntibodyDesignMover.hhtypes.hh
antibody / AntibodyEnum.hhtypes.hh
antibody / AntibodyFeatures.ccid / AtomID.hh
antibody / AntibodyFeatures.ccconformation / find_neighbors.hh
antibody / AntibodyFeatures.ccconformation / PointGraph.hh
antibody / AntibodyFeatures.ccconformation / PointGraphData.hh
antibody / AntibodyFeatures.ccscoring / ScoreFunctionFactory.hh
antibody / AntibodyFeatures.ccpose / util.hh
antibody / AntibodyFeaturesCreator.hhtypes.hh
antibody / AntibodyInfo.ccpose / datacache / CacheableDataType.hh
antibody / AntibodyInfo.ccpose / chains_util.hh
antibody / AntibodyInfo.ccscoring / constraints / ConstraintIO.hh
antibody / AntibodyInfo.ccscoring / constraints / DihedralConstraint.hh
antibody / AntibodyInfo.ccpose / PDBInfo.hh
antibody / AntibodyInfo.ccscoring / rms_util.hh
antibody / AntibodyInfo.ccscoring / ScoreFunctionFactory.hh
antibody / AntibodyInfo.ccscoring / ScoreType.hh
antibody / AntibodyInfo.ccpose / util.hh
antibody / AntibodyInfo.ccpose / util.tmpl.hh
antibody / AntibodyInfo.hhkinematics / FoldTree.hh
antibody / AntibodyInfo.hhkinematics / MoveMap.hh
antibody / AntibodyInfo.hhscoring / ScoreFunction.hh
antibody / AntibodyInfo.hhpack / task / TaskFactory.hh
antibody_legacy / AntibodyModeler.ccpose / datacache / CacheableDataType.hh
antibody_legacy / AntibodyModeler.ccpose / extra_pose_info_util.hh
antibody_legacy / AntibodyModeler.cckinematics / FoldTree.hh
antibody_legacy / AntibodyModeler.ccfragment / FragData.hh
antibody_legacy / AntibodyModeler.ccfragment / FragSet.hh
antibody_legacy / AntibodyModeler.ccfragment / Frame.hh
antibody_legacy / AntibodyModeler.ccfragment / FrameList.hh
antibody_legacy / AntibodyModeler.ccimport_pose / import_pose.hh
antibody_legacy / AntibodyModeler.cckinematics / MoveMap.hh
antibody_legacy / AntibodyModeler.ccpack / task / operation / NoRepackDisulfides.hh
antibody_legacy / AntibodyModeler.ccpack / task / operation / OperateOnCertainResidues.hh
antibody_legacy / AntibodyModeler.ccpack / task / PackerTask.hh
antibody_legacy / AntibodyModeler.ccpose / PDBInfo.hh
antibody_legacy / AntibodyModeler.ccpose / Pose.hh
antibody_legacy / AntibodyModeler.ccpack / task / operation / ResFilters.hh
antibody_legacy / AntibodyModeler.ccpack / task / operation / ResLvlTaskOperations.hh
antibody_legacy / AntibodyModeler.ccscoring / rms_util.tmpl.hh
antibody_legacy / AntibodyModeler.ccpack / dunbrack / RotamerConstraint.hh
antibody_legacy / AntibodyModeler.ccscoring / ScoreFunction.hh
antibody_legacy / AntibodyModeler.ccscoring / ScoreFunctionFactory.hh
antibody_legacy / AntibodyModeler.ccio / raw_data / ScoreMap.hh
antibody_legacy / AntibodyModeler.ccscoring / ScoreType.hh
antibody_legacy / AntibodyModeler.ccpack / task / TaskFactory.hh
antibody_legacy / AntibodyModeler.ccpack / task / operation / TaskOperations.hh
antibody_legacy / AntibodyModeler.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody_legacy / AntibodyModeler.ccpose / variant_util.hh
antibody_legacy / AntibodyModeler.ccchemical / VariantType.hh
antibody_legacy / AntibodyModeler.hhkinematics / FoldTree.fwd.hh
antibody_legacy / AntibodyModeler.hhfragment / FragData.fwd.hh
antibody_legacy / AntibodyModeler.hhfragment / FragSet.fwd.hh
antibody_legacy / AntibodyModeler.hhkinematics / MoveMap.fwd.hh
antibody_legacy / AntibodyModeler.hhpose / Pose.hh
antibody_legacy / AntibodyModeler.hhscoring / ScoreFunction.fwd.hh
antibody_legacy / AntibodyModeler.hhpack / task / TaskFactory.fwd.hh
antibody_legacy / AntibodyModeler.hhtypes.hh
antibody / AntibodyModelerProtocol.ccscoring / constraints / AngleConstraint.hh
antibody / AntibodyModelerProtocol.ccpose / datacache / CacheableDataType.hh
antibody / AntibodyModelerProtocol.ccchemical / ChemicalManager.hh
antibody / AntibodyModelerProtocol.ccscoring / constraints / ConstraintFactory.hh
antibody / AntibodyModelerProtocol.ccscoring / constraints / ConstraintIO.hh
antibody / AntibodyModelerProtocol.ccscoring / constraints / DihedralConstraint.hh
antibody / AntibodyModelerProtocol.ccscoring / Energies.hh
antibody / AntibodyModelerProtocol.ccpose / extra_pose_info_util.hh
antibody / AntibodyModelerProtocol.ccscoring / func / FlatHarmonicFunc.hh
antibody / AntibodyModelerProtocol.ccimport_pose / import_pose.hh
antibody / AntibodyModelerProtocol.ccpack / task / PackerTask.hh
antibody / AntibodyModelerProtocol.ccpose / PDBInfo.hh
antibody / AntibodyModelerProtocol.ccpack / dunbrack / RotamerConstraint.hh
antibody / AntibodyModelerProtocol.ccscoring / ScoreFunction.hh
antibody / AntibodyModelerProtocol.ccscoring / ScoreFunctionFactory.hh
antibody / AntibodyModelerProtocol.ccio / raw_data / ScoreMap.hh
antibody / AntibodyModelerProtocol.ccscoring / ScoreType.hh
antibody / AntibodyModelerProtocol.ccio / silent / SilentStruct.hh
antibody / AntibodyModelerProtocol.ccio / silent / SilentStructFactory.hh
antibody / AntibodyModelerProtocol.ccpack / task / TaskFactory.hh
antibody / AntibodyModelerProtocol.ccpack / task / operation / TaskOperations.hh
antibody / AntibodyModelerProtocol.ccpack / rotamer_set / UnboundRotamersOperation.hh
antibody / AntibodyModelerProtocol.ccpose / util.hh
antibody / AntibodyModelerProtocol.ccchemical / VariantType.hh
antibody / AntibodyModelerProtocol.hhpose / Pose.hh
antibody / AntibodyModelerProtocol.hhscoring / ScoreFunction.fwd.hh
antibody / AntibodyModelerProtocol.hhpack / task / TaskFactory.fwd.hh
antibody / AntibodyModelerProtocol.hhtypes.hh
antibody / AntibodyNumberingConverterMover.ccpose / chains_util.hh
antibody / AntibodyNumberingConverterMover.ccpose / PDBInfo.hh
antibody / AntibodyNumberingConverterMover.ccpose / Pose.hh
antibody / AntibodyNumberingConverterMover.ccpose / util.hh
antibody / AntibodyNumberingConverterMover.hhpose / Pose.fwd.hh
antibody / residue_selector / AntibodyRegionSelector.ccpose / Pose.hh
antibody / residue_selector / AntibodyRegionSelector.ccselect / residue_selector / ResidueSelectorFactory.hh
antibody / residue_selector / AntibodyRegionSelector.ccselect / residue_selector / util.hh
antibody / residue_selector / AntibodyRegionSelector.hhpose / Pose.fwd.hh
antibody / residue_selector / AntibodyRegionSelector.hhselect / residue_selector / ResidueSelector.hh
antibody / residue_selector / AntibodyRegionSelector.hhtypes.hh
antibody / residue_selector / AntibodyRegionSelectorCreator.hhselect / residue_selector / ResidueSelectorCreator.hh
antibody / design / AntibodySeqDesignTFCreator.ccchemical / AA.hh
antibody / design / AntibodySeqDesignTFCreator.ccpack / task / operation / NoRepackDisulfides.hh
antibody / design / AntibodySeqDesignTFCreator.ccpack / task / operation / OperateOnCertainResidues.hh
antibody / design / AntibodySeqDesignTFCreator.ccconformation / Residue.hh
antibody / design / AntibodySeqDesignTFCreator.ccpack / task / operation / ResLvlTaskOperations.hh
antibody / design / AntibodySeqDesignTFCreator.ccpack / task / operation / TaskOperations.hh
antibody / design / AntibodySeqDesignTFCreator.hhpose / Pose.hh
antibody / design / AntibodySeqDesignTFCreator.hhpack / task / TaskFactory.fwd.hh
cluster / APCluster.hhtypes.hh
sewing / movers / AppendAssemblyMover.ccimport_pose / import_pose.hh
sewing / movers / AppendAssemblyMover.ccpose / Pose.hh
sewing / movers / AppendAssemblyMover.ccselect / residue_selector / ResidueSelector.hh
sewing / movers / AppendAssemblyMover.ccpose / selection.hh
sewing / movers / AppendAssemblyMover.ccselect / residue_selector / util.hh
sewing / movers / AppendAssemblyMover.hhpose / Pose.fwd.hh
sewing / movers / AppendAssemblyMover.hhselect / residue_selector / ResidueSelector.fwd.hh
membrane / AqueousPoreFinder.ccchemical / AA.hh
membrane / AqueousPoreFinder.ccconformation / membrane / AqueousPoreParameters.hh
membrane / AqueousPoreFinder.ccconformation / Conformation.hh
membrane / AqueousPoreFinder.ccconformation / membrane / ImplicitLipidInfo.hh
membrane / AqueousPoreFinder.ccconformation / membrane / MembraneInfo.hh
membrane / AqueousPoreFinder.ccpose / PDBInfo.hh
membrane / AqueousPoreFinder.ccpose / Pose.hh
membrane / AqueousPoreFinder.ccconformation / membrane / SpanningTopology.hh
membrane / AqueousPoreFinder.ccpose / util.hh
membrane / AqueousPoreFinder.hhconformation / membrane / AqueousPoreParameters.hh
membrane / AqueousPoreFinder.hhpose / Pose.fwd.hh
membrane / AqueousPoreFinder.hhtypes.hh
jd2 / archive / ArchiveBase.ccchemical / ChemicalManager.hh
jd2 / archive / ArchiveBase.cckinematics / Jump.hh
jd2 / archive / ArchiveBase.ccpose / Pose.hh
jd2 / archive / ArchiveBase.ccconformation / Residue.hh
jd2 / archive / ArchiveBase.ccscoring / ScoreFunction.hh
jd2 / archive / ArchiveBase.ccscoring / ScoreFunctionFactory.hh
jd2 / archive / ArchiveBase.ccio / silent / SilentFileData.hh
jd2 / archive / ArchiveBase.ccio / silent / SilentFileOptions.hh
jd2 / archive / ArchiveBase.hhpose / Pose.fwd.hh
jd2 / archive / ArchiveBase.hhscoring / ScoreFunction.fwd.hh
jd2 / archive / ArchiveBase.hhio / silent / silent.fwd.hh
jd2 / archive / ArchiveBase.hhtypes.hh
jd2 / archive / ArchiveManager.ccio / silent / SilentFileData.hh
jd2 / archive / ArchiveManager.ccio / silent / SilentFileOptions.hh
jd2 / archive / ArchiveManager.hhio / silent / silent.fwd.hh
jd2 / archive / ArchiveManager.hhtypes.hh
constel / AromaticFilter.ccchemical / AA.hh
constel / AromaticFilter.ccpose / PDBInfo.hh
constel / AromaticFilter.ccpose / Pose.hh
constel / AromaticFilter.ccconformation / Residue.hh
constel / AromaticFilter.hhpose / Pose.fwd.hh
constel / AromaticFilter.hhtypes.hh
domain_assembly / AssembleLinkerMover.ccchemical / ChemicalManager.fwd.hh
domain_assembly / AssembleLinkerMover.ccconformation / Conformation.hh
domain_assembly / AssembleLinkerMover.cckinematics / FoldTree.hh
domain_assembly / AssembleLinkerMover.ccfragment / FragSet.fwd.hh
domain_assembly / AssembleLinkerMover.ccfragment / FragSet.hh
domain_assembly / AssembleLinkerMover.ccpose / PDBInfo.hh
domain_assembly / AssembleLinkerMover.ccpose / Pose.hh
domain_assembly / AssembleLinkerMover.ccconformation / Residue.hh
domain_assembly / AssembleLinkerMover.ccutil / SwitchResidueTypeSet.hh
domain_assembly / AssembleLinkerMover.cctypes.hh
domain_assembly / AssembleLinkerMover.hhfragment / FragSet.hh
domain_assembly / AssembleLinkerMover.hhtypes.hh
legacy_sewing / conformation / Assembly.ccchemical / AA.hh
legacy_sewing / conformation / Assembly.ccpack / rotamer_set / AddResiduesRotamerSetOperation.hh
legacy_sewing / conformation / Assembly.ccpose / annotated_sequence.hh
legacy_sewing / conformation / Assembly.ccchemical / ChemicalManager.hh
legacy_sewing / conformation / Assembly.ccscoring / dssp / Dssp.hh
legacy_sewing / conformation / Assembly.cckinematics / Edge.hh
legacy_sewing / conformation / Assembly.ccscoring / Energies.hh
legacy_sewing / conformation / Assembly.cckinematics / FoldTree.hh
legacy_sewing / conformation / Assembly.ccscoring / hbonds / HBondSet.hh
legacy_sewing / conformation / Assembly.ccsequence / MatrixScoringScheme.hh
legacy_sewing / conformation / Assembly.ccscoring / motif / motif_hash_stuff.hh
legacy_sewing / conformation / Assembly.ccpose / PDBInfo.hh
legacy_sewing / conformation / Assembly.ccpose / Pose.hh
legacy_sewing / conformation / Assembly.ccpose / motif / reference_frames.hh
legacy_sewing / conformation / Assembly.ccconformation / Residue.functions.hh
legacy_sewing / conformation / Assembly.ccconformation / ResidueFactory.hh
legacy_sewing / conformation / Assembly.ccscoring / constraints / ResidueTypeConstraint.hh
legacy_sewing / conformation / Assembly.ccchemical / ResidueTypeSet.hh
legacy_sewing / conformation / Assembly.ccscoring / ScoreFunction.hh
legacy_sewing / conformation / Assembly.ccscoring / ScoreFunctionFactory.hh
legacy_sewing / conformation / Assembly.ccselect / util / SelectResiduesByLayer.hh
legacy_sewing / conformation / Assembly.ccsequence / SequenceProfile.hh
legacy_sewing / conformation / Assembly.ccpose / subpose_manipulation_util.hh
legacy_sewing / conformation / Assembly.ccutil / SwitchResidueTypeSet.hh
legacy_sewing / conformation / Assembly.ccpack / task / TaskFactory.hh
legacy_sewing / conformation / Assembly.ccpack / task / operation / TaskOperations.hh
legacy_sewing / conformation / Assembly.ccscoring / TenANeighborGraph.hh
legacy_sewing / conformation / Assembly.cctypes.hh
legacy_sewing / conformation / Assembly.ccscoring / motif / util.hh
legacy_sewing / conformation / Assembly.ccchemical / VariantType.hh
legacy_sewing / conformation / Assembly.hhpose / Pose.hh
legacy_sewing / conformation / Assembly.hhpack / task / TaskFactory.fwd.hh
sewing / movers / AssemblyMover.ccpose / extra_pose_info_util.hh
sewing / movers / AssemblyMover.ccpose / Pose.hh
sewing / movers / AssemblyMover.hhpose / Pose.fwd.hh
sewing / movers / AssemblyMover.hhpose / Pose.hh
sewing / requirements / AssemblyRequirement.hhpose / Pose.fwd.hh
sewing / requirements / AssemblyRequirementFactory.hhpose / Pose.fwd.hh
sewing / scoring / AssemblyScorer.hhpose / Pose.fwd.hh
sewing / scoring / AssemblyScorer.hhtypes.hh
sewing / scoring / AssemblyScorerFactory.hhpose / Pose.fwd.hh
topology_broker / AsymFoldandDockClaimer.ccconformation / Conformation.hh
topology_broker / AsymFoldandDockClaimer.ccpose / PDBInfo.hh
topology_broker / AsymFoldandDockClaimer.hhpose / Pose.hh
topology_broker / AsymFoldandDockClaimer.hhscoring / ScoreFunction.fwd.hh
topology_broker / AsymFoldandDockClaimer.hhtypes.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.ccconformation / Conformation.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.cckinematics / FoldTree.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.ccpose / Pose.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.ccconformation / Residue.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockMoveRbJumpMover.hhpose / Pose.fwd.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.cckinematics / MoveMap.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.ccscoring / ScoreFunction.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.ccscoring / ScoreFunctionFactory.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.hhpose / Pose.fwd.hh
simple_moves / asym_fold_and_dock / AsymFoldandDockRbTrialMover.hhscoring / ScoreFunction.hh
canonical_sampling / AsyncMPITemperingBase.ccscoring / ScoreFunction.hh
canonical_sampling / AsyncMPITemperingBase.ccpack / task / TaskFactory.hh
canonical_sampling / AsyncMPITemperingBase.ccpack / task / operation / TaskOperations.hh
canonical_sampling / AsyncMPITemperingBase.cctypes.hh
canonical_sampling / AsyncMPITemperingBase.hhpose / Pose.fwd.hh
canonical_sampling / AsyncMPITemperingBase.hhtypes.hh
features / AtomAtomPairFeatures.ccchemical / AA.hh
features / AtomAtomPairFeatures.ccchemical / AtomType.hh
features / AtomAtomPairFeatures.ccchemical / AtomTypeSet.hh
features / AtomAtomPairFeatures.ccchemical / ChemicalManager.hh
features / AtomAtomPairFeatures.ccconformation / Conformation.hh
features / AtomAtomPairFeatures.ccscoring / Energies.hh
features / AtomAtomPairFeatures.ccpose / Pose.hh
features / AtomAtomPairFeatures.ccconformation / Residue.hh
features / AtomAtomPairFeatures.ccchemical / ResidueType.fwd.hh
features / AtomAtomPairFeatures.ccscoring / TenANeighborGraph.hh
features / AtomAtomPairFeatures.cctypes.hh
features / AtomAtomPairFeatures.hhpose / Pose.fwd.hh
features / AtomAtomPairFeatures.hhtypes.hh
features / AtomAtomPairFeaturesCreator.hhtypes.hh
frag_picker / scores / AtomBasedConstraintsScore.ccid / NamedAtomID.hh
frag_picker / scores / AtomBasedConstraintsScore.ccpose / Pose.hh
frag_picker / scores / AtomBasedConstraintsScore.ccchemical / ResidueType.hh
relax / AtomCoordinateCstMover.ccscoring / constraints / AmbiguousConstraint.hh
relax / AtomCoordinateCstMover.ccid / AtomID.hh
relax / AtomCoordinateCstMover.ccscoring / constraints / BoundConstraint.hh
relax / AtomCoordinateCstMover.ccio / pdb / build_pose_as_is.hh
relax / AtomCoordinateCstMover.ccscoring / constraints / CoordinateConstraint.hh
relax / AtomCoordinateCstMover.cckinematics / FoldTree.hh
relax / AtomCoordinateCstMover.ccscoring / func / HarmonicFunc.hh
relax / AtomCoordinateCstMover.ccimport_pose / import_pose.hh
relax / AtomCoordinateCstMover.ccpose / PDBInfo.hh
relax / AtomCoordinateCstMover.ccpose / Pose.hh
relax / AtomCoordinateCstMover.ccconformation / Residue.hh
relax / AtomCoordinateCstMover.ccscoring / ScoreFunction.hh
relax / AtomCoordinateCstMover.ccid / SequenceMapping.hh
relax / AtomCoordinateCstMover.ccpack / task / TaskFactory.hh
relax / AtomCoordinateCstMover.ccpose / util.hh
relax / AtomCoordinateCstMover.ccsequence / util.hh
relax / AtomCoordinateCstMover.hhscoring / constraints / Constraint.fwd.hh
relax / AtomCoordinateCstMover.hhpose / Pose.fwd.hh
relax / AtomCoordinateCstMover.hhselect / residue_selector / ResidueSelector.fwd.hh
relax / AtomCoordinateCstMover.hhid / SequenceMapping.fwd.hh
relax / AtomCoordinateCstMover.hhpack / task / TaskFactory.fwd.hh
relax / AtomCoordinateCstMover.hhtypes.hh
ligand_docking / AtomCountFilter.ccpose / chains_util.hh
ligand_docking / AtomCountFilter.ccconformation / Conformation.hh
ligand_docking / AtomCountFilter.ccpose / Pose.hh
ligand_docking / AtomCountFilter.cctypes.hh
ligand_docking / AtomCountFilter.ccpose / util.hh
ligand_docking / AtomCountFilter.hhtypes.hh
protein_interface_design / filters / AtomicContactCountFilter.ccchemical / AtomType.hh
protein_interface_design / filters / AtomicContactCountFilter.ccconformation / Conformation.hh
protein_interface_design / filters / AtomicContactCountFilter.ccscoring / dssp / Dssp.hh
protein_interface_design / filters / AtomicContactCountFilter.cckinematics / FoldTree.hh
protein_interface_design / filters / AtomicContactCountFilter.ccpack / make_symmetric_task.hh
protein_interface_design / filters / AtomicContactCountFilter.ccpose / Pose.hh
protein_interface_design / filters / AtomicContactCountFilter.ccconformation / Residue.hh
protein_interface_design / filters / AtomicContactCountFilter.ccscoring / ScoreFunction.hh
protein_interface_design / filters / AtomicContactCountFilter.ccscoring / ScoreType.hh
protein_interface_design / filters / AtomicContactCountFilter.ccconformation / symmetry / SymmetryInfo.hh
protein_interface_design / filters / AtomicContactCountFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / AtomicContactCountFilter.ccpack / task / operation / TaskOperation.hh
protein_interface_design / filters / AtomicContactCountFilter.cctypes.hh
protein_interface_design / filters / AtomicContactCountFilter.ccpose / symmetry / util.hh
protein_interface_design / filters / AtomicContactCountFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / AtomicContactCountFilter.hhscoring / ScoreFunction.hh
protein_interface_design / filters / AtomicContactCountFilter.hhscoring / ScoreType.hh
protein_interface_design / filters / AtomicContactCountFilter.hhpack / task / TaskFactory.fwd.hh
protein_interface_design / filters / AtomicContactCountFilter.hhtypes.hh
simple_filters / AtomicContactFilter.ccpose / Pose.hh
simple_filters / AtomicContactFilter.ccconformation / Residue.hh
simple_filters / AtomicContactFilter.ccselect / residue_selector / ResidueIndexSelector.hh
simple_filters / AtomicContactFilter.ccselect / residue_selector / ResidueSelector.hh
simple_filters / AtomicContactFilter.ccselect / residue_selector / ResidueSpanSelector.hh
simple_filters / AtomicContactFilter.ccpose / selection.hh
simple_filters / AtomicContactFilter.cctypes.hh
simple_filters / AtomicContactFilter.ccselect / util.hh
simple_filters / AtomicContactFilter.hhpose / Pose.fwd.hh
simple_filters / AtomicContactFilter.hhselect / residue_selector / ResidueSelector.fwd.hh
simple_filters / AtomicContactFilter.hhtypes.hh
simple_filters / AtomicDistanceFilter.ccchemical / AtomType.hh
simple_filters / AtomicDistanceFilter.ccpose / Pose.hh
simple_filters / AtomicDistanceFilter.ccconformation / Residue.hh
simple_filters / AtomicDistanceFilter.ccpose / ResidueIndexDescription.hh
simple_filters / AtomicDistanceFilter.ccselect / residue_selector / ResidueSelector.hh
simple_filters / AtomicDistanceFilter.ccpose / selection.hh
simple_filters / AtomicDistanceFilter.cctypes.hh
simple_filters / AtomicDistanceFilter.ccselect / residue_selector / util.hh
simple_filters / AtomicDistanceFilter.hhpose / Pose.fwd.hh
simple_filters / AtomicDistanceFilter.hhpose / ResidueIndexDescription.fwd.hh
simple_filters / AtomicDistanceFilter.hhselect / residue_selector / ResidueSelector.fwd.hh
simple_filters / AtomicDistanceFilter.hhtypes.hh
features / AtomInResidueAtomInResiduePairFeatures.ccchemical / AA.hh
features / AtomInResidueAtomInResiduePairFeatures.ccconformation / Conformation.hh
features / AtomInResidueAtomInResiduePairFeatures.ccscoring / Energies.hh
features / AtomInResidueAtomInResiduePairFeatures.ccpose / Pose.hh
features / AtomInResidueAtomInResiduePairFeatures.ccconformation / Residue.hh
features / AtomInResidueAtomInResiduePairFeatures.ccchemical / ResidueType.fwd.hh
features / AtomInResidueAtomInResiduePairFeatures.ccscoring / TenANeighborGraph.hh
features / AtomInResidueAtomInResiduePairFeatures.cctypes.hh
features / AtomInResidueAtomInResiduePairFeatures.hhpose / Pose.fwd.hh
features / AtomInResidueAtomInResiduePairFeatures.hhtypes.hh
features / AtomInResidueAtomInResiduePairFeaturesCreator.hhtypes.hh
constraint_generator / AtomPairConstraintGenerator.ccscoring / constraints / AtomPairConstraint.hh
constraint_generator / AtomPairConstraintGenerator.ccscoring / func / HarmonicFunc.hh
constraint_generator / AtomPairConstraintGenerator.ccselect / residue_selector / NotResidueSelector.hh
constraint_generator / AtomPairConstraintGenerator.ccid / SequenceMapping.hh
constraint_generator / AtomPairConstraintGenerator.ccscoring / func / SOGFunc.hh
constraint_generator / AtomPairConstraintGenerator.ccselect / residue_selector / TrueResidueSelector.hh
constraint_generator / AtomPairConstraintGenerator.ccselect / residue_selector / util.hh
constraint_generator / AtomPairConstraintGenerator.ccpose / util.hh
constraint_generator / AtomPairConstraintGenerator.hhscoring / constraints / Constraint.fwd.hh
constraint_generator / AtomPairConstraintGenerator.hhpose / Pose.fwd.hh
constraint_generator / AtomPairConstraintGenerator.hhconformation / Residue.fwd.hh
constraint_generator / AtomPairConstraintGenerator.hhselect / residue_selector / ResidueSelector.fwd.hh
constraint_generator / AtomPairConstraintGenerator.hhtypes.hh
frag_picker / scores / AtomPairConstraintsScore.ccscoring / func / Func.hh
frag_picker / scores / AtomPairConstraintsScore.ccscoring / func / FuncFactory.hh
frag_picker / scores / AtomPairConstraintsScore.hhscoring / func / Func.fwd.hh
frag_picker / scores / AtomPairConstraintsScore.hhscoring / func / Func.hh
frag_picker / scores / AtomPairConstraintsScore.hhscoring / func / FuncFactory.hh
jd2 / AtomTreeDiffJobInputter.ccimport_pose / import_pose.hh
jd2 / AtomTreeDiffJobInputter.ccpose / Pose.hh
jd2 / AtomTreeDiffJobInputter.hhimport_pose / atom_tree_diffs / atom_tree_diff.hh
jd2 / AtomTreeDiffJobInputter.hhpose / Pose.fwd.hh
jd2 / AtomTreeDiffJobOutputter.ccimport_pose / atom_tree_diffs / atom_tree_diff.hh
jd2 / AtomTreeDiffJobOutputter.ccpose / Pose.hh
jd2 / AtomTreeDiffJobOutputter.hhimport_pose / atom_tree_diffs / atom_tree_diff.hh
jd2 / AtomTreeDiffJobOutputter.hhpose / Pose.hh
features / AtomTypesFeatures.ccchemical / AtomType.hh
features / AtomTypesFeatures.ccchemical / AtomTypeDatabaseIO.hh
features / AtomTypesFeatures.ccchemical / AtomTypeSet.hh
features / AtomTypesFeatures.ccpose / Pose.hh
features / AtomTypesFeatures.ccconformation / Residue.hh
features / AtomTypesFeatures.ccchemical / ResidueType.hh
features / AtomTypesFeatures.cctypes.hh
features / AtomTypesFeatures.hhchemical / AtomTypeDatabaseIO.hh
features / AtomTypesFeatures.hhtypes.hh
features / AtomTypesFeaturesCreator.hhtypes.hh
qsar / scoring_grid / AtrGrid.ccpose / Pose.hh
qsar / scoring_grid / AtrGrid.ccconformation / Residue.hh
environment / AutoCutData.hhtypes.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccscoring / constraints / AngleConstraint.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccscoring / constraints / AtomPairConstraint.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccscoring / constraints / BoundConstraint.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccscoring / func / CircularHarmonicFunc.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccscoring / func / Func.fwd.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccscoring / func / HarmonicFunc.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccconformation / Residue.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccselect / residue_selector / ResidueIndexSelector.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccselect / residue_selector / ResidueRanges.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccselect / residue_selector / SecondaryStructureSelector.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccid / SequenceMapping.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccscoring / func / SOGFunc.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccselect / residue_selector / TrueResidueSelector.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccselect / residue_selector / util.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.ccpose / util.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.hhscoring / constraints / Constraint.fwd.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.hhscoring / func / Func.fwd.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.hhpose / Pose.fwd.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.hhconformation / Residue.fwd.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.hhselect / residue_selector / ResidueSelector.fwd.hh
fold_from_loops / constraint_generator / AutomaticSheetConstraintGenerator.hhtypes.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / Energies.hh
rbsegment_relax / AutoRBRelaxMover.ccfragment / FragSet.hh
rbsegment_relax / AutoRBRelaxMover.cckinematics / Jump.hh
rbsegment_relax / AutoRBRelaxMover.cckinematics / MoveMap.hh
rbsegment_relax / AutoRBRelaxMover.ccpack / task / operation / NoRepackDisulfides.hh
rbsegment_relax / AutoRBRelaxMover.ccpose / Pose.hh
rbsegment_relax / AutoRBRelaxMover.ccconformation / Residue.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / ScoreFunction.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / ScoreFunctionFactory.hh
rbsegment_relax / AutoRBRelaxMover.ccpack / task / TaskFactory.hh
rbsegment_relax / AutoRBRelaxMover.ccpack / task / operation / TaskOperations.hh
rbsegment_relax / AutoRBRelaxMover.cctypes.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / constraints / util.hh
rbsegment_relax / AutoRBRelaxMover.ccscoring / electron_density / util.hh
rbsegment_relax / AutoRBRelaxMover.ccpose / util.hh
rbsegment_relax / AutoRBRelaxMover.hhfragment / FragSet.fwd.hh
rbsegment_relax / AutoRBRelaxMover.hhpose / Pose.fwd.hh
rbsegment_relax / AutoRBRelaxMover.hhscoring / ScoreFunction.fwd.hh
rbsegment_relax / AutoRBRelaxMover.hhpack / task / TaskFactory.fwd.hh
protein_interface_design / filters / AverageDegreeFilter.ccconformation / Conformation.hh
protein_interface_design / filters / AverageDegreeFilter.ccpack / task / PackerTask.hh
protein_interface_design / filters / AverageDegreeFilter.ccpose / Pose.hh
protein_interface_design / filters / AverageDegreeFilter.ccconformation / Residue.hh
protein_interface_design / filters / AverageDegreeFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / AverageDegreeFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / AverageDegreeFilter.hhpack / task / TaskFactory.fwd.hh
simple_filters / AveragePathLengthFilter.ccpose / Pose.hh
simple_filters / AveragePathLengthFilter.ccconformation / Residue.hh
simple_filters / AveragePathLengthFilter.ccchemical / ResidueTypeSet.hh
simple_filters / AveragePathLengthFilter.hhpose / Pose.fwd.hh
simple_filters / AveragePathLengthFilter.hhchemical / ResidueTypeSet.fwd.hh
simple_filters / AveragePathLengthFilter.hhscoring / ScoreFunction.hh
simple_filters / AveragePathLengthFilter.hhtypes.hh
loophash / BackboneDB.ccpose / extra_pose_info_util.hh
loophash / BackboneDB.cckinematics / FoldTree.hh
loophash / BackboneDB.cckinematics / Jump.hh
loophash / BackboneDB.ccpose / Pose.hh
loophash / BackboneDB.cckinematics / RT.hh
loophash / BackboneDB.ccpose / util.hh
loophash / BackboneDB.hhpose / Pose.fwd.hh
loophash / BackboneDB.hhtypes.hh
helical_bundle / BackboneGridSampler.ccid / AtomID.hh
helical_bundle / BackboneGridSampler.ccid / AtomID_Map.hh
helical_bundle / BackboneGridSampler.ccscoring / Energies.hh
helical_bundle / BackboneGridSampler.ccid / NamedAtomID.hh
helical_bundle / BackboneGridSampler.ccpose / Pose.hh
helical_bundle / BackboneGridSampler.ccscoring / rms_util.hh
helical_bundle / BackboneGridSampler.ccid / TorsionID.hh
helical_bundle / BackboneGridSampler.cctypes.hh
helical_bundle / BackboneGridSampler.ccpose / util.tmpl.hh
helical_bundle / BackboneGridSampler.ccpose / variant_util.hh
helical_bundle / BackboneGridSampler.ccchemical / VariantType.hh
helical_bundle / BackboneGridSampler.hhid / AtomID.hh
helical_bundle / BackboneGridSampler.hhgrid / CartGrid.fwd.hh
helical_bundle / BackboneGridSampler.hhconformation / Residue.hh
helical_bundle / BackboneGridSampler.hhscoring / ScoreFunction.hh
helical_bundle / BackboneGridSampler.hhscoring / ScoreFunctionFactory.hh
helical_bundle / BackboneGridSamplerHelper.hhconformation / Residue.hh
helical_bundle / BackboneGridSamplerHelper.hhtypes.hh
simple_moves / BackboneMover.ccid / AtomID.hh
simple_moves / BackboneMover.cckinematics / AtomTree.hh
simple_moves / BackboneMover.ccconformation / Conformation.hh
simple_moves / BackboneMover.ccid / DOF_ID_Range.hh
simple_moves / BackboneMover.ccscoring / Energies.hh
simple_moves / BackboneMover.ccconformation / carbohydrates / GlycanTreeSet.hh
simple_moves / BackboneMover.cckinematics / MoveMap.hh
simple_moves / BackboneMover.ccselect / movemap / MoveMapFactory.hh
simple_moves / BackboneMover.ccpose / Pose.hh
simple_moves / BackboneMover.ccscoring / Ramachandran.hh
simple_moves / BackboneMover.ccconformation / Residue.hh
simple_moves / BackboneMover.ccselect / residue_selector / ResidueSelector.hh
simple_moves / BackboneMover.ccscoring / ScoreFunction.hh
simple_moves / BackboneMover.ccscoring / ScoringManager.hh
simple_moves / BackboneMover.ccid / TorsionID_Range.hh
simple_moves / BackboneMover.ccpose / carbohydrates / util.hh
simple_moves / BackboneMover.ccpose / symmetry / util.hh
simple_moves / BackboneMover.ccconformation / carbohydrates / util.hh
simple_moves / BackboneMover.ccconformation / util.hh
simple_moves / BackboneMover.ccselect / residue_selector / util.hh
simple_moves / BackboneMover.hhconformation / Conformation.fwd.hh
simple_moves / BackboneMover.hhid / DOF_ID_Range.fwd.hh
simple_moves / BackboneMover.hhkinematics / MoveMap.fwd.hh
simple_moves / BackboneMover.hhselect / movemap / MoveMapFactory.fwd.hh
simple_moves / BackboneMover.hhpose / Pose.fwd.hh
simple_moves / BackboneMover.hhselect / residue_selector / ResidueSelector.fwd.hh
simple_moves / BackboneMover.hhscoring / ScoreFunction.fwd.hh
simple_moves / BackboneMover.hhtypes.hh
enzdes / BackboneSampler.cckinematics / FoldTree.hh
enzdes / BackboneSampler.cckinematics / Jump.hh
enzdes / BackboneSampler.cckinematics / MoveMap.hh
enzdes / BackboneSampler.ccpose / Pose.hh
enzdes / BackboneSampler.ccconformation / Residue.hh
enzdes / BackboneSampler.ccscoring / ScoreFunction.hh
enzdes / BackboneSampler.cctypes.hh
enzdes / BackboneSampler.ccpack / rotamer_set / UnboundRotamersOperation.hh
enzdes / BackboneSampler.hhpose / Pose.fwd.hh
enzdes / BackboneSampler.hhtypes.hh
hybridization / BackboneTorsionPerturbation.ccscoring / constraints / AtomPairConstraint.hh
hybridization / BackboneTorsionPerturbation.ccoptimization / AtomTreeMinimizer.hh
hybridization / BackboneTorsionPerturbation.ccoptimization / CartesianMinimizer.hh
hybridization / BackboneTorsionPerturbation.cckinematics / FoldTree.hh
hybridization / BackboneTorsionPerturbation.ccimport_pose / import_pose.hh
hybridization / BackboneTorsionPerturbation.ccoptimization / MinimizerOptions.hh
hybridization / BackboneTorsionPerturbation.cckinematics / MoveMap.hh
hybridization / BackboneTorsionPerturbation.ccpack / task / PackerTask.hh
hybridization / BackboneTorsionPerturbation.ccpose / Pose.hh
hybridization / BackboneTorsionPerturbation.ccscoring / Ramachandran.hh
hybridization / BackboneTorsionPerturbation.ccconformation / Residue.hh
hybridization / BackboneTorsionPerturbation.ccconformation / ResidueFactory.hh
hybridization / BackboneTorsionPerturbation.ccchemical / ResidueType.hh
hybridization / BackboneTorsionPerturbation.ccchemical / ResidueTypeSet.hh
hybridization / BackboneTorsionPerturbation.ccscoring / func / ScalarWeightedFunc.hh
hybridization / BackboneTorsionPerturbation.ccscoring / ScoreFunction.hh
hybridization / BackboneTorsionPerturbation.ccscoring / ScoreFunctionFactory.hh
hybridization / BackboneTorsionPerturbation.ccscoring / ScoringManager.hh
hybridization / BackboneTorsionPerturbation.ccpack / task / TaskFactory.hh
hybridization / BackboneTorsionPerturbation.ccpack / task / operation / TaskOperations.hh
hybridization / BackboneTorsionPerturbation.ccscoring / func / USOGFunc.hh
hybridization / BackboneTorsionPerturbation.ccsequence / util.hh
hybridization / BackboneTorsionPerturbation.ccpose / util.hh
hybridization / BackboneTorsionPerturbation.ccchemical / VariantType.hh
hybridization / BackboneTorsionPerturbation.hhoptimization / AtomTreeMinimizer.hh
hybridization / BackboneTorsionPerturbation.hhoptimization / CartesianMinimizer.hh
hybridization / BackboneTorsionPerturbation.hhoptimization / MinimizerOptions.fwd.hh
hybridization / BackboneTorsionPerturbation.hhkinematics / MoveMap.hh
hybridization / BackboneTorsionPerturbation.hhpose / Pose.fwd.hh
hybridization / BackboneTorsionPerturbation.hhscoring / ScoreFunction.hh
hybridization / BackboneTorsionPerturbation.hhpack / task / TaskFactory.hh
hybridization / BackboneTorsionPerturbation.hhpack / task / operation / TaskOperation.fwd.hh
hybridization / BackboneTorsionPerturbation.hhtypes.hh
hybridization / BackboneTorsionSampler.ccoptimization / AtomTreeMinimizer.hh
hybridization / BackboneTorsionSampler.ccoptimization / CartesianMinimizer.hh
hybridization / BackboneTorsionSampler.cckinematics / FoldTree.hh
hybridization / BackboneTorsionSampler.ccimport_pose / import_pose.hh
hybridization / BackboneTorsionSampler.ccoptimization / MinimizerOptions.hh
hybridization / BackboneTorsionSampler.cckinematics / MoveMap.hh
hybridization / BackboneTorsionSampler.ccpack / task / PackerTask.hh
hybridization / BackboneTorsionSampler.ccpose / Pose.hh
hybridization / BackboneTorsionSampler.ccscoring / Ramachandran.hh
hybridization / BackboneTorsionSampler.ccconformation / Residue.hh
hybridization / BackboneTorsionSampler.ccconformation / ResidueFactory.hh
hybridization / BackboneTorsionSampler.ccchemical / ResidueType.hh
hybridization / BackboneTorsionSampler.ccchemical / ResidueTypeSet.hh
hybridization / BackboneTorsionSampler.ccscoring / ScoreFunction.hh
hybridization / BackboneTorsionSampler.ccscoring / ScoreFunctionFactory.hh
hybridization / BackboneTorsionSampler.ccscoring / ScoringManager.hh
hybridization / BackboneTorsionSampler.ccpack / task / TaskFactory.hh
hybridization / BackboneTorsionSampler.ccpack / task / operation / TaskOperations.hh
hybridization / BackboneTorsionSampler.ccsequence / util.hh
hybridization / BackboneTorsionSampler.ccpose / util.hh
hybridization / BackboneTorsionSampler.ccchemical / VariantType.hh
hybridization / BackboneTorsionSampler.hhoptimization / AtomTreeMinimizer.hh
hybridization / BackboneTorsionSampler.hhoptimization / CartesianMinimizer.hh
hybridization / BackboneTorsionSampler.hhoptimization / MinimizerOptions.fwd.hh
hybridization / BackboneTorsionSampler.hhkinematics / MoveMap.hh
hybridization / BackboneTorsionSampler.hhpose / Pose.fwd.hh
hybridization / BackboneTorsionSampler.hhscoring / ScoreFunction.hh
hybridization / BackboneTorsionSampler.hhpack / task / TaskFactory.hh
hybridization / BackboneTorsionSampler.hhpack / task / operation / TaskOperation.fwd.hh
hybridization / BackboneTorsionSampler.hhtypes.hh
protein_interface_design / movers / BackrubDDMover.ccconformation / Conformation.hh
protein_interface_design / movers / BackrubDDMover.cckinematics / Edge.hh
protein_interface_design / movers / BackrubDDMover.ccscoring / methods / EnergyMethodOptions.hh
protein_interface_design / movers / BackrubDDMover.cckinematics / FoldTree.hh
protein_interface_design / movers / BackrubDDMover.cckinematics / MoveMap.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / operation / NoRepackDisulfides.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / operation / OperateOnCertainResidues.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / BackrubDDMover.ccpose / Pose.hh
protein_interface_design / movers / BackrubDDMover.ccselect / residue_selector / ResidueIndexSelector.hh
protein_interface_design / movers / BackrubDDMover.ccselect / residue_selector / ResidueSelector.hh
protein_interface_design / movers / BackrubDDMover.ccselect / residue_selector / ResidueSpanSelector.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / operation / ResLvlTaskOperations.hh
protein_interface_design / movers / BackrubDDMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / BackrubDDMover.ccpose / selection.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / BackrubDDMover.ccpack / task / operation / TaskOperations.hh
protein_interface_design / movers / BackrubDDMover.cctypes.hh
protein_interface_design / movers / BackrubDDMover.ccselect / util.hh
protein_interface_design / movers / BackrubDDMover.ccselect / residue_selector / util.hh
protein_interface_design / movers / BackrubDDMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / BackrubDDMover.hhselect / residue_selector / ResidueSelector.fwd.hh
protein_interface_design / movers / BackrubDDMover.hhtypes.hh
backrub / BackrubMover.cckinematics / tree / Atom.hh
backrub / BackrubMover.cckinematics / AtomTree.hh
backrub / BackrubMover.ccid / DOF_ID_Range.hh
backrub / BackrubMover.ccscoring / methods / EnergyMethodOptions.hh
backrub / BackrubMover.cckinematics / FoldTree.hh
backrub / BackrubMover.ccselect / jump_selector / JumpIndexSelector.hh
backrub / BackrubMover.ccscoring / mm / MMBondAngleResidueTypeParamSet.hh
backrub / BackrubMover.cckinematics / MoveMap.fwd.hh
backrub / BackrubMover.cckinematics / MoveMap.hh
backrub / BackrubMover.ccselect / movemap / MoveMapFactory.hh
backrub / BackrubMover.ccpose / Pose.hh
backrub / BackrubMover.ccconformation / Residue.hh
backrub / BackrubMover.ccchemical / ResidueType.hh
backrub / BackrubMover.ccscoring / ScoreFunction.hh
backrub / BackrubMover.ccscoring / ScoreType.hh
backrub / BackrubMover.ccpose / selection.hh
backrub / BackrubMover.ccid / TorsionID_Range.hh
backrub / BackrubMover.cctypes.hh
backrub / BackrubMover.ccselect / movemap / util.hh
backrub / BackrubMover.ccselect / util.hh
backrub / BackrubMover.hhkinematics / tree / Atom.fwd.hh
backrub / BackrubMover.hhid / DOF_ID_Range.fwd.hh
backrub / BackrubMover.hhkinematics / MoveMap.fwd.hh
backrub / BackrubMover.hhselect / movemap / MoveMapFactory.fwd.hh
backrub / BackrubMover.hhpose / Pose.fwd.hh
backrub / BackrubMover.hhselect / residue_selector / ResidueSelector.hh
backrub / BackrubProtocol.ccscoring / methods / EnergyMethodOptions.hh
backrub / BackrubProtocol.cckinematics / FoldTree.hh
backrub / BackrubProtocol.ccscoring / hbonds / HBondOptions.hh
backrub / BackrubProtocol.ccimport_pose / import_pose.hh
backrub / BackrubProtocol.cckinematics / Jump.hh
backrub / BackrubProtocol.ccscoring / mm / MMBondAngleResidueTypeParamSet.hh
backrub / BackrubProtocol.cckinematics / MoveMap.hh
backrub / BackrubProtocol.ccpack / task / PackerTask.hh
backrub / BackrubProtocol.ccpose / Pose.hh
backrub / BackrubProtocol.ccselect / residue_selector / ResidueSelector.hh
backrub / BackrubProtocol.ccchemical / ResidueType.hh
backrub / BackrubProtocol.ccscoring / ScoreFunction.hh
backrub / BackrubProtocol.ccscoring / ScoreFunctionFactory.hh
backrub / BackrubProtocol.ccpose / selection.hh
backrub / BackrubProtocol.ccpack / task / TaskFactory.hh
backrub / BackrubProtocol.ccpack / task / operation / TaskOperations.hh
backrub / BackrubProtocol.cctypes.hh
backrub / BackrubProtocol.ccscoring / constraints / util.hh
backrub / BackrubProtocol.hhkinematics / MoveMap.fwd.hh
backrub / BackrubProtocol.hhpose / Pose.hh
backrub / BackrubProtocol.hhselect / residue_selector / ResidueSelector.fwd.hh
backrub / BackrubProtocol.hhscoring / ScoreFunction.fwd.hh
backrub / BackrubProtocol.hhpack / task / TaskFactory.fwd.hh
backrub / BackrubProtocol.hhpack / task / operation / TaskOperation.fwd.hh
backrub / BackrubSegment.cckinematics / tree / Atom.hh
backrub / BackrubSegment.ccid / AtomID.hh
backrub / BackrubSegment.cckinematics / AtomTree.hh
backrub / BackrubSegment.ccpose / Pose.hh
backrub / BackrubSegment.cctypes.hh
backrub / BackrubSegment.hhkinematics / tree / Atom.fwd.hh
backrub / BackrubSegment.hhid / AtomID.hh
backrub / BackrubSegment.hhpose / Pose.fwd.hh
backrub / BackrubSegment.hhtypes.hh
backrub / BackrubSidechainMover.cckinematics / FoldTree.hh
backrub / BackrubSidechainMover.ccpose / PDBInfo.hh
backrub / BackrubSidechainMover.ccpose / Pose.hh
backrub / BackrubSidechainMover.ccconformation / Residue.hh
backrub / BackrubSidechainMover.ccpose / selection.hh
backrub / BackrubSidechainMover.ccpack / task / TaskFactory.hh
backrub / BackrubSidechainMover.ccpack / task / operation / TaskOperations.hh
backrub / BackrubSidechainMover.ccid / TorsionID_Range.hh
backrub / BackrubSidechainMover.cctypes.hh
backrub / BackrubSidechainMover.hhpose / Pose.fwd.hh
backrub / BackrubSidechainMover.hhselect / residue_selector / ResidueSelector.fwd.hh
backrub / BackrubSidechainMover.hhpack / task / TaskFactory.fwd.hh
backrub / BackrubSidechainMover.hhtypes.hh
kinematic_closure / BalancedKicMover.cckinematics / FoldTree.hh
kinematic_closure / BalancedKicMover.ccpose / Pose.hh
kinematic_closure / BalancedKicMover.ccscoring / ScoreFunction.hh
kinematic_closure / BalancedKicMover.ccid / TorsionID.hh
kinematic_closure / BalancedKicMover.ccid / TorsionID_Range.hh
kinematic_closure / BalancedKicMover.ccid / types.hh
kinematic_closure / BalancedKicMover.hhpose / Pose.fwd.hh
kinematic_closure / BalancedKicMover.hhid / TorsionID_Range.hh
stepwise / screener / BaseCentroidScreener.ccpose / Pose.hh
stepwise / screener / BaseCentroidScreener.cckinematics / Stub.hh
stepwise / screener / BaseCentroidScreener.hhpose / Pose.fwd.hh
stepwise / screener / BaseCentroidScreener.hhkinematics / Stub.fwd.hh
filters / BasicFilters.ccpose / Pose.hh
filters / BasicFilters.cctypes.hh
filters / BasicFilters.hhpose / Pose.fwd.hh
filters / BasicFilters.hhtypes.hh
topology_broker / BasicJumpClaimer.cckinematics / FoldTree.hh
topology_broker / BasicJumpClaimer.cckinematics / Jump.hh
topology_broker / BasicJumpClaimer.ccpose / Pose.hh
pose_reporters / BasicPosePropertyReporters.ccscoring / Energies.hh
pose_reporters / BasicPosePropertyReporters.ccpose / extra_pose_info_util.hh
pose_reporters / BasicPosePropertyReporters.ccpose / Pose.hh
pose_reporters / BasicPosePropertyReporters.ccselect / residue_selector / ResidueSelector.hh
pose_reporters / BasicPosePropertyReporters.ccscoring / rms_util.hh
pose_reporters / BasicPosePropertyReporters.ccscoring / rms_util.tmpl.hh
pose_reporters / BasicPosePropertyReporters.ccscoring / ScoreFunctionFactory.hh
pose_reporters / BasicPosePropertyReporters.ccscoring / ScoreType.hh
pose_reporters / BasicPosePropertyReporters.ccscoring / ScoreTypeManager.hh
pose_reporters / BasicPosePropertyReporters.ccpose / selection.hh
pose_reporters / BasicPosePropertyReporters.ccselect / util.hh
pose_reporters / BasicPosePropertyReporters.ccpose / util.hh
pose_reporters / BasicPosePropertyReporters.hhpose / Pose.fwd.hh
pose_reporters / BasicPosePropertyReporters.hhselect / residue_selector / ResidueSelector.fwd.hh
pose_reporters / BasicPosePropertyReporters.hhscoring / ScoreFunction.hh
pose_reporters / BasicPosePropertyReporters.hhtypes.hh
pose_selectors / BasicPoseSelectors.ccpose / extra_pose_info_util.hh
pose_selectors / BasicPoseSelectors.ccpose / Pose.hh
pose_selectors / BasicPoseSelectors.ccpose / util.hh
pose_selectors / BasicPoseSelectors.hhpose / Pose.fwd.hh
pose_selectors / BasicPoseSelectors.hhtypes.hh
sewing / data_storage / Basis.hhtypes.hh
sewing / hashing / BasisMapGenerator.ccpose / PDBInfo.hh
sewing / hashing / BasisMapGenerator.ccpose / Pose.hh
features / BatchFeatures.cctypes.hh
features / BatchFeatures.hhtypes.hh
jd2 / BatchJobInputter.hhpose / Pose.fwd.hh
simple_filters / BatchNrEvaluator.ccio / silent / SilentStruct.hh
simple_filters / BatchNrEvaluator.hhpose / Pose.fwd.hh
simple_filters / BatchNrEvaluator.hhio / silent / silent.fwd.hh
fldsgn / topology / BB_Pos.ccpose / Pose.hh
fldsgn / topology / BB_Pos.ccconformation / Residue.hh
fldsgn / topology / BB_Pos.hhpose / Pose.fwd.hh
fldsgn / topology / BB_Pos.hhchemical / ResidueType.fwd.hh
fldsgn / topology / BB_Pos.hhtypes.hh
topology_broker / claims / BBClaim.hhkinematics / MoveMap.hh
topology_broker / claims / BBClaim.hhtypes.hh
simple_moves / BBConRotMover.ccchemical / AtomType.hh
simple_moves / BBConRotMover.ccconformation / Conformation.hh
simple_moves / BBConRotMover.ccpose / Pose.hh
simple_moves / BBConRotMover.ccconformation / Residue.hh
simple_moves / BBConRotMover.ccchemical / ResidueType.hh
simple_moves / BBConRotMover.cckinematics / Stub.hh
simple_moves / BBConRotMover.hhkinematics / MoveMap.fwd.hh
simple_moves / BBConRotMover.hhpose / Pose.fwd.hh
simple_moves / BBConRotMover.hhconformation / Residue.fwd.hh
simple_moves / BBConRotMover.hhtypes.hh
simple_moves / bb_sampler / BBDihedralSampler.hhpose / Pose.hh
simple_moves / bb_sampler / BBDihedralSampler.hhid / types.hh
simple_moves / BBDihedralSamplerMover.cckinematics / MoveMap.hh
simple_moves / BBDihedralSamplerMover.ccpose / Pose.hh
simple_moves / BBDihedralSamplerMover.ccselect / residue_selector / ResidueSelector.hh
simple_moves / BBDihedralSamplerMover.ccselect / residue_selector / ReturnResidueSubsetSelector.hh
simple_moves / BBDihedralSamplerMover.ccid / types.hh
simple_moves / BBDihedralSamplerMover.cckinematics / util.hh
simple_moves / BBDihedralSamplerMover.ccselect / residue_selector / util.hh
simple_moves / BBDihedralSamplerMover.hhpose / Pose.fwd.hh
simple_moves / BBDihedralSamplerMover.hhselect / residue_selector / ResidueSelector.fwd.hh
simple_moves / BBGaussianMover.ccchemical / AtomType.hh
simple_moves / BBGaussianMover.cckinematics / MoveMap.hh
simple_moves / BBGaussianMover.ccselect / movemap / MoveMapFactory.hh
simple_moves / BBGaussianMover.ccpose / Pose.hh
simple_moves / BBGaussianMover.ccconformation / Residue.hh
simple_moves / BBGaussianMover.hhkinematics / MoveMap.fwd.hh
simple_moves / BBGaussianMover.hhselect / movemap / MoveMapFactory.fwd.hh
simple_moves / BBGaussianMover.hhpose / Pose.fwd.hh
simple_moves / BBGaussianMover.hhconformation / Residue.fwd.hh
simple_moves / BBGaussianMover.hhtypes.hh
forge / components / BDR.ccchemical / AA.hh
forge / components / BDR.ccpose / annotated_sequence.hh
forge / components / BDR.ccpose / metrics / CalculatorFactory.hh
forge / components / BDR.ccscoring / dssp / Dssp.hh
forge / components / BDR.ccscoring / Energies.hh
forge / components / BDR.cckinematics / FoldTree.hh
forge / components / BDR.ccpack / task / operation / NoRepackDisulfides.hh
forge / components / BDR.ccpack / task / PackerTask.hh
forge / components / BDR.ccpose / Pose.hh
forge / components / BDR.ccchemical / ResidueTypeSet.hh
forge / components / BDR.ccscoring / ScoreFunction.hh
forge / components / BDR.ccscoring / ScoreFunctionFactory.hh
forge / components / BDR.ccutil / SwitchResidueTypeSet.hh
forge / components / BDR.ccpack / task / TaskFactory.hh
forge / components / BDR.ccpack / task / operation / TaskOperations.hh
forge / components / BDR.hhpose / Pose.fwd.hh
forge / components / BDR.hhscoring / ScoreFunction.fwd.hh
forge / components / BDR.hhpack / task / TaskFactory.fwd.hh
forge / components / BDR.hhtypes.hh
testing / BenchmarkBuildRotamersMover.ccpose / Pose.hh
testing / BenchmarkBuildRotamersMover.ccscoring / ScoreFunction.hh
testing / BenchmarkBuildRotamersMover.ccscoring / ScoreFunctionFactory.hh
testing / BenchmarkBuildRotamersMover.hhpack / task / PackerTask.fwd.hh
testing / BenchmarkBuildRotamersMover.hhpose / Pose.fwd.hh
testing / BenchmarkBuildRotamersMover.hhscoring / ScoreFunction.fwd.hh
testing / BenchmarkBuildRotamersMover.hhpack / task / TaskFactory.fwd.hh
testing / BenchmarkBuildRotamersMover.hhtypes.hh
protein_interface_design / movers / BestHotspotCstMover.ccid / AtomID.hh
protein_interface_design / movers / BestHotspotCstMover.ccpack / task / PackerTask.hh
protein_interface_design / movers / BestHotspotCstMover.ccpose / PDBInfo.hh
protein_interface_design / movers / BestHotspotCstMover.ccpose / PDBPoseMap.hh
protein_interface_design / movers / BestHotspotCstMover.ccpose / Pose.hh
protein_interface_design / movers / BestHotspotCstMover.ccconformation / Residue.hh
protein_interface_design / movers / BestHotspotCstMover.ccscoring / ScoreFunction.hh
protein_interface_design / movers / BestHotspotCstMover.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / BestHotspotCstMover.ccpack / task / TaskFactory.hh
protein_interface_design / movers / BestHotspotCstMover.hhpose / Pose.fwd.hh
protein_interface_design / movers / BestHotspotCstMover.hhtypes.hh
frag_picker / BestTotalScoreSelector.cctypes.hh
frag_picker / BestTotalScoreSelector.hhtypes.hh
fldsgn / topology / BetaAlphaBetaMotif.cctypes.hh
fldsgn / topology / BetaAlphaBetaMotif.hhtypes.hh
denovo_design / architects / BetaSheetArchitect.ccpose / Pose.hh
denovo_design / architects / BetaSheetArchitect.ccselect / residue_selector / ResidueVector.hh
denovo_design / architects / BetaSheetArchitect.hhpose / Pose.fwd.hh
denovo_design / architects / BetaSheetArchitect.hhselect / residue_selector / ResidueVector.fwd.hh
features / BetaTurnDetection.ccpose / Pose.hh
features / BetaTurnDetection.ccconformation / Residue.hh
features / BetaTurnDetection.hhpose / Pose.fwd.hh
features / BetaTurnDetection.hhtypes.hh
features / BetaTurnDetectionFeatures.ccpose / Pose.hh
features / BetaTurnDetectionFeatures.hhtypes.hh
features / BetaTurnDetectionFeaturesCreator.hhtypes.hh
frag_picker / scores / BFactor.cctypes.hh
frag_picker / scores / BFactor.hhtypes.hh
electron_density / BfactorFittingMover.ccchemical / AtomType.hh
electron_density / BfactorFittingMover.ccchemical / AtomTypeSet.hh
electron_density / BfactorFittingMover.ccoptimization / CartesianMinimizer.hh
electron_density / BfactorFittingMover.ccscoring / electron_density / ElectronDensity.hh
electron_density / BfactorFittingMover.ccscoring / Energies.hh
electron_density / BfactorFittingMover.ccscoring / EnergyGraph.hh
electron_density / BfactorFittingMover.ccoptimization / MinimizerOptions.hh
electron_density / BfactorFittingMover.cckinematics / MoveMap.hh
electron_density / BfactorFittingMover.ccpose / PDBInfo.hh
electron_density / BfactorFittingMover.ccpose / Pose.hh
electron_density / BfactorFittingMover.ccconformation / Residue.hh
electron_density / BfactorFittingMover.ccscoring / ScoreFunction.hh
electron_density / BfactorFittingMover.ccscoring / ScoreFunctionFactory.hh
electron_density / BfactorFittingMover.ccconformation / symmetry / SymmetricConformation.hh
electron_density / BfactorFittingMover.ccconformation / symmetry / SymmetryInfo.hh
electron_density / BfactorFittingMover.ccscoring / cryst / util.hh
electron_density / BfactorFittingMover.ccpose / symmetry / util.hh
electron_density / BfactorFittingMover.ccpose / util.hh
electron_density / BfactorFittingMover.ccscoring / electron_density / util.hh
electron_density / BfactorFittingMover.ccscoring / electron_density / xray_scattering.hh
electron_density / BfactorFittingMover.hhid / AtomID.hh
electron_density / BfactorFittingMover.hhid / AtomID_Map.hh
electron_density / BfactorFittingMover.hhoptimization / Minimizer.hh
electron_density / BfactorFittingMover.hhoptimization / Multifunc.hh
electron_density / BfactorFittingMover.hhscoring / ScoreFunction.hh
electron_density / BfactorFittingMover.hhpack / task / TaskFactory.fwd.hh
nonlocal / BiasedFragmentMover.cckinematics / FoldTree.hh
nonlocal / BiasedFragmentMover.ccfragment / FragSet.hh
nonlocal / BiasedFragmentMover.ccfragment / Frame.hh
nonlocal / BiasedFragmentMover.ccfragment / FrameIterator.hh
nonlocal / BiasedFragmentMover.ccfragment / FrameIteratorWorker_.hh
nonlocal / BiasedFragmentMover.cckinematics / MoveMap.hh
nonlocal / BiasedFragmentMover.ccpose / Pose.hh
nonlocal / BiasedFragmentMover.hhkinematics / FoldTree.fwd.hh
nonlocal / BiasedFragmentMover.hhfragment / FragData.hh
nonlocal / BiasedFragmentMover.hhfragment / FragSet.hh
nonlocal / BiasedFragmentMover.hhfragment / Frame.hh
nonlocal / BiasedFragmentMover.hhkinematics / MoveMap.hh
nonlocal / BiasedFragmentMover.hhpose / Pose.fwd.hh
canonical_sampling / BiasedMonteCarlo.ccscoring / Energies.hh
canonical_sampling / BiasedMonteCarlo.ccpose / Pose.hh
canonical_sampling / BiasedMonteCarlo.ccscoring / ScoreFunction.hh
canonical_sampling / BiasedMonteCarlo.hhtypes.hh
canonical_sampling / BiasEnergy.hhpose / Pose.fwd.hh
canonical_sampling / BiasEnergy.hhtypes.hh
indexed_structure_store / BinaryFragmentStoreBackend.cctypes.hh
constraints_additional / BindingSiteConstraint.ccid / AtomID.hh
constraints_additional / BindingSiteConstraint.ccchemical / ChemicalManager.fwd.hh
constraints_additional / BindingSiteConstraint.ccscoring / constraints / Constraint.hh
constraints_additional / BindingSiteConstraint.ccscoring / EnergyMap.hh
constraints_additional / BindingSiteConstraint.ccscoring / func / Func.hh
constraints_additional / BindingSiteConstraint.cckinematics / Jump.hh
constraints_additional / BindingSiteConstraint.ccpose / Pose.hh
constraints_additional / BindingSiteConstraint.ccconformation / Residue.hh
constraints_additional / BindingSiteConstraint.ccchemical / ResidueType.hh
constraints_additional / BindingSiteConstraint.ccchemical / ResidueTypeSet.hh
constraints_additional / BindingSiteConstraint.ccscoring / ScoreType.hh
constraints_additional / BindingSiteConstraint.ccid / SequenceMapping.hh
constraints_additional / BindingSiteConstraint.ccutil / SwitchResidueTypeSet.hh
constraints_additional / BindingSiteConstraint.ccscoring / func / XYZ_Func.hh
constraints_additional / BindingSiteConstraint.hhid / AtomID.hh
constraints_additional / BindingSiteConstraint.hhscoring / constraints / Constraint.hh
constraints_additional / BindingSiteConstraint.hhscoring / EnergyMap.fwd.hh
constraints_additional / BindingSiteConstraint.hhscoring / func / Func.hh
constraints_additional / BindingSiteConstraint.hhscoring / func / FuncFactory.fwd.hh
constraints_additional / BindingSiteConstraint.hhpose / Pose.fwd.hh
constraints_additional / BindingSiteConstraint.hhscoring / ScoreFunction.fwd.hh
constraints_additional / BindingSiteConstraint.hhscoring / ScoreType.hh
constraints_additional / BindingSiteConstraint.hhscoring / func / XYZ_Func.fwd.hh
protein_interface_design / filters / BindingStrainFilter.ccconformation / Conformation.hh
protein_interface_design / filters / BindingStrainFilter.ccpack / pack_rotamers.hh
protein_interface_design / filters / BindingStrainFilter.ccpack / task / PackerTask.hh
protein_interface_design / filters / BindingStrainFilter.ccpose / Pose.hh
protein_interface_design / filters / BindingStrainFilter.ccscoring / ScoreFunction.hh
protein_interface_design / filters / BindingStrainFilter.ccscoring / ScoreType.hh
protein_interface_design / filters / BindingStrainFilter.ccpack / task / TaskFactory.hh
protein_interface_design / filters / BindingStrainFilter.ccpose / symmetry / util.hh
protein_interface_design / filters / BindingStrainFilter.hhpose / Pose.fwd.hh
protein_interface_design / filters / BindingStrainFilter.hhscoring / ScoreFunction.fwd.hh
protein_interface_design / filters / BindingStrainFilter.hhpack / task / TaskFactory.fwd.hh
parser / BluePrint.ccsequence / ABEGOManager.hh
parser / BluePrint.cckinematics / MoveMap.hh
parser / BluePrint.ccpose / Pose.hh
parser / BluePrint.cctypes.hh
parser / BluePrint.hhkinematics / MoveMap.fwd.hh
parser / BluePrint.hhpose / Pose.fwd.hh
parser / BluePrint.hhtypes.hh
denovo_design / architects / BlueprintArchitect.hhpose / Pose.fwd.hh
fldsgn / BluePrintBDR.ccchemical / AA.hh
fldsgn / BluePrintBDR.ccscoring / constraints / Constraint.hh
fldsgn / BluePrintBDR.ccscoring / constraints / ConstraintSet.hh
fldsgn / BluePrintBDR.ccscoring / dssp / Dssp.hh
fldsgn / BluePrintBDR.ccscoring / Energies.hh
fldsgn / BluePrintBDR.cckinematics / FoldTree.hh
fldsgn / BluePrintBDR.ccimport_pose / import_pose.hh
fldsgn / BluePrintBDR.ccpose / PDBInfo.hh
fldsgn / BluePrintBDR.ccpose / Pose.hh
fldsgn / BluePrintBDR.ccchemical / ResidueTypeSet.hh
fldsgn / BluePrintBDR.ccscoring / ScoreFunction.hh
fldsgn / BluePrintBDR.ccscoring / ScoreFunctionFactory.hh
fldsgn / BluePrintBDR.ccutil / SwitchResidueTypeSet.hh
fldsgn / BluePrintBDR.ccpose / symmetry / util.hh
fldsgn / BluePrintBDR.hhscoring / dssp / Dssp.fwd.hh
fldsgn / BluePrintBDR.hhpose / Pose.fwd.hh
fldsgn / BluePrintBDR.hhscoring / ScoreFunction.fwd.hh
fldsgn / BluePrintBDR.hhtypes.hh
boinc / boinc.hhtypes.hh
boinc / boinc_shmem.hhtypes.hh
jd2 / BOINCJobDistributor.ccio / silent / util.hh
jd2 / BOINCJobDistributor.hhtypes.hh
boinc / BoincPoseObserver.hhpose / signals / ConformationEvent.fwd.hh
boinc / BoincPoseObserver.hhpose / Pose.fwd.hh
protein_interface_design / filters / BoltzmannFilter.hhpose / Pose.fwd.hh
minimization_packing / BoltzmannRotamerMover.ccscoring / Energies.hh
minimization_packing / BoltzmannRotamerMover.ccpack / packer_neighbors.hh
minimization_packing / BoltzmannRotamerMover.ccpack / task / PackerTask.hh
minimization_packing / BoltzmannRotamerMover.ccpose / Pose.hh
minimization_packing / BoltzmannRotamerMover.ccconformation / Residue.hh
minimization_packing / BoltzmannRotamerMover.ccpack / rotamer_set / RotamerSet.hh
minimization_packing / BoltzmannRotamerMover.ccpack / rotamer_set / RotamerSetFactory.hh
minimization_packing / BoltzmannRotamerMover.ccpack / rotamer_set / RotamerSets.hh
minimization_packing / BoltzmannRotamerMover.ccscoring / ScoreFunction.hh
minimization_packing / BoltzmannRotamerMover.ccpack / task / TaskFactory.hh
minimization_packing / BoltzmannRotamerMover.hhpack / task / PackerTask.fwd.hh
minimization_packing / BoltzmannRotamerMover.hhpose / Pose.fwd.hh
minimization_packing / BoltzmannRotamerMover.hhscoring / ScoreFunction.fwd.hh
minimization_packing / BoltzmannRotamerMover.hhpack / task / TaskFactory.fwd.hh
minimization_packing / BoltzmannRotamerMover.hhtypes.hh
kinematic_closure / perturbers / BondAnglePerturber.ccpose / Pose.hh
frag_picker / BoundedCollector.hhtypes.hh
branch_angle / BranchAngleOptimizer.cckinematics / tree / Atom.hh
branch_angle / BranchAngleOptimizer.ccid / AtomID.hh
branch_angle / BranchAngleOptimizer.cckinematics / AtomTree.hh
branch_angle / BranchAngleOptimizer.ccconformation / Conformation.hh
branch_angle / BranchAngleOptimizer.ccscoring / mm / MMBondAngleLibrary.hh
branch_angle / BranchAngleOptimizer.ccscoring / mm / MMBondAngleResidueTypeParam.hh
branch_angle / BranchAngleOptimizer.ccscoring / mm / MMBondAngleResidueTypeParamSet.hh
branch_angle / BranchAngleOptimizer.ccpose / Pose.hh
branch_angle / BranchAngleOptimizer.ccconformation / Residue.hh
branch_angle / BranchAngleOptimizer.ccchemical / ResidueConnection.hh
branch_angle / BranchAngleOptimizer.ccchemical / ResidueType.hh
branch_angle / BranchAngleOptimizer.ccscoring / ScoringManager.hh
branch_angle / BranchAngleOptimizer.hhkinematics / tree / Atom.fwd.hh
branch_angle / BranchAngleOptimizer.hhid / AtomID.fwd.hh
branch_angle / BranchAngleOptimizer.hhscoring / mm / MMBondAngleLibrary.fwd.hh
branch_angle / BranchAngleOptimizer.hhscoring / mm / MMBondAngleResidueTypeParamSet.fwd.hh
branch_angle / BranchAngleOptimizer.hhpose / Pose.fwd.hh
branch_angle / BranchAngleOptimizer.hhtypes.hh
branch_angle / BranchCoef1.hhtypes.hh
branch_angle / BranchCoef2.hhtypes.hh
branch_angle / BranchParam1.hhtypes.hh
branch_angle / BranchParam2.hhtypes.hh
forge / build / Bridge.ccpose / annotated_sequence.hh
forge / build / Bridge.ccconformation / signals / LengthEvent.hh
forge / build / Bridge.cckinematics / MoveMap.hh
forge / build / Bridge.ccpose / Pose.hh
forge / build / Bridge.ccchemical / ResidueTypeSet.hh
forge / build / Bridge.ccconformation / util.hh
denovo_design / movers / BridgeChainsMover.ccpose / Pose.hh
denovo_design / movers / BridgeChainsMover.ccscoring / ScoreFunction.hh
denovo_design / movers / BridgeChainsMover.hhpose / Pose.fwd.hh
denovo_design / movers / BridgeChainsMover.hhscoring / ScoreFunction.fwd.hh
environment / claims / BrokerElements.hhid / DOF_ID.hh
environment / claims / BrokerElements.hhenvironment / LocalPosition.hh
environment / claims / BrokerElements.hhid / TorsionID.hh
abinitio / BrokerMain.ccscoring / constraints / BoundConstraint.hh
abinitio / BrokerMain.ccscoring / constraints / ConstraintIO.hh
abinitio / BrokerMain.ccscoring / func / FuncFactory.hh
abinitio / BrokerMain.ccio / silent / SilentStruct.hh
protein_interface_design / movers / BuildAlaPose.cckinematics / Jump.hh
protein_interface_design / movers / BuildAlaPose.ccpack / pack_rotamers.hh
protein_interface_design / movers / BuildAlaPose.ccpack / task / PackerTask.hh
protein_interface_design / movers / BuildAlaPose.ccconformation / Residue.hh
protein_interface_design / movers / BuildAlaPose.ccscoring / ScoreFunction.hh
protein_interface_design / movers / BuildAlaPose.ccscoring / ScoreFunctionFactory.hh
protein_interface_design / movers / BuildAlaPose.ccpack / task / TaskFactory.hh
protein_interface_design / movers / BuildAlaPose.ccid / types.hh
protein_interface_design / movers / BuildAlaPose.hhpose / Pose.fwd.hh
protein_interface_design / movers / BuildAlaPose.hhtypes.hh
matdes / BuildingBlockInterfaceOperation.ccpose / chains_util.hh
matdes / BuildingBlockInterfaceOperation.ccscoring / Energies.hh
matdes / BuildingBlockInterfaceOperation.ccscoring / EnergyMap.hh
matdes / BuildingBlockInterfaceOperation.ccimport_pose / import_pose.hh
matdes / BuildingBlockInterfaceOperation.ccpack / task / PackerTask.hh
matdes / BuildingBlockInterfaceOperation.ccpose / PDBInfo.hh
matdes / BuildingBlockInterfaceOperation.ccpose / Pose.hh
matdes / BuildingBlockInterfaceOperation.ccconformation / Residue.hh
matdes / BuildingBlockInterfaceOperation.ccchemical / ResidueConnection.hh
matdes / BuildingBlockInterfaceOperation.ccscoring / ScoreFunction.hh
matdes / BuildingBlockInterfaceOperation.ccscoring / ScoreFunctionFactory.hh
matdes / BuildingBlockInterfaceOperation.ccconformation / symmetry / SymmetricConformation.hh
matdes / BuildingBlockInterfaceOperation.ccconformation / symmetry / SymmetryInfo.hh
matdes / BuildingBlockInterfaceOperation.ccpack / task / operation / task_op_schemas.hh
matdes / BuildingBlockInterfaceOperation.ccpose / symmetry / util.hh
matdes / BuildingBlockInterfaceOperation.hhpose / Pose.fwd.hh
matdes / BuildingBlockInterfaceOperation.hhpack / task / operation / TaskOperation.hh
matdes / BuildingBlockInterfaceOperation.hhtypes.hh
matdes / BuildingBlockInterfaceOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
forge / build / BuildInstruction.ccconformation / Conformation.hh
forge / build / BuildInstruction.ccscoring / Energies.hh
forge / build / BuildInstruction.ccconformation / signals / LengthEvent.hh
forge / build / BuildInstruction.ccpose / Pose.hh
forge / build / BuildInstruction.ccchemical / ResidueTypeSet.hh
forge / build / BuildInstruction.hhchemical / ChemicalManager.hh
forge / build / BuildInstruction.hhconformation / signals / LengthEvent.fwd.hh
forge / build / BuildInstruction.hhkinematics / MoveMap.fwd.hh
forge / build / BuildInstruction.hhpose / Pose.fwd.hh
forge / build / BuildInstruction.hhchemical / ResidueTypeSet.fwd.hh
forge / build / BuildInstruction.hhtypes.hh
forge / build / BuildManager.ccpose / annotated_sequence.hh
forge / build / BuildManager.cckinematics / FoldTree.hh
forge / build / BuildManager.cckinematics / MoveMap.hh
forge / build / BuildManager.ccpose / Pose.hh
forge / build / BuildManager.ccconformation / ResidueFactory.hh
forge / build / BuildManager.ccchemical / ResidueType.hh
forge / build / BuildManager.ccchemical / ResidueTypeSet.hh
forge / build / BuildManager.ccid / SequenceMapping.hh
forge / build / BuildManager.ccconformation / util.hh
forge / build / BuildManager.ccpose / variant_util.hh
forge / build / BuildManager.ccchemical / VariantType.hh
forge / build / BuildManager.hhkinematics / MoveMap.fwd.hh
forge / build / BuildManager.hhpose / Pose.fwd.hh
forge / build / BuildManager.hhid / SequenceMapping.fwd.hh
forge / build / BuildManager.hhtypes.hh
motifs / BuildPosition.ccconformation / Residue.hh
motifs / BuildPosition.hhconformation / Residue.fwd.hh
motifs / BuildPosition.hhpack / rotamer_set / RotamerSet.fwd.hh
motifs / BuildPosition.hhtypes.hh
stepwise / modeler / rna / bulge / BulgeApplyMover.ccpose / Pose.hh
stepwise / modeler / rna / bulge / BulgeApplyMover.ccscoring / constraints / util.hh
stepwise / modeler / rna / bulge / BulgeApplyMover.ccpose / rna / util.hh
stepwise / modeler / rna / bulge / BulgeUnApplyMover.ccpose / Pose.hh
stepwise / modeler / rna / bulge / BulgeUnApplyMover.ccscoring / constraints / util.hh
stepwise / modeler / rna / bulge / BulgeUnApplyMover.ccpose / rna / util.hh
match / BumpGrid.ccchemical / AtomType.hh
match / BumpGrid.ccchemical / AtomTypeSet.hh
match / BumpGrid.ccchemical / ChemicalManager.hh
match / BumpGrid.ccpose / Pose.hh
match / BumpGrid.ccconformation / Residue.hh
match / BumpGrid.hhpose / Pose.fwd.hh
match / BumpGrid.hhconformation / Residue.fwd.hh
match / BumpGrid.hhtypes.hh
helical_bundle / BundleGridSampler.ccid / AtomID.hh
helical_bundle / BundleGridSampler.ccid / AtomID_Map.hh
helical_bundle / BundleGridSampler.ccscoring / Energies.hh
helical_bundle / BundleGridSampler.ccoptimization / Minimizer.hh
helical_bundle / BundleGridSampler.ccoptimization / MinimizerOptions.hh
helical_bundle / BundleGridSampler.ccid / NamedAtomID.hh
helical_bundle / BundleGridSampler.ccconformation / parametric / Parameter.hh
helical_bundle / BundleGridSampler.ccpose / Pose.hh
helical_bundle / BundleGridSampler.ccconformation / parametric / RealValuedParameter.hh
helical_bundle / BundleGridSampler.ccscoring / rms_util.hh
helical_bundle / BundleGridSampler.ccid / TorsionID.hh
helical_bundle / BundleGridSampler.cctypes.hh
helical_bundle / BundleGridSampler.ccpose / util.tmpl.hh
helical_bundle / BundleGridSampler.hhid / AtomID.hh
helical_bundle / BundleGridSampler.hhgrid / CartGrid.fwd.hh
helical_bundle / BundleGridSampler.hhconformation / parametric / Parameters.fwd.hh
helical_bundle / BundleGridSampler.hhconformation / parametric / Parameters.hh
helical_bundle / BundleGridSampler.hhconformation / parametric / ParametersSet.fwd.hh
helical_bundle / BundleGridSampler.hhconformation / parametric / ParametersSet.hh
helical_bundle / BundleGridSampler.hhconformation / Residue.hh
helical_bundle / BundleGridSampler.hhscoring / ScoreFunction.hh
helical_bundle / BundleGridSampler.hhscoring / ScoreFunctionFactory.hh
helical_bundle / BundleGridSamplerHelper.hhconformation / Residue.hh
helical_bundle / BundleGridSamplerHelper.hhtypes.hh
helical_bundle / parameters / BundleParameters.ccconformation / parametric / BooleanValuedParameter.hh
helical_bundle / parameters / BundleParameters.ccconformation / parametric / Parameters.hh
helical_bundle / parameters / BundleParameters.ccconformation / parametric / ParametersSet.hh
helical_bundle / parameters / BundleParameters.ccconformation / parametric / RealValuedParameter.hh
helical_bundle / parameters / BundleParameters.ccconformation / parametric / RealVectorValuedParameter.hh
helical_bundle / parameters / BundleParameters.ccconformation / parametric / SizeValuedParameter.hh
helical_bundle / parameters / BundleParameters.ccconformation / parametric / SizeVectorValuedParameter.hh
helical_bundle / parameters / BundleParameters.hhconformation / parametric / Parameters.fwd.hh
helical_bundle / parameters / BundleParameters.hhconformation / parametric / Parameters.hh
helical_bundle / parameters / BundleParameters.hhconformation / parametric / ParametersSet.fwd.hh
helical_bundle / parameters / BundleParameters.hhconformation / parametric / ParametersSet.hh
helical_bundle / parameters / BundleParameters.hhtypes.hh
helical_bundle / parameters / BundleParametersSet.ccconformation / parametric / Parameters.hh
helical_bundle / parameters / BundleParametersSet.ccconformation / parametric / ParametersSet.hh
helical_bundle / parameters / BundleParametersSet.hhconformation / parametric / Parameters.fwd.hh
helical_bundle / parameters / BundleParametersSet.hhconformation / parametric / Parameters.hh
helical_bundle / parameters / BundleParametersSet.hhconformation / parametric / ParametersSet.fwd.hh
helical_bundle / parameters / BundleParametersSet.hhconformation / parametric / ParametersSet.hh
helical_bundle / parameters / BundleParametersSet.hhtypes.hh
helical_bundle / BundleParametrizationCalculator.ccconformation / parametric / BooleanValuedParameter.hh
helical_bundle / BundleParametrizationCalculator.ccconformation / Conformation.hh
helical_bundle / BundleParametrizationCalculator.ccconformation / parametric / Parameter.hh
helical_bundle / BundleParametrizationCalculator.ccconformation / parametric / ParametrizationCalculator.hh
helical_bundle / BundleParametrizationCalculator.ccpose / Pose.hh
helical_bundle / BundleParametrizationCalculator.ccconformation / parametric / RealValuedParameter.hh
helical_bundle / BundleParametrizationCalculator.ccconformation / parametric / RealVectorValuedParameter.hh
helical_bundle / BundleParametrizationCalculator.ccconformation / parametric / SizeValuedParameter.hh
helical_bundle / BundleParametrizationCalculator.ccconformation / parametric / SizeVectorValuedParameter.hh
helical_bundle / BundleParametrizationCalculator.hhconformation / parametric / Parameter.fwd.hh
helical_bundle / BundleParametrizationCalculator.hhconformation / parametric / ParametrizationCalculator.hh
helical_bundle / BundleParametrizationCalculator.hhpose / Pose.fwd.hh
helical_bundle / BundleParametrizationCalculator.hhconformation / parametric / RealValuedParameter.fwd.hh
helical_bundle / BundleParametrizationCalculator.hhtypes.hh
helical_bundle / BundleReporterFilter.ccchemical / AtomType.hh
helical_bundle / BundleReporterFilter.ccchemical / ChemicalManager.fwd.hh
helical_bundle / BundleReporterFilter.ccscoring / Energies.hh
helical_bundle / BundleReporterFilter.ccpose / Pose.hh
helical_bundle / BundleReporterFilter.ccscoring / ScoreFunction.hh
helical_bundle / BundleReporterFilter.ccscoring / ScoreFunctionFactory.hh
helical_bundle / BundleReporterFilter.ccscoring / ScoreType.hh
helical_bundle / BundleReporterFilter.ccscoring / ScoreTypeManager.hh
helical_bundle / BundleReporterFilter.ccutil / SwitchResidueTypeSet.hh
helical_bundle / BundleReporterFilter.ccpose / util.hh
helical_bundle / BundleReporterFilter.hhpose / Pose.fwd.hh
helical_bundle / BundleReporterFilter.hhscoring / ScoreFunction.hh
helical_bundle / BundleReporterFilter.hhscoring / ScoreType.hh
helical_bundle / BundleReporterFilter.hhtypes.hh
simple_filters / BuriedSurfaceAreaFilter.ccid / AtomID_Map.hh
simple_filters / BuriedSurfaceAreaFilter.ccchemical / AtomType.hh
simple_filters / BuriedSurfaceAreaFilter.ccpose / metrics / CalculatorFactory.hh
simple_filters / BuriedSurfaceAreaFilter.ccpose / Pose.hh
simple_filters / BuriedSurfaceAreaFilter.ccconformation / Residue.hh
simple_filters / BuriedSurfaceAreaFilter.ccselect / residue_selector / ResidueSelector.hh
simple_filters / BuriedSurfaceAreaFilter.ccchemical / ResidueType.hh
simple_filters / BuriedSurfaceAreaFilter.ccscoring / sasa.hh
simple_filters / BuriedSurfaceAreaFilter.ccselect / residue_selector / util.hh
simple_filters / BuriedSurfaceAreaFilter.hhpose / Pose.fwd.hh
simple_filters / BuriedSurfaceAreaFilter.hhselect / residue_selector / ResidueSelector.fwd.hh
simple_filters / BuriedUnsatHbondFilter.ccpose / Pose.hh
simple_filters / BuriedUnsatHbondFilter.ccconformation / Residue.hh
simple_filters / BuriedUnsatHbondFilter.ccselect / residue_selector / ResidueSelector.hh
simple_filters / BuriedUnsatHbondFilter.ccscoring / ScoreFunction.hh
simple_filters / BuriedUnsatHbondFilter.ccscoring / ScoreFunctionFactory.hh
simple_filters / BuriedUnsatHbondFilter.ccpose / subpose_manipulation_util.hh
simple_filters / BuriedUnsatHbondFilter.ccconformation / symmetry / SymDof.hh
simple_filters / BuriedUnsatHbondFilter.ccconformation / symmetry / SymmetricConformation.hh
simple_filters / BuriedUnsatHbondFilter.ccconformation / symmetry / SymmetryInfo.hh
simple_filters / BuriedUnsatHbondFilter.ccpack / task / TaskFactory.hh
simple_filters / BuriedUnsatHbondFilter.ccselect / residue_selector / util.hh
simple_filters / BuriedUnsatHbondFilter.ccconformation / symmetry / util.hh
simple_filters / BuriedUnsatHbondFilter.ccpose / symmetry / util.hh
simple_filters / BuriedUnsatHbondFilter.ccscoring / atomic_depth / util.hh
simple_filters / BuriedUnsatHbondFilter.ccpose / util.tmpl.hh
simple_filters / BuriedUnsatHbondFilter.hhid / AtomID_Map.hh
simple_filters / BuriedUnsatHbondFilter.hhpose / Pose.fwd.hh
simple_filters / BuriedUnsatHbondFilter.hhselect / residue_selector / ResidueSelector.hh
simple_filters / BuriedUnsatHbondFilter.hhscoring / ScoreFunction.fwd.hh
simple_filters / BuriedUnsatHbondFilter.hhpack / task / TaskFactory.fwd.hh
buns / BuriedUnsatHbondFilter2.ccpose / PDBInfo.hh
buns / BuriedUnsatHbondFilter2.ccpose / Pose.hh
buns / BuriedUnsatHbondFilter2.ccscoring / ScoreFunction.hh
buns / BuriedUnsatHbondFilter2.ccscoring / ScoreFunctionFactory.hh
buns / BuriedUnsatHbondFilter2.ccpack / task / TaskFactory.hh
buns / BuriedUnsatHbondFilter2.hhpose / Pose.fwd.hh
buns / BuriedUnsatHbondFilter2.hhscoring / ScoreFunction.fwd.hh
buns / BuriedUnsatHbondFilter2.hhpack / task / TaskFactory.fwd.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccchemical / AtomType.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccpose / metrics / CalculatorFactory.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccselect / residue_selector / LayerSelector.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccpose / Pose.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccconformation / Residue.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccselect / residue_selector / ResidueSelector.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccscoring / sasa.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccpose / metrics / simple_calculators / SasaCalculatorLegacy.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccscoring / packing / surf_vol.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.ccpose / util.tmpl.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.hhid / AtomID_Map.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.hhpose / Pose.fwd.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
simple_pose_metric_calculators / BuriedUnsatisfiedPolarsCalculator.hhtypes.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccchemical / AtomType.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccpose / metrics / CalculatorFactory.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccscoring / methods / EnergyMethodOptions.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccscoring / hbonds / HBondOptions.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccpose / PDBInfo.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccpose / Pose.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccconformation / Residue.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccpose / metrics / simple_calculators / SasaCalculatorLegacy.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccscoring / ScoreFunction.hh
buns / BuriedUnsatisfiedPolarsCalculator2.ccscoring / ScoreFunctionFactory.hh
buns / BuriedUnsatisfiedPolarsCalculator2.hhid / AtomID_Map.hh
buns / BuriedUnsatisfiedPolarsCalculator2.hhpose / Pose.fwd.hh
buns / BuriedUnsatisfiedPolarsCalculator2.hhpose / metrics / PoseMetricCalculatorBase.hh
buns / BuriedUnsatisfiedPolarsCalculator2.hhconformation / Residue.fwd.hh
buns / BuriedUnsatisfiedPolarsCalculator2.hhconformation / Residue.hh
buns / BuriedUnsatisfiedPolarsCalculator2.hhtypes.hh
frag_picker / scores / CachingScoringMethod.hhtypes.hh
seeded_abinitio / CAcstGenerator.ccscoring / constraints / AtomPairConstraint.hh
seeded_abinitio / CAcstGenerator.ccchemical / AtomType.hh
seeded_abinitio / CAcstGenerator.ccconformation / Conformation.hh
seeded_abinitio / CAcstGenerator.cckinematics / FoldTree.hh
seeded_abinitio / CAcstGenerator.ccscoring / func / HarmonicFunc.hh
seeded_abinitio / CAcstGenerator.ccimport_pose / import_pose.hh
seeded_abinitio / CAcstGenerator.ccpose / Pose.hh
seeded_abinitio / CAcstGenerator.ccpose / selection.hh
seeded_abinitio / CAcstGenerator.cctypes.hh
seeded_abinitio / CAcstGenerator.hhscoring / constraints / ConstraintSet.hh
seeded_abinitio / CAcstGenerator.hhkinematics / FoldTree.fwd.hh
seeded_abinitio / CAcstGenerator.hhpose / Pose.hh
seeded_abinitio / CAcstGenerator.hhconformation / Residue.fwd.hh
seeded_abinitio / CAcstGenerator.hhtypes.hh
toolbox / CalcInterNeighborGroup.ccconformation / find_neighbors.hh
toolbox / CalcInterNeighborGroup.ccconformation / PointGraph.hh
toolbox / CalcInterNeighborGroup.ccconformation / PointGraphData.hh
toolbox / CalcInterNeighborGroup.ccpose / Pose.hh
toolbox / CalcInterNeighborGroup.hhpose / Pose.fwd.hh
toolbox / CalcInterNeighborGroup.hhpose / metrics / PoseMetricCalculatorBase.hh
toolbox / CalcInterNeighborGroup.hhtypes.hh
filters / CalculatorFilter.ccsimple_metrics / metrics / CalculatorMetric.hh
filters / CalculatorFilter.ccpose / Pose.hh
filters / CalculatorFilter.cctypes.hh
filters / CalculatorFilter.hhsimple_metrics / metrics / CalculatorMetric.fwd.hh
filters / CalculatorFilter.hhpose / Pose.fwd.hh
simple_filters / CamShiftEvaluator.ccpose / Pose.hh
simple_filters / CamShiftEvaluator.ccio / silent / SilentStruct.hh
simple_filters / CamShiftEvaluator.hhpose / Pose.fwd.hh
simple_filters / CamShiftEvaluatorCreator.ccio / silent / silent.fwd.hh
simple_filters / CamShiftEvaluatorCreator.ccio / silent / SilentStruct.hh
simple_filters / CamShiftEvaluatorCreator.hhtypes.hh
frag_picker / CandidatesCollector.hhtypes.hh
canonical_sampling / CanonicalSamplingApplication.ccscoring / methods / EnergyMethodOptions.hh
canonical_sampling / CanonicalSamplingApplication.ccscoring / mm / MMBondAngleResidueTypeParamSet.hh
canonical_sampling / CanonicalSamplingApplication.cckinematics / MoveMap.hh
canonical_sampling / CanonicalSamplingApplication.ccchemical / ResidueType.hh
canonical_sampling / CanonicalSamplingApplication.ccscoring / ScoreFunctionFactory.hh
canonical_sampling / CanonicalSamplingApplication.ccpack / task / TaskFactory.hh
canonical_sampling / CanonicalSamplingApplication.ccpack / task / operation / TaskOperations.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / constraints / AtomPairConstraint.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / func / HarmonicFunc.hh
canonical_sampling / CanonicalSamplingMover.ccpack / task / PackerTask.fwd.hh
canonical_sampling / CanonicalSamplingMover.ccpose / PDBInfo.hh
canonical_sampling / CanonicalSamplingMover.ccpose / Pose.hh
canonical_sampling / CanonicalSamplingMover.ccconformation / Residue.hh
canonical_sampling / CanonicalSamplingMover.ccenergy_methods / RG_Energy_Fast.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / rms_util.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / ScoreFunction.hh
canonical_sampling / CanonicalSamplingMover.ccio / silent / SilentFileData.hh
canonical_sampling / CanonicalSamplingMover.ccio / silent / SilentFileOptions.hh
canonical_sampling / CanonicalSamplingMover.ccio / silent / SilentStruct.hh
canonical_sampling / CanonicalSamplingMover.ccio / silent / SilentStructFactory.hh
canonical_sampling / CanonicalSamplingMover.ccscoring / constraints / util.hh
canonical_sampling / CanonicalSamplingMover.hhpose / Pose.hh
ddg / CartesianddG.ccchemical / AA.hh
ddg / CartesianddG.ccoptimization / AtomTreeMinimizer.hh
ddg / CartesianddG.ccoptimization / CartesianMinimizer.hh
ddg / CartesianddG.ccconformation / Conformation.hh
ddg / CartesianddG.ccscoring / Energies.hh
ddg / CartesianddG.cckinematics / FoldTree.hh
ddg / CartesianddG.ccfragment / FragSet.hh
ddg / CartesianddG.ccfragment / Frame.hh
ddg / CartesianddG.ccoptimization / MinimizerOptions.hh
ddg / CartesianddG.cckinematics / MoveMap.hh
ddg / CartesianddG.ccpack / task / PackerTask.hh
ddg / CartesianddG.ccpose / PDBInfo.hh
ddg / CartesianddG.ccpose / Pose.hh
ddg / CartesianddG.ccconformation / Residue.hh
ddg / CartesianddG.ccselect / residue_selector / ResidueIndexSelector.hh
ddg / CartesianddG.ccselect / residue_selector / ResidueSelector.hh
ddg / CartesianddG.ccscoring / ScoreFunction.hh
ddg / CartesianddG.ccscoring / ScoreFunctionFactory.hh
ddg / CartesianddG.ccpack / task / TaskFactory.hh
ddg / CartesianddG.cctypes.hh
ddg / CartesianddG.ccpose / symmetry / util.hh
ddg / CartesianddG.ccconformation / util.hh
ddg / CartesianddG.hhchemical / AA.hh
ddg / CartesianddG.hhfragment / FragSet.fwd.hh
ddg / CartesianddG.hhpose / Pose.fwd.hh
ddg / CartesianddG.hhscoring / ScoreFunction.fwd.hh
hybridization / CartesianHybridize.ccscoring / constraints / AtomPairConstraint.hh
hybridization / CartesianHybridize.ccoptimization / AtomTreeMinimizer.hh
hybridization / CartesianHybridize.ccpose / datacache / CacheableDataType.hh
hybridization / CartesianHybridize.ccoptimization / CartesianMinimizer.hh
hybridization / CartesianHybridize.ccchemical / ChemicalManager.hh
hybridization / CartesianHybridize.ccfragment / ConstantLengthFragSet.hh
hybridization / CartesianHybridize.ccscoring / dssp / Dssp.hh
hybridization / CartesianHybridize.ccscoring / Energies.hh
hybridization / CartesianHybridize.ccscoring / methods / EnergyMethodOptions.hh
hybridization / CartesianHybridize.cckinematics / FoldTree.hh
hybridization / CartesianHybridize.ccfragment / FragData.hh
hybridization / CartesianHybridize.ccfragment / FragmentIO.hh
hybridization / CartesianHybridize.ccfragment / FragSet.hh
hybridization / CartesianHybridize.ccfragment / Frame.hh
hybridization / CartesianHybridize.ccfragment / FrameIterator.hh
hybridization / CartesianHybridize.ccimport_pose / import_pose.hh
hybridization / CartesianHybridize.ccoptimization / MinimizerOptions.hh
hybridization / CartesianHybridize.cckinematics / MoveMap.hh
hybridization / CartesianHybridize.ccpack / pack_rotamers.hh
hybridization / CartesianHybridize.ccpack / task / PackerTask.hh
hybridization / CartesianHybridize.ccpose / PDBInfo.hh
hybridization / CartesianHybridize.ccpose / Pose.hh
hybridization / CartesianHybridize.ccio / Remarks.hh
hybridization / CartesianHybridize.ccscoring / rms_util.hh
hybridization / CartesianHybridize.ccscoring / func / ScalarWeightedFunc.hh
hybridization / CartesianHybridize.ccscoring / ScoreFunction.hh
hybridization / CartesianHybridize.ccscoring / ScoreFunctionFactory.hh
hybridization / CartesianHybridize.ccsequence / Sequence.hh
hybridization / CartesianHybridize.ccsequence / SequenceAlignment.hh
hybridization / CartesianHybridize.ccid / SequenceMapping.hh
hybridization / CartesianHybridize.ccscoring / func / SOGFunc.hh
hybridization / CartesianHybridize.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
hybridization / CartesianHybridize.ccconformation / symmetry / SymmetricConformation.hh
hybridization / CartesianHybridize.ccconformation / symmetry / SymmetryInfo.hh
hybridization / CartesianHybridize.ccpack / task / TaskFactory.hh
hybridization / CartesianHybridize.ccpack / task / operation / TaskOperations.hh
hybridization / CartesianHybridize.ccpose / symmetry / util.hh
hybridization / CartesianHybridize.ccconformation / util.hh
hybridization / CartesianHybridize.ccpose / util.hh
hybridization / CartesianHybridize.ccsequence / util.hh
hybridization / CartesianHybridize.hhid / AtomID.hh
hybridization / CartesianHybridize.hhid / AtomID_Map.hh
hybridization / CartesianHybridize.hhfragment / FragData.hh
hybridization / CartesianHybridize.hhfragment / FragSet.hh
hybridization / CartesianHybridize.hhutil / kinematics_util.hh
hybridization / CartesianHybridize.hhscoring / ScoreFunction.hh
md / CartesianMD.ccid / AtomID.hh
md / CartesianMD.ccchemical / AtomType.hh
md / CartesianMD.ccoptimization / cartesian_minimize.hh
md / CartesianMD.ccoptimization / CartesianMinimizer.hh
md / CartesianMD.ccoptimization / CartesianMinimizerMap.hh
md / CartesianMD.ccoptimization / CartesianMultifunc.hh
md / CartesianMD.ccchemical / ChemicalManager.hh
md / CartesianMD.ccscoring / constraints / ConstraintSet.hh
md / CartesianMD.ccscoring / constraints / CoordinateConstraint.hh
md / CartesianMD.ccchemical / Element.hh
md / CartesianMD.ccchemical / ElementSet.hh
md / CartesianMD.ccscoring / Energies.hh
md / CartesianMD.ccscoring / EnergyMap.hh
md / CartesianMD.ccscoring / func / HarmonicFunc.hh
md / CartesianMD.ccimport_pose / import_pose.hh
md / CartesianMD.ccoptimization / MinimizerOptions.hh
md / CartesianMD.cckinematics / MoveMap.hh
md / CartesianMD.ccselect / movemap / MoveMapFactory.hh
md / CartesianMD.ccpose / PDBInfo.hh
md / CartesianMD.ccpose / Pose.hh
md / CartesianMD.ccconformation / Residue.hh
md / CartesianMD.ccchemical / ResidueTypeSet.hh
md / CartesianMD.ccscoring / rms_util.hh
md / CartesianMD.ccscoring / ScoreFunction.hh
md / CartesianMD.ccscoring / ScoreType.hh
md / CartesianMD.ccoptimization / types.hh
md / CartesianMD.ccscoring / constraints / util.hh
md / CartesianMD.ccpose / symmetry / util.hh
md / CartesianMD.hhoptimization / CartesianMinimizerMap.hh
md / CartesianMD.hhoptimization / MinimizerOptions.hh
md / CartesianMD.hhselect / movemap / MoveMapFactory.fwd.hh
md / CartesianMD.hhscoring / ScoreFunction.hh
md / CartesianMD.hhoptimization / types.hh
hybridization / CartesianSampler.ccscoring / constraints / AtomPairConstraint.hh
hybridization / CartesianSampler.ccoptimization / AtomTreeMinimizer.hh
hybridization / CartesianSampler.ccpose / datacache / CacheableDataType.hh
hybridization / CartesianSampler.ccoptimization / CartesianMinimizer.hh
hybridization / CartesianSampler.ccchemical / ChemicalManager.hh
hybridization / CartesianSampler.ccfragment / ConstantLengthFragSet.hh
hybridization / CartesianSampler.ccscoring / constraints / ConstraintSet.hh
hybridization / CartesianSampler.ccscoring / constraints / CoordinateConstraint.hh
hybridization / CartesianSampler.ccscoring / electron_density / ElectronDensity.hh
hybridization / CartesianSampler.ccscoring / Energies.hh
hybridization / CartesianSampler.ccscoring / methods / EnergyMethodOptions.hh
hybridization / CartesianSampler.cckinematics / FoldTree.hh
hybridization / CartesianSampler.ccfragment / FragData.hh
hybridization / CartesianSampler.ccfragment / FragmentIO.hh
hybridization / CartesianSampler.ccfragment / FragSet.hh
hybridization / CartesianSampler.ccfragment / Frame.hh
hybridization / CartesianSampler.ccfragment / FrameIterator.hh
hybridization / CartesianSampler.ccscoring / func / HarmonicFunc.hh
hybridization / CartesianSampler.ccimport_pose / import_pose.hh
hybridization / CartesianSampler.ccoptimization / MinimizerOptions.hh
hybridization / CartesianSampler.cckinematics / MoveMap.hh
hybridization / CartesianSampler.ccpack / pack_rotamers.hh
hybridization / CartesianSampler.ccpack / task / PackerTask.hh
hybridization / CartesianSampler.cc