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abinitio → core Relation

File in src/protocols/abinitioIncludes file in src/core
AbrelaxApplication.ccpose / annotated_sequence.hh
AbrelaxApplication.ccfragment / BBTorsionSRFD.hh
AbrelaxApplication.ccscoring / constraints / BoundConstraint.hh
AbrelaxApplication.ccpose / datacache / CacheableDataType.hh
AbrelaxApplication.ccpose / metrics / CalculatorFactory.hh
AbrelaxApplication.ccchemical / ChemicalManager.hh
AbrelaxApplication.ccconformation / Conformation.hh
AbrelaxApplication.ccscoring / constraints / ConstraintFactory.hh
AbrelaxApplication.ccscoring / constraints / ConstraintIO.hh
AbrelaxApplication.ccscoring / constraints / ConstraintSet.hh
AbrelaxApplication.ccenergy_methods / ContactOrderEnergy.hh
AbrelaxApplication.ccio / raw_data / DisulfideFile.hh
AbrelaxApplication.ccscoring / Energies.hh
AbrelaxApplication.ccpose / extra_pose_info_util.hh
AbrelaxApplication.ccfragment / FragData.hh
AbrelaxApplication.ccfragment / FragmentIO.hh
AbrelaxApplication.ccfragment / Frame.hh
AbrelaxApplication.ccfragment / FrameIterator.hh
AbrelaxApplication.ccfragment / FrameIteratorWorker_.hh
AbrelaxApplication.ccfragment / FrameList.hh
AbrelaxApplication.ccscoring / func / Func.hh
AbrelaxApplication.ccscoring / func / FuncFactory.hh
AbrelaxApplication.ccscoring / func / HarmonicFunc.hh
AbrelaxApplication.ccimport_pose / import_pose.hh
AbrelaxApplication.ccscoring / MembraneTopology.hh
AbrelaxApplication.cckinematics / MoveMap.hh
AbrelaxApplication.ccscoring / dssp / PairingsList.hh
AbrelaxApplication.ccpose / Pose.hh
AbrelaxApplication.ccscoring / ScoreFunction.fwd.hh
AbrelaxApplication.ccscoring / ScoreFunctionFactory.hh
AbrelaxApplication.ccscoring / ScoreType.hh
AbrelaxApplication.ccfragment / SecondaryStructure.hh
AbrelaxApplication.ccsequence / Sequence.hh
AbrelaxApplication.ccid / SequenceMapping.hh
AbrelaxApplication.ccio / silent / silent.fwd.hh
AbrelaxApplication.ccio / silent / SilentFileData.hh
AbrelaxApplication.ccio / silent / SilentFileOptions.hh
AbrelaxApplication.ccio / silent / SilentStructFactory.hh
AbrelaxApplication.ccscoring / SS_Killhairpins_Info.hh
AbrelaxApplication.ccscoring / dssp / StrandPairing.hh
AbrelaxApplication.ccutil / SwitchResidueTypeSet.hh
AbrelaxApplication.cctypes.hh
AbrelaxApplication.ccsequence / util.hh
AbrelaxApplication.ccscoring / constraints / util.hh
AbrelaxApplication.ccfragment / util.hh
AbrelaxApplication.ccpose / util.hh
AbrelaxApplication.cckinematics / util.hh
AbrelaxApplication.hhscoring / constraints / ConstraintSet.fwd.hh
AbrelaxApplication.hhfragment / FragSet.fwd.hh
AbrelaxApplication.hhpose / Pose.fwd.hh
AbrelaxApplication.hhscoring / ScoreFunction.fwd.hh
AbrelaxApplication.hhfragment / SecondaryStructure.fwd.hh
AbrelaxApplication.hhio / silent / SilentFileData.fwd.hh
AbrelaxApplication.hhio / silent / SilentFileOptions.fwd.hh
AbrelaxApplication.hhtypes.hh
AbrelaxMover.ccscoring / constraints / ConstraintSet.hh
AbrelaxMover.cckinematics / FoldTree.hh
AbrelaxMover.cckinematics / MoveMap.hh
AbrelaxMover.ccpose / Pose.hh
AbrelaxMover.ccscoring / ScoreFunction.hh
AbrelaxMover.ccscoring / ScoreFunctionFactory.hh
AbrelaxMover.cckinematics / ShortestPathInFoldTree.hh
AbrelaxMover.hhpose / Pose.fwd.hh
AbrelaxMover.hhtypes.hh
abscript / AbscriptLoopCloserCM.ccenvironment / DofPassport.hh
abscript / AbscriptLoopCloserCM.ccfragment / FragmentIO.hh
abscript / AbscriptLoopCloserCM.ccfragment / FragSet.hh
abscript / AbscriptLoopCloserCM.cckinematics / MoveMap.hh
abscript / AbscriptLoopCloserCM.ccscoring / ScoreFunctionFactory.hh
abscript / AbscriptLoopCloserCM.ccselect / residue_selector / TrueResidueSelector.hh
abscript / AbscriptLoopCloserCM.ccselect / residue_selector / util.hh
abscript / AbscriptLoopCloserCM.hhconformation / Conformation.fwd.hh
abscript / AbscriptLoopCloserCM.hhkinematics / FoldTree.fwd.hh
abscript / AbscriptLoopCloserCM.hhfragment / FragSet.hh
abscript / AbscriptLoopCloserCM.hhkinematics / MoveMap.hh
abscript / AbscriptLoopCloserCM.hhselect / residue_selector / ResidueSelector.hh
abscript / AbscriptLoopCloserCM.hhscoring / ScoreFunction.hh
abscript / AbscriptMover.ccscoring / constraints / ConstraintSet.hh
abscript / AbscriptMover.ccscoring / Energies.hh
abscript / AbscriptMover.ccfragment / FragmentIO.hh
abscript / AbscriptMover.ccfragment / FragSet.hh
abscript / AbscriptMover.cckinematics / MoveMap.hh
abscript / AbscriptMover.ccpose / Pose.hh
abscript / AbscriptMover.ccselect / residue_selector / ResidueSelector.fwd.hh
abscript / AbscriptMover.ccscoring / ScoreFunction.hh
abscript / AbscriptMover.ccscoring / ScoreFunctionFactory.hh
abscript / AbscriptMover.ccscoring / ScoreType.hh
abscript / AbscriptMover.ccfragment / SecondaryStructure.hh
abscript / AbscriptMover.cckinematics / ShortestPathInFoldTree.hh
abscript / AbscriptMover.hhpose / Pose.hh
abscript / AbscriptMover.hhselect / residue_selector / ResidueSelector.fwd.hh
abscript / AbscriptMover.hhscoring / ScoreFunction.hh
abscript / AbscriptStageMover.ccscoring / constraints / ConstraintSet.hh
abscript / AbscriptStageMover.ccscoring / Energies.hh
abscript / AbscriptStageMover.ccscoring / methods / EnergyMethodOptions.hh
abscript / AbscriptStageMover.ccpose / Pose.hh
abscript / AbscriptStageMover.ccscoring / ScoreFunction.hh
abscript / AbscriptStageMover.hhscoring / ScoreFunction.hh
AllResiduesChanged.hhfragment / FragSet.fwd.hh
AllResiduesChanged.hhkinematics / MoveMap.hh
AllResiduesChanged.hhpose / Pose.hh
AllResiduesChanged.hhconformation / Residue.hh
BrokerMain.ccscoring / constraints / BoundConstraint.hh
BrokerMain.ccscoring / constraints / ConstraintIO.hh
BrokerMain.ccscoring / func / FuncFactory.hh
BrokerMain.ccio / silent / SilentStruct.hh
ClassicAbinitio.ccscoring / constraints / ConstraintSet.fwd.hh
ClassicAbinitio.ccscoring / constraints / ConstraintSet.hh
ClassicAbinitio.cckinematics / MoveMap.hh
ClassicAbinitio.ccpack / task / PackerTask.hh
ClassicAbinitio.ccpose / Pose.hh
ClassicAbinitio.ccscoring / rms_util.hh
ClassicAbinitio.ccscoring / ScoreFunction.fwd.hh
ClassicAbinitio.ccscoring / ScoreFunctionFactory.hh
ClassicAbinitio.ccscoring / ScoreType.hh
ClassicAbinitio.ccpack / task / TaskFactory.hh
ClassicAbinitio.ccpack / task / operation / TaskOperations.hh
ClassicAbinitio.cctypes.hh
ClassicAbinitio.hhfragment / FragSet.fwd.hh
ClassicAbinitio.hhkinematics / MoveMap.fwd.hh
ClassicAbinitio.hhpose / Pose.fwd.hh
ClassicAbinitio.hhscoring / ScoreFunction.fwd.hh
ClassicAbinitio.hhscoring / ScoreType.hh
ClassicAbinitio.hhtypes.hh
ConstraintFragmentSampler.ccscoring / constraints / ConstraintSet.hh
ConstraintFragmentSampler.ccscoring / Energies.hh
ConstraintFragmentSampler.ccscoring / methods / EnergyMethodOptions.hh
ConstraintFragmentSampler.ccpose / Pose.hh
ConstraintFragmentSampler.ccscoring / ScoreFunction.hh
ConstraintFragmentSampler.ccscoring / ScoreType.hh
ConstraintFragmentSampler.cckinematics / ShortestPathInFoldTree.hh
ConstraintFragmentSampler.cctypes.hh
ConstraintFragmentSampler.hhpose / Pose.fwd.hh
ConstraintFragmentSampler.hhtypes.hh
abscript / ConstraintPreparer.ccscoring / constraints / ConstraintIO.hh
abscript / ConstraintPreparer.ccenvironment / DofPassport.hh
abscript / ConstraintPreparer.ccid / Exceptions.hh
abscript / ConstraintPreparer.cckinematics / ShortestPathInFoldTree.hh
abscript / ConstraintPreparer.ccscoring / constraints / util.hh
abscript / ConstraintPreparer.hhscoring / constraints / ConstraintSet.hh
abscript / ConstraintPreparer.hhpose / Pose.hh
DomainAssembly.ccchemical / ChemicalManager.fwd.hh
DomainAssembly.ccfragment / FragmentIO.hh
DomainAssembly.ccfragment / FragSet.hh
DomainAssembly.cckinematics / MoveMap.hh
DomainAssembly.ccpack / pack_rotamers.hh
DomainAssembly.ccpack / task / PackerTask.hh
DomainAssembly.ccpack / task / ResfileReader.hh
DomainAssembly.ccconformation / Residue.hh
DomainAssembly.ccscoring / ScoreFunctionFactory.hh
DomainAssembly.ccpose / selection.hh
DomainAssembly.ccpack / task / TaskFactory.hh
DomainAssembly.hhfragment / FragSet.fwd.hh
DomainAssembly.hhpose / Pose.fwd.hh
DomainAssembly.hhtypes.hh
DoubleLayerKinematicAbinitio.cckinematics / MoveMap.hh
DoubleLayerKinematicAbinitio.ccpose / Pose.hh
DoubleLayerKinematicAbinitio.cckinematics / util.hh
DoubleLayerKinematicAbinitio.hhpose / Pose.fwd.hh
DoubleLayerKinematicAbinitio.hhtypes.hh
FoldConstraints.ccscoring / constraints / ConstraintSet.hh
FoldConstraints.ccscoring / Energies.hh
FoldConstraints.ccfragment / FragSet.hh
FoldConstraints.cckinematics / MoveMap.hh
FoldConstraints.ccpose / Pose.hh
FoldConstraints.ccscoring / ScoreType.hh
FoldConstraints.cctypes.hh
FoldConstraints.hhkinematics / FoldTree.fwd.hh
FoldConstraints.hhkinematics / MoveMap.fwd.hh
FoldConstraints.hhpose / Pose.fwd.hh
FoldConstraints.hhscoring / ScoreFunction.fwd.hh
FoldConstraints.hhscoring / ScoreType.hh
FoldConstraints.hhkinematics / ShortestPathInFoldTree.fwd.hh
FoldConstraints.hhtypes.hh
abscript / FragmentCM.ccpose / datacache / CacheableDataType.hh
abscript / FragmentCM.ccenvironment / DofPassport.hh
abscript / FragmentCM.ccfragment / FragmentIO.hh
abscript / FragmentCM.ccfragment / FragSet.hh
abscript / FragmentCM.ccenvironment / LocalPosition.hh
abscript / FragmentCM.cckinematics / MoveMap.hh
abscript / FragmentCM.ccpose / Pose.hh
abscript / FragmentCM.ccselect / residue_selector / ResidueSelector.hh
abscript / FragmentCM.ccselect / residue_selector / util.hh
abscript / FragmentCM.hhselect / residue_selector / ResidueSelector.hh
abscript / FragmentJumpCM.ccpose / datacache / CacheableDataType.hh
abscript / FragmentJumpCM.ccenvironment / DofPassport.hh
abscript / FragmentJumpCM.ccfragment / FragSet.hh
abscript / FragmentJumpCM.ccfragment / Frame.hh
abscript / FragmentJumpCM.ccfragment / FrameList.hh
abscript / FragmentJumpCM.ccenvironment / LocalPosition.hh
abscript / FragmentJumpCM.cckinematics / MoveMap.hh
abscript / FragmentJumpCM.ccfragment / OrderedFragSet.hh
abscript / FragmentJumpCM.ccscoring / dssp / PairingsList.hh
abscript / FragmentJumpCM.ccpose / Pose.hh
abscript / FragmentJumpCM.ccselect / residue_selector / ResidueSelector.hh
abscript / FragmentJumpCM.ccfragment / SecondaryStructure.hh
abscript / FragmentJumpCM.ccselect / residue_selector / util.hh
FragmentSampler.ccpose / datacache / CacheableDataType.hh
FragmentSampler.ccscoring / constraints / ConstraintSet.hh
FragmentSampler.cckinematics / Jump.hh
FragmentSampler.ccscoring / MembraneTopology.hh
FragmentSampler.ccpose / Pose.hh
FragmentSampler.ccconformation / Residue.hh
FragmentSampler.ccscoring / ScoreFunction.fwd.hh
FragmentSampler.ccscoring / ScoreFunction.hh
FragmentSampler.ccscoring / ScoreFunctionFactory.hh
FragmentSampler.ccscoring / ScoreType.hh
FragmentSampler.cctypes.hh
FragmentSampler.hhpose / datacache / CacheableDataType.hh
FragmentSampler.hhpose / Pose.fwd.hh
FragmentSampler.hhscoring / ScoreFunction.fwd.hh
FragmentSampler.hhscoring / ScoreType.hh
FragmentSampler.hhtypes.hh
HedgeArchive.ccio / silent / SilentFileData.hh
HedgeArchive.ccio / silent / SilentFileOptions.hh
HedgeArchive.ccio / silent / SilentStruct.hh
HedgeArchive.hhpose / Pose.fwd.hh
HedgeArchive.hhio / silent / silent.fwd.hh
HedgeArchive.hhtypes.hh
IterativeAbrelax.ccpose / Pose.hh
IterativeAbrelax.ccscoring / ScoreFunction.fwd.hh
IterativeAbrelax.ccio / silent / SilentFileData.hh
IterativeAbrelax.ccio / silent / SilentStruct.hh
IterativeAbrelax.cctypes.hh
IterativeAbrelax.hhpose / Pose.fwd.hh
IterativeAbrelax.hhtypes.hh
IterativeBase.ccpose / annotated_sequence.hh
IterativeBase.ccchemical / ChemicalManager.hh
IterativeBase.ccfragment / ConstantLengthFragSet.hh
IterativeBase.ccscoring / constraints / ConstraintIO.hh
IterativeBase.ccscoring / constraints / ConstraintSet.hh
IterativeBase.ccscoring / Energies.hh
IterativeBase.ccfragment / FragmentIO.hh
IterativeBase.ccimport_pose / import_pose.hh
IterativeBase.ccpose / Pose.hh
IterativeBase.ccscoring / ResidualDipolarCoupling.hh
IterativeBase.ccscoring / ScoreFunction.fwd.hh
IterativeBase.ccscoring / ScoreFunctionFactory.hh
IterativeBase.ccscoring / ScoreType.hh
IterativeBase.ccfragment / SecondaryStructure.hh
IterativeBase.ccsequence / Sequence.hh
IterativeBase.ccio / silent / SilentFileData.hh
IterativeBase.ccio / silent / SilentFileOptions.hh
IterativeBase.ccio / silent / SilentStruct.hh
IterativeBase.cctypes.hh
IterativeBase.ccsequence / util.hh
IterativeBase.ccfragment / util.hh
IterativeBase.ccscoring / constraints / util.hh
IterativeBase.ccpose / util.hh
IterativeBase.hhfragment / FragSet.fwd.hh
IterativeBase.hhpose / Pose.fwd.hh
IterativeBase.hhtypes.hh
IterativeCentroid.ccscoring / ScoreFunction.fwd.hh
IterativeCentroid.ccio / silent / SilentFileData.hh
IterativeCentroid.ccio / silent / SilentStruct.hh
IterativeCentroid.cctypes.hh
IterativeCentroid.hhio / silent / SilentStruct.hh
IterativeFullatom.ccscoring / ScoreFunction.fwd.hh
IterativeFullatom.ccscoring / ScoreFunction.hh
IterativeFullatom.ccscoring / ScoreFunctionFactory.hh
IterativeFullatom.ccio / silent / SilentFileData.hh
IterativeFullatom.ccio / silent / SilentFileOptions.hh
IterativeFullatom.ccio / silent / SilentStruct.hh
IterativeFullatom.cctypes.hh
IterativeFullatom.hhpose / Pose.fwd.hh
IterativeFullatom.hhtypes.hh
KinematicAbinitio.ccscoring / constraints / Constraint.fwd.hh
KinematicAbinitio.ccscoring / constraints / ConstraintSet.hh
KinematicAbinitio.ccfragment / FragmentIO.hh
KinematicAbinitio.ccfragment / FragSet.hh
KinematicAbinitio.ccfragment / Frame.hh
KinematicAbinitio.ccfragment / FrameList.hh
KinematicAbinitio.cckinematics / MoveMap.hh
KinematicAbinitio.ccfragment / OrderedFragSet.hh
KinematicAbinitio.ccpose / Pose.hh
KinematicAbinitio.ccio / silent / ProteinSilentStruct.hh
KinematicAbinitio.ccio / silent / ProteinSilentStruct.tmpl.hh
KinematicAbinitio.ccscoring / ScoreFunction.hh
KinematicAbinitio.ccio / silent / SilentFileData.hh
KinematicAbinitio.ccio / silent / SilentFileOptions.hh
KinematicAbinitio.ccscoring / func / SkipViolFunc.hh
KinematicAbinitio.cctypes.hh
KinematicAbinitio.hhscoring / constraints / ConstraintSet.hh
KinematicAbinitio.hhkinematics / FoldTree.fwd.hh
KinematicAbinitio.hhfragment / FragSet.fwd.hh
KinematicAbinitio.hhkinematics / MoveMap.fwd.hh
KinematicAbinitio.hhpose / Pose.fwd.hh
KinematicAbinitio.hhkinematics / ShortestPathInFoldTree.fwd.hh
KinematicAbinitio.hhtypes.hh
KinematicControl.ccchemical / AtomType.hh
KinematicControl.cckinematics / MoveMap.hh
KinematicControl.ccpose / Pose.hh
KinematicControl.ccscoring / ScoreFunction.hh
KinematicControl.cckinematics / ShortestPathInFoldTree.hh
KinematicControl.ccpose / variant_util.hh
KinematicControl.ccchemical / VariantType.hh
KinematicControl.hhkinematics / FoldTree.hh
KinematicControl.hhkinematics / MoveMap.fwd.hh
KinematicControl.hhpose / Pose.fwd.hh
KinematicControl.hhscoring / ScoreFunction.fwd.hh
KinematicControl.hhkinematics / ShortestPathInFoldTree.fwd.hh
KinematicControl.hhtypes.hh
KinematicTaskControl.ccpose / Pose.hh
KinematicTaskControl.ccconformation / util.hh
KinematicTaskControl.cckinematics / util.hh
KinematicTaskControl.hhpose / Pose.fwd.hh
KinematicTaskControl.hhtypes.hh
LoopJumpFoldCst.ccfragment / FragSet.hh
LoopJumpFoldCst.cckinematics / MoveMap.hh
LoopJumpFoldCst.ccpose / Pose.hh
LoopJumpFoldCst.hhpose / Pose.fwd.hh
LoopJumpFoldCst.hhfragment / SecondaryStructure.hh
LoopJumpFoldCst.hhtypes.hh
MembraneAbinitio.ccpose / datacache / CacheableDataType.hh
MembraneAbinitio.ccfragment / FragSet.hh
MembraneAbinitio.ccscoring / MembranePotential.fwd.hh
MembraneAbinitio.ccscoring / MembranePotential.hh
MembraneAbinitio.ccscoring / MembraneTopology.hh
MembraneAbinitio.cckinematics / MoveMap.hh
MembraneAbinitio.ccpose / Pose.hh
MembraneAbinitio.ccio / silent / ProteinSilentStruct.hh
MembraneAbinitio.ccio / silent / ProteinSilentStruct.tmpl.hh
MembraneAbinitio.ccscoring / ScoreFunction.fwd.hh
MembraneAbinitio.ccscoring / ScoreFunctionFactory.hh
MembraneAbinitio.ccscoring / ScoreType.hh
MembraneAbinitio.ccio / silent / SilentFileData.hh
MembraneAbinitio.ccio / silent / SilentFileOptions.hh
MembraneAbinitio.cctypes.hh
MembraneAbinitio.hhfragment / FragSet.fwd.hh
MembraneAbinitio.hhscoring / MembranePotential.fwd.hh
MembraneAbinitio.hhscoring / MembraneTopology.fwd.hh
MembraneAbinitio.hhkinematics / MoveMap.fwd.hh
MembraneAbinitio.hhpose / Pose.fwd.hh
MembraneAbinitio.hhscoring / ScoreFunction.fwd.hh
MembraneAbinitio.hhscoring / ScoreType.hh
MembraneAbinitio.hhtypes.hh
PairingStatistics.ccfragment / FragSet.fwd.hh
PairingStatistics.ccid / SequenceMapping.hh
PairingStatistics.cctypes.hh
PairingStatistics.hhscoring / dssp / PairingsList.fwd.hh
PairingStatistics.hhpose / Pose.fwd.hh
PairingStatistics.hhscoring / dssp / StrandPairing.hh
PairingStatistics.hhtypes.hh
Protocol.ccio / silent / SilentFileData.hh
Protocol.ccio / silent / SilentFileOptions.hh
Protocol.ccio / silent / SilentStruct.hh
Protocol.ccio / silent / SilentStructFactory.hh
Protocol.hhscoring / ScoreFunction.hh
Protocol.hhio / silent / silent.fwd.hh
ResolutionSwitcher.ccoptimization / AtomTreeMinimizer.hh
ResolutionSwitcher.ccchemical / ChemicalManager.fwd.hh
ResolutionSwitcher.ccconformation / Conformation.hh
ResolutionSwitcher.ccscoring / constraints / ConstraintSet.hh
ResolutionSwitcher.ccoptimization / MinimizerOptions.hh
ResolutionSwitcher.cckinematics / MoveMap.hh
ResolutionSwitcher.ccpack / task / PackerTask.hh
ResolutionSwitcher.ccpose / Pose.hh
ResolutionSwitcher.ccscoring / ScoreFunction.hh
ResolutionSwitcher.ccscoring / ScoreFunctionFactory.hh
ResolutionSwitcher.ccid / SequenceMapping.hh
ResolutionSwitcher.ccutil / SwitchResidueTypeSet.hh
ResolutionSwitcher.ccpack / task / TaskFactory.hh
ResolutionSwitcher.ccpose / variant_util.hh
ResolutionSwitcher.ccchemical / VariantType.hh
ResolutionSwitcher.hhpose / Pose.hh
ResolutionSwitcher.hhscoring / ScoreFunction.hh
abscript / RigidChunkCM.cckinematics / AtomTree.hh
abscript / RigidChunkCM.ccchemical / ChemicalManager.hh
abscript / RigidChunkCM.ccenvironment / DofPassport.hh
abscript / RigidChunkCM.cckinematics / FoldTree.hh
abscript / RigidChunkCM.ccimport_pose / import_pose.hh
abscript / RigidChunkCM.cckinematics / MoveMap.hh
abscript / RigidChunkCM.ccpose / Pose.hh
abscript / RigidChunkCM.ccchemical / ResidueConnection.hh
abscript / RigidChunkCM.ccselect / residue_selector / ResidueIndexSelector.hh
abscript / RigidChunkCM.ccchemical / ResidueProperties.hh
abscript / RigidChunkCM.ccselect / residue_selector / TrueResidueSelector.hh
abscript / RigidChunkCM.ccselect / residue_selector / util.hh
abscript / RigidChunkCM.ccpose / util.hh
abscript / RigidChunkCM.hhselect / residue_selector / ResidueSelector.hh
abscript / StageID.hhtypes.hh
abscript / StagePreparer.ccenvironment / DofPassport.hh
abscript / StagePreparer.hhpose / Pose.hh
StrandConstraints.ccscoring / constraints / AmbiguousConstraint.hh
StrandConstraints.ccid / AtomID.hh
StrandConstraints.ccscoring / constraints / AtomPairConstraint.hh
StrandConstraints.ccscoring / constraints / BoundConstraint.hh
StrandConstraints.ccscoring / func / HarmonicFunc.hh
StrandConstraints.ccid / NamedAtomID.hh
StrandConstraints.cctypes.hh
StrandConstraints.ccpose / util.hh
StrandConstraints.hhscoring / constraints / Constraint.fwd.hh
StrandConstraints.hhscoring / dssp / PairingsList.fwd.hh
StrandConstraints.hhpose / Pose.fwd.hh
StrandConstraints.hhscoring / dssp / StrandPairing.hh
StrandConstraints.hhtypes.hh
abscript / StructPerturberCM.ccid / DOF_ID.hh
abscript / StructPerturberCM.ccenvironment / DofPassport.hh
abscript / StructPerturberCM.cckinematics / MoveMap.hh
abscript / StructPerturberCM.ccid / TorsionID.hh
Template.ccid / AtomID.hh
Template.ccscoring / constraints / AtomPairConstraint.hh
Template.ccscoring / constraints / ConstraintIO.hh
Template.ccscoring / constraints / ConstraintSet.hh
Template.ccsequence / DerivedSequenceMapping.hh
Template.ccfragment / FragData.hh
Template.ccfragment / FragSet.hh
Template.ccfragment / Frame.hh
Template.ccfragment / FrameList.hh
Template.ccscoring / func / HarmonicFunc.hh
Template.cckinematics / MoveMap.hh
Template.ccscoring / constraints / NamedAtomPairConstraint.hh
Template.ccscoring / dssp / PairingsList.hh
Template.ccpose / Pose.hh
Template.ccconformation / Residue.hh
Template.ccscoring / dssp / StrandPairing.hh
Template.cctypes.hh
Template.ccsequence / util.hh
Template.hhscoring / constraints / AtomPairConstraint.fwd.hh
Template.hhsequence / DerivedSequenceMapping.hh
Template.hhfragment / FragSet.fwd.hh
Template.hhfragment / FrameList.fwd.hh
Template.hhscoring / constraints / NamedAtomPairConstraint.fwd.hh
Template.hhscoring / dssp / PairingsList.fwd.hh
Template.hhpose / Pose.fwd.hh
Template.hhfragment / SingleResidueFragData.fwd.hh
Template.hhscoring / dssp / StrandPairing.fwd.hh
Template.hhtypes.hh
TemplateJumpSetup.ccfragment / FragSet.hh
TemplateJumpSetup.ccfragment / Frame.hh
TemplateJumpSetup.ccfragment / FrameList.hh
TemplateJumpSetup.cckinematics / MoveMap.hh
TemplateJumpSetup.ccfragment / OrderedFragSet.hh
TemplateJumpSetup.ccfragment / SecondaryStructure.hh
TemplateJumpSetup.cctypes.hh
TemplateJumpSetup.hhfragment / FragData.fwd.hh
TemplateJumpSetup.hhfragment / FragSet.fwd.hh
TemplateJumpSetup.hhfragment / FrameList.fwd.hh
TemplateJumpSetup.hhscoring / dssp / PairingsList.hh
TemplateJumpSetup.hhtypes.hh
Templates.ccid / AtomID.hh
Templates.ccscoring / constraints / AtomPairConstraint.hh
Templates.ccchemical / ChemicalManager.fwd.hh
Templates.ccfragment / ConstantLengthFragSet.hh
Templates.ccscoring / constraints / ConstraintSet.hh
Templates.ccpose / extra_pose_info_util.hh
Templates.ccfragment / FragData.hh
Templates.ccfragment / FragID_Iterator.hh
Templates.ccfragment / FragSet.hh
Templates.ccfragment / FrameIteratorWorker_.hh
Templates.ccimport_pose / import_pose.hh
Templates.ccscoring / constraints / NamedAtomPairConstraint.hh
Templates.ccpose / Pose.hh
Templates.ccfragment / SecondaryStructure.hh
Templates.ccfragment / SecstructSRFD.hh
Templates.ccid / SequenceMapping.hh
Templates.ccutil / SwitchResidueTypeSet.hh
Templates.cctypes.hh
Templates.ccpose / util.hh
Templates.hhscoring / constraints / ConstraintSet.fwd.hh
Templates.hhfragment / FragData.fwd.hh
Templates.hhfragment / FragSet.fwd.hh
Templates.hhscoring / dssp / PairingsList.fwd.hh
Templates.hhscoring / dssp / PairingsList.hh
Templates.hhpose / Pose.fwd.hh
Templates.hhfragment / SecondaryStructure.fwd.hh
Templates.hhfragment / SingleResidueFragData.fwd.hh
Templates.hhtypes.hh
util.ccscoring / constraints / BoundConstraint.hh
util.ccscoring / constraints / ConstraintIO.hh
util.ccscoring / func / FuncFactory.hh
util.ccio / silent / SilentStruct.hh
vs_test.ccchemical / ChemicalManager.hh
vs_test.cckinematics / MoveMap.hh
vs_test.ccpose / Pose.hh
vs_test.ccio / silent / ProteinSilentStruct.hh
vs_test.ccio / silent / ProteinSilentStruct.tmpl.hh
vs_test.ccscoring / ScoreFunction.fwd.hh
vs_test.ccscoring / ScoreFunction.hh
vs_test.ccscoring / ScoreFunctionFactory.hh
vs_test.ccsequence / Sequence.hh
vs_test.ccio / silent / SilentFileData.hh
vs_test.ccio / silent / SilentFileOptions.hh
vs_test.ccio / silent / SilentStruct.hh
vs_test.cctypes.hh
vs_test.ccsequence / util.hh