docking → core Relation

File in src/protocols/docking	Includes file in src/core
ConformerSwitchMover.cc	pose / datacache / CacheableDataType.hh
ConformerSwitchMover.cc	chemical / ChemicalManager.fwd.hh
ConformerSwitchMover.cc	pose / Pose.hh
ConformerSwitchMover.cc	scoring / rms_util.hh
ConformerSwitchMover.cc	scoring / ScoreFunction.hh
ConformerSwitchMover.cc	scoring / ScoreType.hh
ConformerSwitchMover.cc	types.hh
ConformerSwitchMover.cc	id / types.hh
ConformerSwitchMover.cc	pose / util.hh
ConformerSwitchMover.cc	pose / util.tmpl.hh
ConformerSwitchMover.hh	types.hh
DockFilters.cc	pose / Pose.fwd.hh
DockFilters.cc	scoring / ScoreFunction.hh
DockFilters.cc	scoring / ScoreFunctionFactory.hh
DockFilters.hh	pose / Pose.fwd.hh
DockFilters.hh	scoring / ScoreFunction.fwd.hh
DockFilters.hh	types.hh
DockingEnsemble.cc	pose / datacache / CacheableDataType.hh
DockingEnsemble.cc	chemical / ChemicalManager.fwd.hh
DockingEnsemble.cc	import_pose / import_pose.hh
DockingEnsemble.cc	kinematics / Jump.hh
DockingEnsemble.cc	pose / Pose.hh
DockingEnsemble.cc	scoring / ScoreFunction.hh
DockingEnsemble.cc	pack / task / TaskFactory.hh
DockingEnsemble.cc	pack / task / operation / TaskOperations.hh
DockingEnsemble.cc	types.hh
DockingEnsemble.hh	pose / Pose.hh
DockingEnsemble.hh	scoring / ScoreFunction.hh
DockingEnsemble.hh	types.hh
DockingEnsemblePrepackProtocol.cc	chemical / ChemicalManager.fwd.hh
DockingEnsemblePrepackProtocol.cc	kinematics / FoldTree.hh
DockingEnsemblePrepackProtocol.cc	import_pose / import_pose.hh
DockingEnsemblePrepackProtocol.cc	pose / PDBInfo.hh
DockingEnsemblePrepackProtocol.cc	pose / Pose.hh
DockingEnsemblePrepackProtocol.cc	scoring / ScoreFunction.hh
DockingEnsemblePrepackProtocol.cc	scoring / ScoreFunctionFactory.hh
DockingEnsemblePrepackProtocol.cc	pose / subpose_manipulation_util.hh
DockingEnsemblePrepackProtocol.cc	pack / task / TaskFactory.hh
DockingEnsemblePrepackProtocol.cc	pose / util.hh
DockingHighRes.cc	scoring / ScoreFunction.hh
DockingHighRes.cc	scoring / ScoreFunctionFactory.hh
DockingHighRes.cc	pack / task / TaskFactory.hh
DockingHighRes.hh	pose / Pose.fwd.hh
DockingHighRes.hh	scoring / ScoreFunction.fwd.hh
DockingHighRes.hh	pack / task / TaskFactory.fwd.hh
DockingHighRes.hh	pack / task / operation / TaskOperation.fwd.hh
DockingHighResLegacy.cc	kinematics / Jump.hh
DockingHighResLegacy.cc	kinematics / MoveMap.hh
DockingHighResLegacy.cc	pack / task / operation / NoRepackDisulfides.hh
DockingHighResLegacy.cc	pack / task / PackerTask.hh
DockingHighResLegacy.cc	pose / PDBInfo.hh
DockingHighResLegacy.cc	pose / Pose.hh
DockingHighResLegacy.cc	conformation / Residue.hh
DockingHighResLegacy.cc	pack / dunbrack / RotamerConstraint.hh
DockingHighResLegacy.cc	scoring / ScoreFunction.hh
DockingHighResLegacy.cc	pack / task / TaskFactory.hh
DockingHighResLegacy.cc	pack / task / operation / TaskOperations.hh
DockingHighResLegacy.cc	pack / rotamer_set / UnboundRotamersOperation.hh
DockingHighResLegacy.hh	kinematics / MoveMap.fwd.hh
DockingInitialPerturbation.cc	conformation / Conformation.hh
DockingInitialPerturbation.cc	scoring / Energies.hh
DockingInitialPerturbation.cc	kinematics / FoldTree.hh
DockingInitialPerturbation.cc	conformation / membrane / MembraneInfo.hh
DockingInitialPerturbation.cc	pose / Pose.hh
DockingInitialPerturbation.cc	energy_methods / RG_Energy_Fast.hh
DockingInitialPerturbation.cc	scoring / ScoreFunction.hh
DockingInitialPerturbation.cc	scoring / ScoreFunctionFactory.hh
DockingInitialPerturbation.cc	pose / selection.hh
DockingInitialPerturbation.cc	conformation / membrane / SpanningTopology.hh
DockingInitialPerturbation.cc	pose / subpose_manipulation_util.hh
DockingInitialPerturbation.cc	pose / util.hh
DockingInitialPerturbation.hh	pose / Pose.fwd.hh
DockingInitialPerturbation.hh	scoring / ScoreFunction.fwd.hh
DockingInitialPerturbation.hh	scoring / ScoreType.hh
DockingLowRes.cc	pose / datacache / CacheableDataType.hh
DockingLowRes.cc	kinematics / MoveMap.hh
DockingLowRes.cc	pose / Pose.hh
DockingLowRes.cc	scoring / ScoreFunction.hh
DockingLowRes.cc	scoring / ScoreFunctionFactory.hh
DockingLowRes.hh	kinematics / MoveMap.fwd.hh
DockingLowRes.hh	pose / Pose.fwd.hh
DockingLowRes.hh	scoring / ScoreFunction.fwd.hh
DockingLowResEnsemble.cc	kinematics / MoveMap.hh
DockingLowResEnsemble.cc	pose / Pose.hh
DockingLowResEnsemble.cc	scoring / ScoreFunctionFactory.hh
DockingLowResEnsemble.hh	kinematics / MoveMap.fwd.hh
DockingLowResEnsemble.hh	pose / Pose.fwd.hh
DockingLowResEnsemble.hh	scoring / ScoreFunction.fwd.hh
DockingPrepackProtocol.cc	conformation / Conformation.hh
DockingPrepackProtocol.cc	conformation / membrane / MembraneInfo.hh
DockingPrepackProtocol.cc	pose / PDBInfo.hh
DockingPrepackProtocol.cc	pose / Pose.hh
DockingPrepackProtocol.cc	scoring / ScoreFunction.hh
DockingPrepackProtocol.cc	scoring / ScoreFunctionFactory.hh
DockingPrepackProtocol.cc	pack / task / TaskFactory.hh
DockingPrepackProtocol.cc	types.hh
DockingPrepackProtocol.hh	pose / Pose.fwd.hh
DockingPrepackProtocol.hh	types.hh
DockingProtocol.cc	chemical / ChemicalManager.fwd.hh
DockingProtocol.cc	scoring / constraints / ConstraintSet.hh
DockingProtocol.cc	scoring / Energies.hh
DockingProtocol.cc	import_pose / import_pose.hh
DockingProtocol.cc	pack / task / operation / NoRepackDisulfides.hh
DockingProtocol.cc	pose / PDBInfo.hh
DockingProtocol.cc	pose / Pose.hh
DockingProtocol.cc	scoring / rms_util.tmpl.hh
DockingProtocol.cc	scoring / ScoreFunction.hh
DockingProtocol.cc	scoring / ScoreFunctionFactory.hh
DockingProtocol.cc	io / raw_data / ScoreMap.hh
DockingProtocol.cc	scoring / ScoreType.hh
DockingProtocol.cc	pack / task / TaskFactory.hh
DockingProtocol.cc	pack / task / operation / TaskOperations.hh
DockingProtocol.cc	types.hh
DockingProtocol.hh	kinematics / FoldTree.hh
DockingProtocol.hh	pose / Pose.fwd.hh
DockingProtocol.hh	scoring / ScoreFunction.hh
DockingProtocol.hh	pack / task / TaskFactory.hh
DockingProtocol.hh	pack / task / operation / TaskOperation.fwd.hh
DockingProtocol.hh	types.hh
DockMCMCycle.cc	kinematics / MoveMap.hh
DockMCMCycle.cc	pack / task / PackerTask.hh
DockMCMCycle.cc	pose / Pose.hh
DockMCMCycle.cc	scoring / ScoreFunction.hh
DockMCMCycle.cc	scoring / ScoreFunctionFactory.hh
DockMCMCycle.cc	pack / task / TaskFactory.hh
DockMCMCycle.hh	kinematics / MoveMap.fwd.hh
DockMCMCycle.hh	pose / Pose.fwd.hh
DockMCMCycle.hh	scoring / ScoreFunction.fwd.hh
DockMCMCycle.hh	pack / task / TaskFactory.fwd.hh
DockMCMProtocol.cc	kinematics / FoldTree.hh
DockMCMProtocol.cc	kinematics / MoveMap.hh
DockMCMProtocol.cc	pose / Pose.hh
DockMCMProtocol.cc	scoring / ScoreFunction.hh
DockMCMProtocol.cc	pack / task / TaskFactory.hh
DockMCMProtocol.hh	kinematics / MoveMap.fwd.hh
DockMCMProtocol.hh	pose / Pose.fwd.hh
DockMinMover.cc	kinematics / MoveMap.hh
DockMinMover.cc	pose / Pose.hh
DockMinMover.cc	scoring / ScoreFunction.hh
DockMinMover.hh	kinematics / MoveMap.fwd.hh
DockMinMover.hh	pose / Pose.fwd.hh
DockSetupMover.cc	pose / datacache / CacheableDataType.hh
DockSetupMover.cc	pose / Pose.hh
DockSetupMover.hh	kinematics / FoldTree.hh
DockSetupMover.hh	pose / Pose.fwd.hh
DockSetupMover.hh	scoring / ScoreFunction.hh
DockSetupMover.hh	types.hh
DockTaskFactory.cc	kinematics / FoldTree.hh
DockTaskFactory.cc	kinematics / Jump.hh
DockTaskFactory.cc	pack / task / operation / NoRepackDisulfides.hh
DockTaskFactory.cc	pose / PDBInfo.hh
DockTaskFactory.cc	pose / Pose.hh
DockTaskFactory.cc	conformation / Residue.hh
DockTaskFactory.cc	pack / task / TaskFactory.hh
DockTaskFactory.cc	pack / task / operation / TaskOperations.hh
DockTaskFactory.cc	pack / rotamer_set / UnboundRotamersOperation.hh
DockTaskFactory.hh	pose / Pose.fwd.hh
DockTaskFactory.hh	pack / task / operation / TaskOperation.fwd.hh
DockTaskFactory.hh	types.hh
EllipsoidalRandomizationMover.cc	conformation / Conformation.hh
EllipsoidalRandomizationMover.cc	kinematics / FoldTree.hh
EllipsoidalRandomizationMover.cc	kinematics / Jump.hh
EllipsoidalRandomizationMover.cc	kinematics / MoveMap.hh
EllipsoidalRandomizationMover.cc	pose / PDBInfo.hh
EllipsoidalRandomizationMover.cc	pose / Pose.hh
EllipsoidalRandomizationMover.cc	conformation / Residue.hh
EllipsoidalRandomizationMover.cc	kinematics / Stub.hh
EllipsoidalRandomizationMover.cc	types.hh
EllipsoidalRandomizationMover.hh	pose / Pose.hh
EllipsoidalRandomizationMover.hh	types.hh
metrics.cc	kinematics / FoldTree.hh
metrics.cc	pose / Pose.hh
metrics.cc	conformation / Residue.hh
metrics.cc	scoring / rms_util.tmpl.hh
metrics.cc	scoring / ScoreFunction.hh
metrics.cc	types.hh
metrics.hh	pose / Pose.fwd.hh
metrics.hh	conformation / Residue.fwd.hh
metrics.hh	scoring / ScoreFunction.fwd.hh
metrics.hh	types.hh
membrane / MPDockingMover.cc	conformation / Conformation.hh
membrane / MPDockingMover.cc	kinematics / FoldTree.hh
membrane / MPDockingMover.cc	import_pose / import_pose.hh
membrane / MPDockingMover.cc	conformation / membrane / MembraneInfo.hh
membrane / MPDockingMover.cc	pose / Pose.hh
membrane / MPDockingMover.cc	scoring / ScoreFunction.hh
membrane / MPDockingMover.cc	scoring / ScoreFunctionFactory.hh
membrane / MPDockingMover.cc	types.hh
membrane / MPDockingMover.hh	conformation / Conformation.fwd.hh
membrane / MPDockingMover.hh	conformation / membrane / MembraneInfo.fwd.hh
membrane / MPDockingMover.hh	pose / Pose.fwd.hh
membrane / MPDockingMover.hh	scoring / ScoreFunction.fwd.hh
membrane / MPDockingMover.hh	scoring / ScoreFunctionFactory.hh
membrane / MPDockingMover.hh	types.hh
membrane / MPDockingSetupMover.cc	pose / chains_util.hh
membrane / MPDockingSetupMover.cc	conformation / Conformation.hh
membrane / MPDockingSetupMover.cc	kinematics / FoldTree.hh
membrane / MPDockingSetupMover.cc	import_pose / import_pose.hh
membrane / MPDockingSetupMover.cc	conformation / membrane / MembraneInfo.hh
membrane / MPDockingSetupMover.cc	pose / PDBInfo.hh
membrane / MPDockingSetupMover.cc	pose / Pose.hh
membrane / MPDockingSetupMover.cc	conformation / membrane / SpanningTopology.hh
membrane / MPDockingSetupMover.cc	pose / subpose_manipulation_util.hh
membrane / MPDockingSetupMover.cc	types.hh
membrane / MPDockingSetupMover.cc	pose / util.hh
membrane / MPDockingSetupMover.cc	conformation / membrane / util.hh
membrane / MPDockingSetupMover.hh	conformation / Conformation.fwd.hh
membrane / MPDockingSetupMover.hh	conformation / membrane / MembraneInfo.fwd.hh
membrane / MPDockingSetupMover.hh	pose / Pose.hh
membrane / MPDockingSetupMover.hh	types.hh
membrane / MPFindInterfaceMover.cc	pose / chains_util.hh
membrane / MPFindInterfaceMover.cc	conformation / Conformation.hh
membrane / MPFindInterfaceMover.cc	scoring / Energies.hh
membrane / MPFindInterfaceMover.cc	scoring / EnergyMap.hh
membrane / MPFindInterfaceMover.cc	kinematics / FoldTree.hh
membrane / MPFindInterfaceMover.cc	import_pose / import_pose.hh
membrane / MPFindInterfaceMover.cc	conformation / membrane / MembraneInfo.hh
membrane / MPFindInterfaceMover.cc	pack / pack_rotamers.hh
membrane / MPFindInterfaceMover.cc	pose / PDBInfo.hh
membrane / MPFindInterfaceMover.cc	pose / Pose.hh
membrane / MPFindInterfaceMover.cc	scoring / rms_util.hh
membrane / MPFindInterfaceMover.cc	scoring / sasa / SasaCalc.hh
membrane / MPFindInterfaceMover.cc	scoring / ScoreFunction.hh
membrane / MPFindInterfaceMover.cc	scoring / ScoreFunctionFactory.hh
membrane / MPFindInterfaceMover.cc	scoring / ScoreType.hh
membrane / MPFindInterfaceMover.cc	scoring / sc / ShapeComplementarityCalculator.hh
membrane / MPFindInterfaceMover.cc	conformation / membrane / SpanningTopology.hh
membrane / MPFindInterfaceMover.cc	pack / task / TaskFactory.hh
membrane / MPFindInterfaceMover.cc	types.hh
membrane / MPFindInterfaceMover.cc	pose / util.hh
membrane / MPFindInterfaceMover.hh	kinematics / FoldTree.fwd.hh
membrane / MPFindInterfaceMover.hh	pose / Pose.fwd.hh
membrane / MPFindInterfaceMover.hh	pose / Pose.hh
membrane / MPFindInterfaceMover.hh	scoring / ScoreFunction.fwd.hh
membrane / MPFindInterfaceMover.hh	conformation / membrane / SpanningTopology.fwd.hh
membrane / MPFindInterfaceMover.hh	types.hh
membrane / QuickRelaxPartnersSeparately.cc	conformation / Conformation.hh
membrane / QuickRelaxPartnersSeparately.cc	scoring / Energies.hh
membrane / QuickRelaxPartnersSeparately.cc	kinematics / FoldTree.hh
membrane / QuickRelaxPartnersSeparately.cc	import_pose / import_pose.hh
membrane / QuickRelaxPartnersSeparately.cc	conformation / membrane / MembraneInfo.hh
membrane / QuickRelaxPartnersSeparately.cc	pose / PDBInfo.hh
membrane / QuickRelaxPartnersSeparately.cc	pose / Pose.hh
membrane / QuickRelaxPartnersSeparately.cc	scoring / ScoreFunction.hh
membrane / QuickRelaxPartnersSeparately.cc	scoring / ScoreFunctionFactory.hh
membrane / QuickRelaxPartnersSeparately.cc	conformation / membrane / SpanningTopology.hh
membrane / QuickRelaxPartnersSeparately.cc	types.hh
membrane / QuickRelaxPartnersSeparately.hh	pose / Pose.fwd.hh
membrane / QuickRelaxPartnersSeparately.hh	pose / Pose.hh
membrane / QuickRelaxPartnersSeparately.hh	scoring / ScoreFunction.fwd.hh
membrane / QuickRelaxPartnersSeparately.hh	conformation / membrane / SpanningTopology.fwd.hh
membrane / QuickRelaxPartnersSeparately.hh	types.hh
RigidBodyInfo.hh	types.hh
stateless / SaneDockingProtocol.cc	pose / Pose.fwd.hh
stateless / SaneDockingProtocol.cc	pose / Pose.hh
SidechainMinMover.cc	kinematics / FoldTree.hh
SidechainMinMover.cc	kinematics / MoveMap.hh
SidechainMinMover.cc	pack / task / PackerTask.hh
SidechainMinMover.cc	pose / Pose.hh
SidechainMinMover.cc	scoring / ScoreFunction.hh
SidechainMinMover.cc	scoring / ScoreFunctionFactory.hh
SidechainMinMover.cc	pack / task / TaskFactory.hh
SidechainMinMover.hh	kinematics / MoveMap.fwd.hh
SidechainMinMover.hh	pack / task / PackerTask.hh
TemperedDocking.cc	chemical / ChemicalManager.fwd.hh
TemperedDocking.cc	kinematics / FoldTree.hh
TemperedDocking.cc	kinematics / MoveMap.hh
TemperedDocking.cc	pose / Pose.hh
TemperedDocking.cc	scoring / ScoreFunction.hh
TemperedDocking.cc	scoring / ScoreFunctionFactory.hh
TemperedDocking.hh	kinematics / FoldTree.hh
TemperedDocking.hh	pose / Pose.fwd.hh
TemperedDocking.hh	scoring / ScoreFunction.hh
TemperedDocking.hh	types.hh
types.hh	types.hh
util.cc	select / residue_selector / ChainSelector.hh
util.cc	kinematics / Edge.hh
util.cc	kinematics / FoldTree.hh
util.cc	pose / Pose.hh
util.cc	types.hh
util.cc	pose / util.hh
util.hh	kinematics / FoldTree.hh
util.hh	pose / Pose.fwd.hh