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2021.07
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src
protocols
docking
docking → core Relation
File in src/protocols/docking
Includes file in src/core
ConformerSwitchMover.cc
pose
/
datacache
/
CacheableDataType.hh
ConformerSwitchMover.cc
chemical
/
ChemicalManager.fwd.hh
ConformerSwitchMover.cc
pose
/
Pose.hh
ConformerSwitchMover.cc
scoring
/
rms_util.hh
ConformerSwitchMover.cc
scoring
/
ScoreFunction.hh
ConformerSwitchMover.cc
scoring
/
ScoreType.hh
ConformerSwitchMover.cc
types.hh
ConformerSwitchMover.cc
id
/
types.hh
ConformerSwitchMover.cc
pose
/
util.hh
ConformerSwitchMover.cc
pose
/
util.tmpl.hh
ConformerSwitchMover.hh
types.hh
DockFilters.cc
pose
/
Pose.fwd.hh
DockFilters.cc
scoring
/
ScoreFunction.hh
DockFilters.cc
scoring
/
ScoreFunctionFactory.hh
DockFilters.hh
pose
/
Pose.fwd.hh
DockFilters.hh
scoring
/
ScoreFunction.fwd.hh
DockFilters.hh
types.hh
DockingEnsemble.cc
pose
/
datacache
/
CacheableDataType.hh
DockingEnsemble.cc
chemical
/
ChemicalManager.fwd.hh
DockingEnsemble.cc
import_pose
/
import_pose.hh
DockingEnsemble.cc
kinematics
/
Jump.hh
DockingEnsemble.cc
pose
/
Pose.hh
DockingEnsemble.cc
scoring
/
ScoreFunction.hh
DockingEnsemble.cc
pack
/
task
/
TaskFactory.hh
DockingEnsemble.cc
pack
/
task
/
operation
/
TaskOperations.hh
DockingEnsemble.cc
types.hh
DockingEnsemble.hh
pose
/
Pose.hh
DockingEnsemble.hh
scoring
/
ScoreFunction.hh
DockingEnsemble.hh
types.hh
DockingEnsemblePrepackProtocol.cc
chemical
/
ChemicalManager.fwd.hh
DockingEnsemblePrepackProtocol.cc
kinematics
/
FoldTree.hh
DockingEnsemblePrepackProtocol.cc
import_pose
/
import_pose.hh
DockingEnsemblePrepackProtocol.cc
pose
/
PDBInfo.hh
DockingEnsemblePrepackProtocol.cc
pose
/
Pose.hh
DockingEnsemblePrepackProtocol.cc
scoring
/
ScoreFunction.hh
DockingEnsemblePrepackProtocol.cc
scoring
/
ScoreFunctionFactory.hh
DockingEnsemblePrepackProtocol.cc
pose
/
subpose_manipulation_util.hh
DockingEnsemblePrepackProtocol.cc
pack
/
task
/
TaskFactory.hh
DockingEnsemblePrepackProtocol.cc
pose
/
util.hh
DockingHighRes.cc
scoring
/
ScoreFunction.hh
DockingHighRes.cc
scoring
/
ScoreFunctionFactory.hh
DockingHighRes.cc
pack
/
task
/
TaskFactory.hh
DockingHighRes.hh
pose
/
Pose.fwd.hh
DockingHighRes.hh
scoring
/
ScoreFunction.fwd.hh
DockingHighRes.hh
pack
/
task
/
TaskFactory.fwd.hh
DockingHighRes.hh
pack
/
task
/
operation
/
TaskOperation.fwd.hh
DockingHighResLegacy.cc
kinematics
/
Jump.hh
DockingHighResLegacy.cc
kinematics
/
MoveMap.hh
DockingHighResLegacy.cc
pack
/
task
/
operation
/
NoRepackDisulfides.hh
DockingHighResLegacy.cc
pack
/
task
/
PackerTask.hh
DockingHighResLegacy.cc
pose
/
PDBInfo.hh
DockingHighResLegacy.cc
pose
/
Pose.hh
DockingHighResLegacy.cc
conformation
/
Residue.hh
DockingHighResLegacy.cc
pack
/
dunbrack
/
RotamerConstraint.hh
DockingHighResLegacy.cc
scoring
/
ScoreFunction.hh
DockingHighResLegacy.cc
pack
/
task
/
TaskFactory.hh
DockingHighResLegacy.cc
pack
/
task
/
operation
/
TaskOperations.hh
DockingHighResLegacy.cc
pack
/
rotamer_set
/
UnboundRotamersOperation.hh
DockingHighResLegacy.hh
kinematics
/
MoveMap.fwd.hh
DockingInitialPerturbation.cc
conformation
/
Conformation.hh
DockingInitialPerturbation.cc
scoring
/
Energies.hh
DockingInitialPerturbation.cc
kinematics
/
FoldTree.hh
DockingInitialPerturbation.cc
conformation
/
membrane
/
MembraneInfo.hh
DockingInitialPerturbation.cc
pose
/
Pose.hh
DockingInitialPerturbation.cc
energy_methods
/
RG_Energy_Fast.hh
DockingInitialPerturbation.cc
scoring
/
ScoreFunction.hh
DockingInitialPerturbation.cc
scoring
/
ScoreFunctionFactory.hh
DockingInitialPerturbation.cc
pose
/
selection.hh
DockingInitialPerturbation.cc
conformation
/
membrane
/
SpanningTopology.hh
DockingInitialPerturbation.cc
pose
/
subpose_manipulation_util.hh
DockingInitialPerturbation.cc
pose
/
util.hh
DockingInitialPerturbation.hh
pose
/
Pose.fwd.hh
DockingInitialPerturbation.hh
scoring
/
ScoreFunction.fwd.hh
DockingInitialPerturbation.hh
scoring
/
ScoreType.hh
DockingLowRes.cc
pose
/
datacache
/
CacheableDataType.hh
DockingLowRes.cc
kinematics
/
MoveMap.hh
DockingLowRes.cc
pose
/
Pose.hh
DockingLowRes.cc
scoring
/
ScoreFunction.hh
DockingLowRes.cc
scoring
/
ScoreFunctionFactory.hh
DockingLowRes.hh
kinematics
/
MoveMap.fwd.hh
DockingLowRes.hh
pose
/
Pose.fwd.hh
DockingLowRes.hh
scoring
/
ScoreFunction.fwd.hh
DockingLowResEnsemble.cc
kinematics
/
MoveMap.hh
DockingLowResEnsemble.cc
pose
/
Pose.hh
DockingLowResEnsemble.cc
scoring
/
ScoreFunctionFactory.hh
DockingLowResEnsemble.hh
kinematics
/
MoveMap.fwd.hh
DockingLowResEnsemble.hh
pose
/
Pose.fwd.hh
DockingLowResEnsemble.hh
scoring
/
ScoreFunction.fwd.hh
DockingPrepackProtocol.cc
conformation
/
Conformation.hh
DockingPrepackProtocol.cc
conformation
/
membrane
/
MembraneInfo.hh
DockingPrepackProtocol.cc
pose
/
PDBInfo.hh
DockingPrepackProtocol.cc
pose
/
Pose.hh
DockingPrepackProtocol.cc
scoring
/
ScoreFunction.hh
DockingPrepackProtocol.cc
scoring
/
ScoreFunctionFactory.hh
DockingPrepackProtocol.cc
pack
/
task
/
TaskFactory.hh
DockingPrepackProtocol.cc
types.hh
DockingPrepackProtocol.hh
pose
/
Pose.fwd.hh
DockingPrepackProtocol.hh
types.hh
DockingProtocol.cc
chemical
/
ChemicalManager.fwd.hh
DockingProtocol.cc
scoring
/
constraints
/
ConstraintSet.hh
DockingProtocol.cc
scoring
/
Energies.hh
DockingProtocol.cc
import_pose
/
import_pose.hh
DockingProtocol.cc
pack
/
task
/
operation
/
NoRepackDisulfides.hh
DockingProtocol.cc
pose
/
PDBInfo.hh
DockingProtocol.cc
pose
/
Pose.hh
DockingProtocol.cc
scoring
/
rms_util.tmpl.hh
DockingProtocol.cc
scoring
/
ScoreFunction.hh
DockingProtocol.cc
scoring
/
ScoreFunctionFactory.hh
DockingProtocol.cc
io
/
raw_data
/
ScoreMap.hh
DockingProtocol.cc
scoring
/
ScoreType.hh
DockingProtocol.cc
pack
/
task
/
TaskFactory.hh
DockingProtocol.cc
pack
/
task
/
operation
/
TaskOperations.hh
DockingProtocol.cc
types.hh
DockingProtocol.hh
kinematics
/
FoldTree.hh
DockingProtocol.hh
pose
/
Pose.fwd.hh
DockingProtocol.hh
scoring
/
ScoreFunction.hh
DockingProtocol.hh
pack
/
task
/
TaskFactory.hh
DockingProtocol.hh
pack
/
task
/
operation
/
TaskOperation.fwd.hh
DockingProtocol.hh
types.hh
DockMCMCycle.cc
kinematics
/
MoveMap.hh
DockMCMCycle.cc
pack
/
task
/
PackerTask.hh
DockMCMCycle.cc
pose
/
Pose.hh
DockMCMCycle.cc
scoring
/
ScoreFunction.hh
DockMCMCycle.cc
scoring
/
ScoreFunctionFactory.hh
DockMCMCycle.cc
pack
/
task
/
TaskFactory.hh
DockMCMCycle.hh
kinematics
/
MoveMap.fwd.hh
DockMCMCycle.hh
pose
/
Pose.fwd.hh
DockMCMCycle.hh
scoring
/
ScoreFunction.fwd.hh
DockMCMCycle.hh
pack
/
task
/
TaskFactory.fwd.hh
DockMCMProtocol.cc
kinematics
/
FoldTree.hh
DockMCMProtocol.cc
kinematics
/
MoveMap.hh
DockMCMProtocol.cc
pose
/
Pose.hh
DockMCMProtocol.cc
scoring
/
ScoreFunction.hh
DockMCMProtocol.cc
pack
/
task
/
TaskFactory.hh
DockMCMProtocol.hh
kinematics
/
MoveMap.fwd.hh
DockMCMProtocol.hh
pose
/
Pose.fwd.hh
DockMinMover.cc
kinematics
/
MoveMap.hh
DockMinMover.cc
pose
/
Pose.hh
DockMinMover.cc
scoring
/
ScoreFunction.hh
DockMinMover.hh
kinematics
/
MoveMap.fwd.hh
DockMinMover.hh
pose
/
Pose.fwd.hh
DockSetupMover.cc
pose
/
datacache
/
CacheableDataType.hh
DockSetupMover.cc
pose
/
Pose.hh
DockSetupMover.hh
kinematics
/
FoldTree.hh
DockSetupMover.hh
pose
/
Pose.fwd.hh
DockSetupMover.hh
scoring
/
ScoreFunction.hh
DockSetupMover.hh
types.hh
DockTaskFactory.cc
kinematics
/
FoldTree.hh
DockTaskFactory.cc
kinematics
/
Jump.hh
DockTaskFactory.cc
pack
/
task
/
operation
/
NoRepackDisulfides.hh
DockTaskFactory.cc
pose
/
PDBInfo.hh
DockTaskFactory.cc
pose
/
Pose.hh
DockTaskFactory.cc
conformation
/
Residue.hh
DockTaskFactory.cc
pack
/
task
/
TaskFactory.hh
DockTaskFactory.cc
pack
/
task
/
operation
/
TaskOperations.hh
DockTaskFactory.cc
pack
/
rotamer_set
/
UnboundRotamersOperation.hh
DockTaskFactory.hh
pose
/
Pose.fwd.hh
DockTaskFactory.hh
pack
/
task
/
operation
/
TaskOperation.fwd.hh
DockTaskFactory.hh
types.hh
EllipsoidalRandomizationMover.cc
conformation
/
Conformation.hh
EllipsoidalRandomizationMover.cc
kinematics
/
FoldTree.hh
EllipsoidalRandomizationMover.cc
kinematics
/
Jump.hh
EllipsoidalRandomizationMover.cc
kinematics
/
MoveMap.hh
EllipsoidalRandomizationMover.cc
pose
/
PDBInfo.hh
EllipsoidalRandomizationMover.cc
pose
/
Pose.hh
EllipsoidalRandomizationMover.cc
conformation
/
Residue.hh
EllipsoidalRandomizationMover.cc
kinematics
/
Stub.hh
EllipsoidalRandomizationMover.cc
types.hh
EllipsoidalRandomizationMover.hh
pose
/
Pose.hh
EllipsoidalRandomizationMover.hh
types.hh
metrics.cc
kinematics
/
FoldTree.hh
metrics.cc
pose
/
Pose.hh
metrics.cc
conformation
/
Residue.hh
metrics.cc
scoring
/
rms_util.tmpl.hh
metrics.cc
scoring
/
ScoreFunction.hh
metrics.cc
types.hh
metrics.hh
pose
/
Pose.fwd.hh
metrics.hh
conformation
/
Residue.fwd.hh
metrics.hh
scoring
/
ScoreFunction.fwd.hh
metrics.hh
types.hh
membrane
/
MPDockingMover.cc
conformation
/
Conformation.hh
membrane
/
MPDockingMover.cc
kinematics
/
FoldTree.hh
membrane
/
MPDockingMover.cc
import_pose
/
import_pose.hh
membrane
/
MPDockingMover.cc
conformation
/
membrane
/
MembraneInfo.hh
membrane
/
MPDockingMover.cc
pose
/
Pose.hh
membrane
/
MPDockingMover.cc
scoring
/
ScoreFunction.hh
membrane
/
MPDockingMover.cc
scoring
/
ScoreFunctionFactory.hh
membrane
/
MPDockingMover.cc
types.hh
membrane
/
MPDockingMover.hh
conformation
/
Conformation.fwd.hh
membrane
/
MPDockingMover.hh
conformation
/
membrane
/
MembraneInfo.fwd.hh
membrane
/
MPDockingMover.hh
pose
/
Pose.fwd.hh
membrane
/
MPDockingMover.hh
scoring
/
ScoreFunction.fwd.hh
membrane
/
MPDockingMover.hh
scoring
/
ScoreFunctionFactory.hh
membrane
/
MPDockingMover.hh
types.hh
membrane
/
MPDockingSetupMover.cc
pose
/
chains_util.hh
membrane
/
MPDockingSetupMover.cc
conformation
/
Conformation.hh
membrane
/
MPDockingSetupMover.cc
kinematics
/
FoldTree.hh
membrane
/
MPDockingSetupMover.cc
import_pose
/
import_pose.hh
membrane
/
MPDockingSetupMover.cc
conformation
/
membrane
/
MembraneInfo.hh
membrane
/
MPDockingSetupMover.cc
pose
/
PDBInfo.hh
membrane
/
MPDockingSetupMover.cc
pose
/
Pose.hh
membrane
/
MPDockingSetupMover.cc
conformation
/
membrane
/
SpanningTopology.hh
membrane
/
MPDockingSetupMover.cc
pose
/
subpose_manipulation_util.hh
membrane
/
MPDockingSetupMover.cc
types.hh
membrane
/
MPDockingSetupMover.cc
pose
/
util.hh
membrane
/
MPDockingSetupMover.cc
conformation
/
membrane
/
util.hh
membrane
/
MPDockingSetupMover.hh
conformation
/
Conformation.fwd.hh
membrane
/
MPDockingSetupMover.hh
conformation
/
membrane
/
MembraneInfo.fwd.hh
membrane
/
MPDockingSetupMover.hh
pose
/
Pose.hh
membrane
/
MPDockingSetupMover.hh
types.hh
membrane
/
MPFindInterfaceMover.cc
pose
/
chains_util.hh
membrane
/
MPFindInterfaceMover.cc
conformation
/
Conformation.hh
membrane
/
MPFindInterfaceMover.cc
scoring
/
Energies.hh
membrane
/
MPFindInterfaceMover.cc
scoring
/
EnergyMap.hh
membrane
/
MPFindInterfaceMover.cc
kinematics
/
FoldTree.hh
membrane
/
MPFindInterfaceMover.cc
import_pose
/
import_pose.hh
membrane
/
MPFindInterfaceMover.cc
conformation
/
membrane
/
MembraneInfo.hh
membrane
/
MPFindInterfaceMover.cc
pack
/
pack_rotamers.hh
membrane
/
MPFindInterfaceMover.cc
pose
/
PDBInfo.hh
membrane
/
MPFindInterfaceMover.cc
pose
/
Pose.hh
membrane
/
MPFindInterfaceMover.cc
scoring
/
rms_util.hh
membrane
/
MPFindInterfaceMover.cc
scoring
/
sasa
/
SasaCalc.hh
membrane
/
MPFindInterfaceMover.cc
scoring
/
ScoreFunction.hh
membrane
/
MPFindInterfaceMover.cc
scoring
/
ScoreFunctionFactory.hh
membrane
/
MPFindInterfaceMover.cc
scoring
/
ScoreType.hh
membrane
/
MPFindInterfaceMover.cc
scoring
/
sc
/
ShapeComplementarityCalculator.hh
membrane
/
MPFindInterfaceMover.cc
conformation
/
membrane
/
SpanningTopology.hh
membrane
/
MPFindInterfaceMover.cc
pack
/
task
/
TaskFactory.hh
membrane
/
MPFindInterfaceMover.cc
types.hh
membrane
/
MPFindInterfaceMover.cc
pose
/
util.hh
membrane
/
MPFindInterfaceMover.hh
kinematics
/
FoldTree.fwd.hh
membrane
/
MPFindInterfaceMover.hh
pose
/
Pose.fwd.hh
membrane
/
MPFindInterfaceMover.hh
pose
/
Pose.hh
membrane
/
MPFindInterfaceMover.hh
scoring
/
ScoreFunction.fwd.hh
membrane
/
MPFindInterfaceMover.hh
conformation
/
membrane
/
SpanningTopology.fwd.hh
membrane
/
MPFindInterfaceMover.hh
types.hh
membrane
/
QuickRelaxPartnersSeparately.cc
conformation
/
Conformation.hh
membrane
/
QuickRelaxPartnersSeparately.cc
scoring
/
Energies.hh
membrane
/
QuickRelaxPartnersSeparately.cc
kinematics
/
FoldTree.hh
membrane
/
QuickRelaxPartnersSeparately.cc
import_pose
/
import_pose.hh
membrane
/
QuickRelaxPartnersSeparately.cc
conformation
/
membrane
/
MembraneInfo.hh
membrane
/
QuickRelaxPartnersSeparately.cc
pose
/
PDBInfo.hh
membrane
/
QuickRelaxPartnersSeparately.cc
pose
/
Pose.hh
membrane
/
QuickRelaxPartnersSeparately.cc
scoring
/
ScoreFunction.hh
membrane
/
QuickRelaxPartnersSeparately.cc
scoring
/
ScoreFunctionFactory.hh
membrane
/
QuickRelaxPartnersSeparately.cc
conformation
/
membrane
/
SpanningTopology.hh
membrane
/
QuickRelaxPartnersSeparately.cc
types.hh
membrane
/
QuickRelaxPartnersSeparately.hh
pose
/
Pose.fwd.hh
membrane
/
QuickRelaxPartnersSeparately.hh
pose
/
Pose.hh
membrane
/
QuickRelaxPartnersSeparately.hh
scoring
/
ScoreFunction.fwd.hh
membrane
/
QuickRelaxPartnersSeparately.hh
conformation
/
membrane
/
SpanningTopology.fwd.hh
membrane
/
QuickRelaxPartnersSeparately.hh
types.hh
RigidBodyInfo.hh
types.hh
stateless
/
SaneDockingProtocol.cc
pose
/
Pose.fwd.hh
stateless
/
SaneDockingProtocol.cc
pose
/
Pose.hh
SidechainMinMover.cc
kinematics
/
FoldTree.hh
SidechainMinMover.cc
kinematics
/
MoveMap.hh
SidechainMinMover.cc
pack
/
task
/
PackerTask.hh
SidechainMinMover.cc
pose
/
Pose.hh
SidechainMinMover.cc
scoring
/
ScoreFunction.hh
SidechainMinMover.cc
scoring
/
ScoreFunctionFactory.hh
SidechainMinMover.cc
pack
/
task
/
TaskFactory.hh
SidechainMinMover.hh
kinematics
/
MoveMap.fwd.hh
SidechainMinMover.hh
pack
/
task
/
PackerTask.hh
TemperedDocking.cc
chemical
/
ChemicalManager.fwd.hh
TemperedDocking.cc
kinematics
/
FoldTree.hh
TemperedDocking.cc
kinematics
/
MoveMap.hh
TemperedDocking.cc
pose
/
Pose.hh
TemperedDocking.cc
scoring
/
ScoreFunction.hh
TemperedDocking.cc
scoring
/
ScoreFunctionFactory.hh
TemperedDocking.hh
kinematics
/
FoldTree.hh
TemperedDocking.hh
pose
/
Pose.fwd.hh
TemperedDocking.hh
scoring
/
ScoreFunction.hh
TemperedDocking.hh
types.hh
types.hh
types.hh
util.cc
select
/
residue_selector
/
ChainSelector.hh
util.cc
kinematics
/
Edge.hh
util.cc
kinematics
/
FoldTree.hh
util.cc
pose
/
Pose.hh
util.cc
types.hh
util.cc
pose
/
util.hh
util.hh
kinematics
/
FoldTree.hh
util.hh
pose
/
Pose.fwd.hh
Generated on Thu Mar 4 2021 07:38:03 for Rosetta by
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