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fldsgn → core Relation

File in src/protocols/fldsgnIncludes file in src/core
potentials / AACompositionEnergy.ccscoring / EnergyMap.hh
potentials / AACompositionEnergy.ccscoring / methods / EnergyMethod.hh
potentials / AACompositionEnergy.ccpose / Pose.hh
potentials / AACompositionEnergy.ccconformation / Residue.hh
potentials / AACompositionEnergy.ccscoring / ScoreType.hh
potentials / AACompositionEnergy.hhchemical / AA.hh
potentials / AACompositionEnergy.hhscoring / methods / ContextDependentOneBodyEnergy.hh
potentials / AACompositionEnergy.hhid / DOF_ID.fwd.hh
potentials / AACompositionEnergy.hhscoring / EnergyMap.fwd.hh
potentials / AACompositionEnergy.hhscoring / methods / EnergyMethod.fwd.hh
potentials / AACompositionEnergy.hhpose / Pose.fwd.hh
potentials / AACompositionEnergy.hhscoring / ScoreFunction.fwd.hh
potentials / AACompositionEnergy.hhscoring / ScoreType.hh
potentials / AACompositionEnergy.hhid / TorsionID.fwd.hh
potentials / AACompositionEnergy.hhtypes.hh
potentials / AACompositionEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
potentials / AACompositionEnergyCreator.hhscoring / methods / EnergyMethodOptions.fwd.hh
potentials / AACompositionEnergyCreator.hhscoring / ScoreType.hh
topology / BB_Pos.ccpose / Pose.hh
topology / BB_Pos.ccconformation / Residue.hh
topology / BB_Pos.hhpose / Pose.fwd.hh
topology / BB_Pos.hhchemical / ResidueType.fwd.hh
topology / BB_Pos.hhtypes.hh
topology / BetaAlphaBetaMotif.cctypes.hh
topology / BetaAlphaBetaMotif.hhtypes.hh
BluePrintBDR.ccchemical / AA.hh
BluePrintBDR.ccscoring / constraints / Constraint.hh
BluePrintBDR.ccscoring / constraints / ConstraintSet.hh
BluePrintBDR.ccscoring / dssp / Dssp.hh
BluePrintBDR.ccscoring / Energies.hh
BluePrintBDR.cckinematics / FoldTree.hh
BluePrintBDR.ccimport_pose / import_pose.hh
BluePrintBDR.ccpose / PDBInfo.hh
BluePrintBDR.ccpose / Pose.hh
BluePrintBDR.ccchemical / ResidueTypeSet.hh
BluePrintBDR.ccscoring / ScoreFunction.hh
BluePrintBDR.ccscoring / ScoreFunctionFactory.hh
BluePrintBDR.ccutil / SwitchResidueTypeSet.hh
BluePrintBDR.ccpose / symmetry / util.hh
BluePrintBDR.hhscoring / dssp / Dssp.fwd.hh
BluePrintBDR.hhpose / Pose.fwd.hh
BluePrintBDR.hhscoring / ScoreFunction.fwd.hh
BluePrintBDR.hhtypes.hh
CircularPermutation.ccconformation / Conformation.hh
CircularPermutation.cckinematics / FoldTree.hh
CircularPermutation.cckinematics / MoveMap.hh
CircularPermutation.ccpose / Pose.hh
CircularPermutation.ccconformation / Residue.hh
CircularPermutation.ccconformation / ResidueFactory.hh
CircularPermutation.ccchemical / ResidueTypeSet.hh
CircularPermutation.ccpose / symmetry / util.hh
CircularPermutation.ccpose / variant_util.hh
CircularPermutation.hhkinematics / MoveMap.fwd.hh
CircularPermutation.hhpose / Pose.fwd.hh
CircularPermutation.hhtypes.hh
filters / CoreDunbrackFilter.ccchemical / AA.hh
filters / CoreDunbrackFilter.ccid / AtomID_Map.hh
filters / CoreDunbrackFilter.ccscoring / Energies.hh
filters / CoreDunbrackFilter.ccpose / Pose.hh
filters / CoreDunbrackFilter.ccconformation / Residue.hh
filters / CoreDunbrackFilter.ccscoring / sasa.hh
filters / CoreDunbrackFilter.ccscoring / ScoreFunction.hh
filters / CoreDunbrackFilter.ccscoring / ScoreFunctionFactory.hh
filters / CoreDunbrackFilter.ccscoring / ScoreType.hh
filters / CoreDunbrackFilter.cctypes.hh
filters / CoreDunbrackFilter.ccpose / util.hh
filters / CoreDunbrackFilter.ccpose / util.tmpl.hh
filters / CoreDunbrackFilter.hhpose / Pose.fwd.hh
filters / CoreDunbrackFilter.hhscoring / ScoreFunction.fwd.hh
topology / DimerPairing.hhtypes.hh
filters / FragQualFilter.ccpose / metrics / CalculatorFactory.hh
filters / FragQualFilter.ccpose / Pose.hh
filters / FragQualFilter.cctypes.hh
filters / FragQualFilter.hhpose / Pose.fwd.hh
filters / HelixBendFilter.ccscoring / dssp / Dssp.hh
filters / HelixBendFilter.ccpose / Pose.hh
filters / HelixBendFilter.ccconformation / Residue.hh
filters / HelixBendFilter.ccpose / selection.hh
filters / HelixBendFilter.cctypes.hh
filters / HelixBendFilter.ccpose / util.hh
filters / HelixBendFilter.hhpose / Pose.fwd.hh
filters / HelixKinkFilter.ccscoring / Energies.hh
filters / HelixKinkFilter.ccscoring / EnergiesCacheableDataType.hh
filters / HelixKinkFilter.ccpose / Pose.hh
filters / HelixKinkFilter.ccconformation / Residue.hh
filters / HelixKinkFilter.ccpose / selection.hh
filters / HelixKinkFilter.cctypes.hh
filters / HelixKinkFilter.hhpose / Pose.fwd.hh
topology / HelixPairing.hhtypes.hh
filters / HelixPairingFilter.ccscoring / dssp / Dssp.hh
filters / HelixPairingFilter.ccpose / Pose.hh
filters / HelixPairingFilter.cctypes.hh
filters / HelixPairingFilter.hhpose / Pose.fwd.hh
potentials / sspot / HSPairPotential.ccscoring / Energies.hh
potentials / sspot / HSPairPotential.ccscoring / EnergyGraph.hh
potentials / sspot / HSPairPotential.cckinematics / Jump.hh
potentials / sspot / HSPairPotential.ccpose / Pose.hh
potentials / sspot / HSPairPotential.ccconformation / Residue.hh
potentials / sspot / HSPairPotential.hhscoring / EnergyGraph.fwd.hh
potentials / sspot / HSPairPotential.hhpose / Pose.fwd.hh
potentials / sspot / HSPairPotential.hhtypes.hh
topology / HSSTriplet.hhtypes.hh
filters / HSSTripletFilter.ccscoring / dssp / Dssp.hh
filters / HSSTripletFilter.ccpose / Pose.hh
filters / HSSTripletFilter.cctypes.hh
filters / HSSTripletFilter.hhpose / Pose.fwd.hh
filters / InterlockingAromaFilter.ccchemical / AA.hh
filters / InterlockingAromaFilter.ccchemical / AtomType.hh
filters / InterlockingAromaFilter.ccscoring / dssp / Dssp.hh
filters / InterlockingAromaFilter.ccscoring / Energies.hh
filters / InterlockingAromaFilter.cckinematics / Jump.hh
filters / InterlockingAromaFilter.ccpose / Pose.hh
filters / InterlockingAromaFilter.ccconformation / Residue.hh
filters / InterlockingAromaFilter.ccscoring / TenANeighborGraph.hh
filters / InterlockingAromaFilter.hhpose / Pose.fwd.hh
filters / InterlockingAromaFilter.hhtypes.hh
MatchResidues.ccid / AtomID_Map.hh
MatchResidues.ccimport_pose / import_pose.hh
MatchResidues.ccpose / Pose.hh
MatchResidues.ccchemical / ResidueType.hh
MatchResidues.ccscoring / rms_util.hh
MatchResidues.cctypes.hh
MatchResidues.ccpose / util.hh
MatchResidues.hhpose / Pose.hh
MatchResidues.hhpack / task / TaskFactory.fwd.hh
MatchResidues.hhpack / task / operation / TaskOperation.fwd.hh
MatchResiduesMover.ccimport_pose / import_pose.hh
MatchResiduesMover.ccpose / Pose.hh
MatchResiduesMover.ccchemical / ResidueType.hh
MatchResiduesMover.ccscoring / rms_util.hh
MatchResiduesMover.cctypes.hh
MatchResiduesMover.hhpose / Pose.hh
MatchResiduesMover.hhpack / task / TaskFactory.fwd.hh
MatchResiduesMover.hhpack / task / operation / TaskOperation.fwd.hh
potentials / sspot / NatbiasHelicesSheetPotential.hhtypes.hh
potentials / sspot / NatbiasHelixPairPotential.hhpose / Pose.fwd.hh
potentials / sspot / NatbiasHelixPairPotential.hhtypes.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.ccscoring / EnergyMap.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.ccscoring / methods / EnergyMethod.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.ccpose / Pose.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.ccconformation / Residue.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.ccscoring / ScoreType.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hhscoring / EnergyMap.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hhscoring / methods / EnergyMethod.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hhpose / Pose.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hhscoring / ScoreFunction.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hhscoring / methods / WholeStructureEnergy.hh
potentials / sspot / NatbiasSecondaryStructureEnergyCreator.hhscoring / methods / EnergyMethodCreator.hh
potentials / sspot / NatbiasSecondaryStructureEnergyCreator.hhscoring / methods / EnergyMethodOptions.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergyCreator.hhscoring / ScoreType.hh
potentials / sspot / NatbiasStrandPairPotential.ccscoring / Energies.hh
potentials / sspot / NatbiasStrandPairPotential.ccscoring / EnergyGraph.hh
potentials / sspot / NatbiasStrandPairPotential.cckinematics / Jump.hh
potentials / sspot / NatbiasStrandPairPotential.ccpose / Pose.hh
potentials / sspot / NatbiasStrandPairPotential.ccconformation / Residue.hh
potentials / sspot / NatbiasStrandPairPotential.ccscoring / SecondaryStructurePotential.hh
potentials / sspot / NatbiasStrandPairPotential.ccscoring / symmetry / SymmetricEnergies.fwd.hh
potentials / sspot / NatbiasStrandPairPotential.ccpose / symmetry / util.hh
potentials / sspot / NatbiasStrandPairPotential.hhpose / Pose.fwd.hh
potentials / sspot / NatbiasStrandPairPotential.hhtypes.hh
NcontactsCalculator.ccconformation / Atom.hh
NcontactsCalculator.ccchemical / AtomType.hh
NcontactsCalculator.ccpose / Pose.hh
NcontactsCalculator.ccconformation / Residue.hh
NcontactsCalculator.hhconformation / Atom.fwd.hh
NcontactsCalculator.hhpose / Pose.fwd.hh
NcontactsCalculator.hhpose / metrics / PoseMetricCalculatorBase.hh
NcontactsCalculator.hhconformation / Residue.fwd.hh
NcontactsCalculator.hhtypes.hh
filters / NcontactsFilter.hhpose / Pose.fwd.hh
filters / NcontactsFilter.hhtypes.hh
filters / ParallelBetaPairingPreferenceFilter.ccscoring / dssp / Dssp.hh
filters / ParallelBetaPairingPreferenceFilter.ccpose / Pose.hh
filters / ParallelBetaPairingPreferenceFilter.cctypes.hh
filters / ParallelBetaPairingPreferenceFilter.hhchemical / AA.hh
filters / ParallelBetaPairingPreferenceFilter.hhpose / Pose.fwd.hh
filters / SecondaryStructureCountFilter.ccscoring / dssp / Dssp.hh
filters / SecondaryStructureCountFilter.ccpose / Pose.hh
filters / SecondaryStructureCountFilter.ccconformation / Residue.hh
filters / SecondaryStructureCountFilter.ccselect / residue_selector / ResidueSelector.hh
filters / SecondaryStructureCountFilter.ccselect / residue_selector / TrueResidueSelector.hh
filters / SecondaryStructureCountFilter.cctypes.hh
filters / SecondaryStructureCountFilter.ccselect / residue_selector / util.hh
filters / SecondaryStructureCountFilter.hhpose / Pose.fwd.hh
filters / SecondaryStructureCountFilter.hhselect / residue_selector / ResidueSelector.hh
filters / SecondaryStructureCountFilter.hhselect / residue_selector / util.hh
filters / SecondaryStructureFilter.ccsequence / ABEGOManager.hh
filters / SecondaryStructureFilter.ccscoring / dssp / Dssp.hh
filters / SecondaryStructureFilter.ccpose / Pose.hh
filters / SecondaryStructureFilter.ccconformation / Residue.hh
filters / SecondaryStructureFilter.ccselect / residue_selector / TrueResidueSelector.hh
filters / SecondaryStructureFilter.cctypes.hh
filters / SecondaryStructureFilter.ccselect / residue_selector / util.hh
filters / SecondaryStructureFilter.hhpose / Pose.fwd.hh
filters / SecondaryStructureFilter.hhselect / residue_selector / ResidueSelector.fwd.hh
filters / SecondaryStructureHasResidueFilter.ccscoring / dssp / Dssp.hh
filters / SecondaryStructureHasResidueFilter.ccpack / task / PackerTask.hh
filters / SecondaryStructureHasResidueFilter.ccpose / Pose.hh
filters / SecondaryStructureHasResidueFilter.ccconformation / Residue.hh
filters / SecondaryStructureHasResidueFilter.ccpack / task / TaskFactory.hh
filters / SecondaryStructureHasResidueFilter.cctypes.hh
filters / SecondaryStructureHasResidueFilter.hhpose / Pose.fwd.hh
filters / SecondaryStructureHasResidueFilter.hhpack / task / TaskFactory.fwd.hh
potentials / SetAACompositionPotential.ccchemical / AA.hh
potentials / SetAACompositionPotential.ccpose / Pose.hh
potentials / SetAACompositionPotential.ccscoring / ScoreFunction.hh
potentials / SetAACompositionPotential.ccscoring / ScoreType.hh
potentials / SetAACompositionPotential.hhchemical / AA.hh
potentials / SetAACompositionPotential.hhpose / Pose.fwd.hh
potentials / SetAACompositionPotential.hhscoring / ScoreFunction.fwd.hh
potentials / SetAACompositionPotential.hhtypes.hh
potentials / SetSecStructEnergies.ccscoring / dssp / Dssp.hh
potentials / SetSecStructEnergies.ccpose / Pose.hh
potentials / SetSecStructEnergies.ccscoring / ScoreFunction.hh
potentials / SetSecStructEnergies.ccscoring / ScoreFunctionFactory.hh
potentials / SetSecStructEnergies.ccscoring / ScoreType.hh
potentials / SetSecStructEnergies.ccconformation / symmetry / SymmetricConformation.hh
potentials / SetSecStructEnergies.ccconformation / symmetry / SymmetryInfo.hh
potentials / SetSecStructEnergies.ccpose / symmetry / util.hh
potentials / SetSecStructEnergies.hhpose / Pose.fwd.hh
potentials / SetSecStructEnergies.hhscoring / ScoreFunction.fwd.hh
potentials / SetSecStructEnergies.hhconformation / symmetry / SymmetryInfo.fwd.hh
potentials / SetSecStructEnergies.hhtypes.hh
topology / Sheet.ccid / AtomID_Map.hh
topology / Sheet.ccscoring / sasa.hh
topology / Sheet.ccpose / util.hh
topology / Sheet.ccpose / util.tmpl.hh
topology / Sheet.hhpose / Pose.fwd.hh
topology / Sheet.hhtypes.hh
SheetConstraintGenerator.ccsequence / ABEGOManager.hh
SheetConstraintGenerator.ccscoring / constraints / AmbiguousConstraint.hh
SheetConstraintGenerator.ccscoring / constraints / AngleConstraint.hh
SheetConstraintGenerator.ccscoring / constraints / AtomPairConstraint.hh
SheetConstraintGenerator.ccscoring / constraints / BoundConstraint.hh
SheetConstraintGenerator.ccscoring / func / CircularHarmonicFunc.hh
SheetConstraintGenerator.ccscoring / constraints / DihedralConstraint.hh
SheetConstraintGenerator.ccscoring / dssp / Dssp.hh
SheetConstraintGenerator.ccscoring / func / Func.fwd.hh
SheetConstraintGenerator.ccscoring / func / HarmonicFunc.hh
SheetConstraintGenerator.ccpose / Pose.hh
SheetConstraintGenerator.ccconformation / Residue.hh
SheetConstraintGenerator.ccchemical / ResidueType.hh
SheetConstraintGenerator.ccscoring / func / ScalarWeightedFunc.hh
SheetConstraintGenerator.ccid / SequenceMapping.hh
SheetConstraintGenerator.ccid / types.hh
SheetConstraintGenerator.hhid / AtomID.fwd.hh
SheetConstraintGenerator.hhscoring / func / Func.fwd.hh
SheetConstraintGenerator.hhpose / Pose.fwd.hh
SheetConstraintGenerator.hhtypes.hh
filters / SheetTopologyFilter.ccsequence / ABEGOManager.hh
filters / SheetTopologyFilter.ccscoring / dssp / Dssp.hh
filters / SheetTopologyFilter.ccpose / PDBInfo.hh
filters / SheetTopologyFilter.ccpose / Pose.hh
filters / SheetTopologyFilter.ccconformation / Residue.hh
filters / SheetTopologyFilter.cctypes.hh
filters / SheetTopologyFilter.hhpose / Pose.fwd.hh
topology / SS_Info2.ccpose / Pose.hh
topology / SS_Info2.ccconformation / Residue.hh
topology / SS_Info2.ccchemical / ResidueType.hh
topology / SS_Info2.hhtypes.hh
potentials / sspot / SSPairPotential.ccscoring / Energies.hh
potentials / sspot / SSPairPotential.ccscoring / EnergyGraph.hh
potentials / sspot / SSPairPotential.cckinematics / Jump.hh
potentials / sspot / SSPairPotential.ccpose / Pose.hh
potentials / sspot / SSPairPotential.ccconformation / Residue.hh
potentials / sspot / SSPairPotential.ccscoring / SecondaryStructurePotential.hh
potentials / sspot / SSPairPotential.hhscoring / EnergyGraph.fwd.hh
potentials / sspot / SSPairPotential.hhpose / Pose.fwd.hh
potentials / sspot / SSPairPotential.hhtypes.hh
filters / StrandCurvatureByLevels.ccscoring / dssp / Dssp.hh
filters / StrandCurvatureByLevels.ccpose / Pose.hh
filters / StrandCurvatureByLevels.ccconformation / Residue.hh
filters / StrandCurvatureByLevels.cctypes.hh
filters / StrandCurvatureByLevels.hhpose / Pose.fwd.hh
filters / StrandHelixGeometryFilter.ccscoring / dssp / Dssp.hh
filters / StrandHelixGeometryFilter.ccpose / Pose.hh
filters / StrandHelixGeometryFilter.cctypes.hh
filters / StrandHelixGeometryFilter.hhpose / Pose.fwd.hh
topology / StrandPairing.hhtypes.hh
topology / util.ccid / AtomID_Map.hh
topology / util.ccscoring / dssp / Dssp.hh
topology / util.ccscoring / Energies.hh
topology / util.ccscoring / EnergiesCacheableDataType.hh
potentials / sspot / util.cckinematics / FoldTree.hh
topology / util.ccscoring / hbonds / HBondSet.hh
potentials / sspot / util.cckinematics / Jump.hh
topology / util.ccpose / Pose.hh
potentials / sspot / util.ccpose / Pose.hh
potentials / sspot / util.ccconformation / Residue.hh
topology / util.ccscoring / sasa.hh
topology / util.ccscoring / dssp / StrandPairing.hh
topology / util.ccpose / util.hh
topology / util.ccpose / util.tmpl.hh
topology / util.hhscoring / hbonds / HBondSet.fwd.hh
topology / util.hhpose / Pose.fwd.hh
potentials / sspot / util.hhpose / Pose.fwd.hh
topology / util.hhtypes.hh
potentials / sspot / util.hhtypes.hh