Rosetta  2021.16
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hybridization → core Relation

File in src/protocols/hybridizationIncludes file in src/core
AllResiduesChanged.hhfragment / FragSet.fwd.hh
AllResiduesChanged.hhpose / Pose.hh
AllResiduesChanged.hhconformation / Residue.hh
BackboneTorsionPerturbation.ccscoring / constraints / AtomPairConstraint.hh
BackboneTorsionPerturbation.ccoptimization / AtomTreeMinimizer.hh
BackboneTorsionPerturbation.ccoptimization / CartesianMinimizer.hh
BackboneTorsionPerturbation.cckinematics / FoldTree.hh
BackboneTorsionPerturbation.ccimport_pose / import_pose.hh
BackboneTorsionPerturbation.ccoptimization / MinimizerOptions.hh
BackboneTorsionPerturbation.cckinematics / MoveMap.hh
BackboneTorsionPerturbation.ccpack / task / PackerTask.hh
BackboneTorsionPerturbation.ccpose / Pose.hh
BackboneTorsionPerturbation.ccscoring / Ramachandran.hh
BackboneTorsionPerturbation.ccconformation / Residue.hh
BackboneTorsionPerturbation.ccconformation / ResidueFactory.hh
BackboneTorsionPerturbation.ccchemical / ResidueType.hh
BackboneTorsionPerturbation.ccchemical / ResidueTypeSet.hh
BackboneTorsionPerturbation.ccscoring / func / ScalarWeightedFunc.hh
BackboneTorsionPerturbation.ccscoring / ScoreFunction.hh
BackboneTorsionPerturbation.ccscoring / ScoreFunctionFactory.hh
BackboneTorsionPerturbation.ccscoring / ScoringManager.hh
BackboneTorsionPerturbation.ccpack / task / TaskFactory.hh
BackboneTorsionPerturbation.ccpack / task / operation / TaskOperations.hh
BackboneTorsionPerturbation.ccscoring / func / USOGFunc.hh
BackboneTorsionPerturbation.ccsequence / util.hh
BackboneTorsionPerturbation.ccpose / util.hh
BackboneTorsionPerturbation.ccchemical / VariantType.hh
BackboneTorsionPerturbation.hhoptimization / AtomTreeMinimizer.hh
BackboneTorsionPerturbation.hhoptimization / CartesianMinimizer.hh
BackboneTorsionPerturbation.hhoptimization / MinimizerOptions.fwd.hh
BackboneTorsionPerturbation.hhkinematics / MoveMap.hh
BackboneTorsionPerturbation.hhpose / Pose.fwd.hh
BackboneTorsionPerturbation.hhscoring / ScoreFunction.hh
BackboneTorsionPerturbation.hhpack / task / TaskFactory.hh
BackboneTorsionPerturbation.hhpack / task / operation / TaskOperation.fwd.hh
BackboneTorsionPerturbation.hhtypes.hh
BackboneTorsionSampler.ccoptimization / AtomTreeMinimizer.hh
BackboneTorsionSampler.ccoptimization / CartesianMinimizer.hh
BackboneTorsionSampler.cckinematics / FoldTree.hh
BackboneTorsionSampler.ccimport_pose / import_pose.hh
BackboneTorsionSampler.ccoptimization / MinimizerOptions.hh
BackboneTorsionSampler.cckinematics / MoveMap.hh
BackboneTorsionSampler.ccpack / task / PackerTask.hh
BackboneTorsionSampler.ccpose / Pose.hh
BackboneTorsionSampler.ccscoring / Ramachandran.hh
BackboneTorsionSampler.ccconformation / Residue.hh
BackboneTorsionSampler.ccconformation / ResidueFactory.hh
BackboneTorsionSampler.ccchemical / ResidueType.hh
BackboneTorsionSampler.ccchemical / ResidueTypeSet.hh
BackboneTorsionSampler.ccscoring / ScoreFunction.hh
BackboneTorsionSampler.ccscoring / ScoreFunctionFactory.hh
BackboneTorsionSampler.ccscoring / ScoringManager.hh
BackboneTorsionSampler.ccpack / task / TaskFactory.hh
BackboneTorsionSampler.ccpack / task / operation / TaskOperations.hh
BackboneTorsionSampler.ccsequence / util.hh
BackboneTorsionSampler.ccpose / util.hh
BackboneTorsionSampler.ccchemical / VariantType.hh
BackboneTorsionSampler.hhoptimization / AtomTreeMinimizer.hh
BackboneTorsionSampler.hhoptimization / CartesianMinimizer.hh
BackboneTorsionSampler.hhoptimization / MinimizerOptions.fwd.hh
BackboneTorsionSampler.hhkinematics / MoveMap.hh
BackboneTorsionSampler.hhpose / Pose.fwd.hh
BackboneTorsionSampler.hhscoring / ScoreFunction.hh
BackboneTorsionSampler.hhpack / task / TaskFactory.hh
BackboneTorsionSampler.hhpack / task / operation / TaskOperation.fwd.hh
BackboneTorsionSampler.hhtypes.hh
CartesianHybridize.ccscoring / constraints / AtomPairConstraint.hh
CartesianHybridize.ccoptimization / AtomTreeMinimizer.hh
CartesianHybridize.ccpose / datacache / CacheableDataType.hh
CartesianHybridize.ccoptimization / CartesianMinimizer.hh
CartesianHybridize.ccchemical / ChemicalManager.hh
CartesianHybridize.ccfragment / ConstantLengthFragSet.hh
CartesianHybridize.ccscoring / dssp / Dssp.hh
CartesianHybridize.ccscoring / Energies.hh
CartesianHybridize.ccscoring / methods / EnergyMethodOptions.hh
CartesianHybridize.cckinematics / FoldTree.hh
CartesianHybridize.ccfragment / FragData.hh
CartesianHybridize.ccfragment / FragmentIO.hh
CartesianHybridize.ccfragment / FragSet.hh
CartesianHybridize.ccfragment / Frame.hh
CartesianHybridize.ccfragment / FrameIterator.hh
CartesianHybridize.ccimport_pose / import_pose.hh
CartesianHybridize.ccoptimization / MinimizerOptions.hh
CartesianHybridize.cckinematics / MoveMap.hh
CartesianHybridize.ccpack / pack_rotamers.hh
CartesianHybridize.ccpack / task / PackerTask.hh
CartesianHybridize.ccpose / PDBInfo.hh
CartesianHybridize.ccpose / Pose.hh
CartesianHybridize.ccio / Remarks.hh
CartesianHybridize.ccscoring / rms_util.hh
CartesianHybridize.ccscoring / func / ScalarWeightedFunc.hh
CartesianHybridize.ccscoring / ScoreFunction.hh
CartesianHybridize.ccscoring / ScoreFunctionFactory.hh
CartesianHybridize.ccsequence / Sequence.hh
CartesianHybridize.ccsequence / SequenceAlignment.hh
CartesianHybridize.ccid / SequenceMapping.hh
CartesianHybridize.ccscoring / func / SOGFunc.hh
CartesianHybridize.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
CartesianHybridize.ccconformation / symmetry / SymmetricConformation.hh
CartesianHybridize.ccconformation / symmetry / SymmetryInfo.hh
CartesianHybridize.ccpack / task / TaskFactory.hh
CartesianHybridize.ccpack / task / operation / TaskOperations.hh
CartesianHybridize.ccpose / symmetry / util.hh
CartesianHybridize.ccconformation / util.hh
CartesianHybridize.ccpose / util.hh
CartesianHybridize.ccsequence / util.hh
CartesianHybridize.hhid / AtomID.hh
CartesianHybridize.hhid / AtomID_Map.hh
CartesianHybridize.hhfragment / FragData.hh
CartesianHybridize.hhfragment / FragSet.hh
CartesianHybridize.hhutil / kinematics_util.hh
CartesianHybridize.hhscoring / ScoreFunction.hh
CartesianSampler.ccscoring / constraints / AtomPairConstraint.hh
CartesianSampler.ccoptimization / AtomTreeMinimizer.hh
CartesianSampler.ccpose / datacache / CacheableDataType.hh
CartesianSampler.ccoptimization / CartesianMinimizer.hh
CartesianSampler.ccchemical / ChemicalManager.hh
CartesianSampler.ccfragment / ConstantLengthFragSet.hh
CartesianSampler.ccscoring / constraints / ConstraintSet.hh
CartesianSampler.ccscoring / constraints / CoordinateConstraint.hh
CartesianSampler.ccscoring / electron_density / ElectronDensity.hh
CartesianSampler.ccscoring / Energies.hh
CartesianSampler.ccscoring / methods / EnergyMethodOptions.hh
CartesianSampler.cckinematics / FoldTree.hh
CartesianSampler.ccfragment / FragData.hh
CartesianSampler.ccfragment / FragmentIO.hh
CartesianSampler.ccfragment / FragSet.hh
CartesianSampler.ccfragment / Frame.hh
CartesianSampler.ccfragment / FrameIterator.hh
CartesianSampler.ccscoring / func / HarmonicFunc.hh
CartesianSampler.ccimport_pose / import_pose.hh
CartesianSampler.ccoptimization / MinimizerOptions.hh
CartesianSampler.cckinematics / MoveMap.hh
CartesianSampler.ccpack / pack_rotamers.hh
CartesianSampler.ccpack / task / PackerTask.hh
CartesianSampler.ccio / pdb / pdb_writer.hh
CartesianSampler.ccpose / PDBInfo.hh
CartesianSampler.ccscoring / cryst / PhenixInterface.hh
CartesianSampler.ccpose / Pose.hh
CartesianSampler.ccio / Remarks.hh
CartesianSampler.ccselect / residue_selector / ResidueSelector.hh
CartesianSampler.ccscoring / rms_util.hh
CartesianSampler.ccscoring / func / ScalarWeightedFunc.hh
CartesianSampler.ccscoring / ScoreFunction.hh
CartesianSampler.ccscoring / ScoreFunctionFactory.hh
CartesianSampler.ccpose / selection.hh
CartesianSampler.ccsequence / Sequence.hh
CartesianSampler.ccsequence / SequenceAlignment.hh
CartesianSampler.ccid / SequenceMapping.hh
CartesianSampler.ccscoring / func / SOGFunc.hh
CartesianSampler.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
CartesianSampler.ccconformation / symmetry / SymmetricConformation.hh
CartesianSampler.ccconformation / symmetry / SymmetryInfo.hh
CartesianSampler.ccpack / task / TaskFactory.hh
CartesianSampler.ccpack / task / operation / TaskOperations.hh
CartesianSampler.ccscoring / func / USOGFunc.hh
CartesianSampler.ccpose / symmetry / util.hh
CartesianSampler.ccconformation / util.hh
CartesianSampler.ccpose / util.hh
CartesianSampler.ccio / util.hh
CartesianSampler.ccsequence / util.hh
CartesianSampler.ccselect / util.hh
CartesianSampler.hhid / AtomID.hh
CartesianSampler.hhid / AtomID_Map.hh
CartesianSampler.hhfragment / FragData.hh
CartesianSampler.hhfragment / FragSet.hh
CartesianSampler.hhutil / kinematics_util.hh
CartesianSampler.hhselect / residue_selector / ResidueSelector.fwd.hh
CartesianSampler.hhscoring / ScoreFunction.hh
ChunkTrialMover.ccid / AtomID.hh
ChunkTrialMover.ccid / AtomID_Map.hh
ChunkTrialMover.cckinematics / FoldTree.hh
ChunkTrialMover.ccfragment / Frame.hh
ChunkTrialMover.ccfragment / FrameIterator.hh
ChunkTrialMover.ccutil / kinematics_util.hh
ChunkTrialMover.ccpose / PDBInfo.hh
ChunkTrialMover.ccconformation / Residue.hh
ChunkTrialMover.hhid / AtomID.hh
ChunkTrialMover.hhid / AtomID_Map.hh
ChunkTrialMover.hhfragment / Frame.hh
ChunkTrialMover.hhfragment / FrameIterator.hh
ChunkTrialMover.hhutil / kinematics_util.hh
DDomainParse.ccscoring / constraints / AtomPairConstraint.hh
DDomainParse.ccscoring / constraints / Constraint.hh
DDomainParse.ccscoring / constraints / ConstraintIO.hh
DDomainParse.ccscoring / constraints / ConstraintSet.hh
DDomainParse.cckinematics / Edge.hh
DDomainParse.cckinematics / FoldTree.hh
DDomainParse.cckinematics / Jump.hh
DDomainParse.ccpack / task / PackerTask.hh
DDomainParse.ccpose / PDBInfo.hh
DDomainParse.ccpose / Pose.hh
DDomainParse.ccconformation / Residue.hh
DDomainParse.ccchemical / ResidueType.hh
DDomainParse.ccscoring / func / ScalarWeightedFunc.hh
DDomainParse.ccscoring / func / SOGFunc.hh
DDomainParse.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
DDomainParse.ccconformation / symmetry / SymmetricConformation.hh
DDomainParse.ccconformation / symmetry / SymmetryInfo.hh
DDomainParse.cctypes.hh
DDomainParse.ccpose / symmetry / util.hh
DDomainParse.ccscoring / constraints / util.hh
DDomainParse.hhpose / Pose.fwd.hh
DDomainParse.hhtypes.hh
DomainAssembly.ccid / AtomID.hh
DomainAssembly.ccid / AtomID_Map.hh
DomainAssembly.ccconformation / Conformation.hh
DomainAssembly.ccscoring / Energies.hh
DomainAssembly.ccscoring / methods / EnergyMethodOptions.hh
DomainAssembly.ccpose / PDBInfo.hh
DomainAssembly.ccscoring / ScoreFunction.hh
DomainAssembly.ccscoring / ScoreFunctionFactory.hh
DomainAssembly.cctypes.hh
DomainAssembly.ccpose / util.hh
DomainAssembly.ccchemical / VariantType.hh
DomainAssembly.hhscoring / constraints / AtomPairConstraint.hh
DomainAssembly.hhscoring / constraints / BoundConstraint.hh
DomainAssembly.hhchemical / ChemicalManager.hh
DomainAssembly.hhkinematics / FoldTree.hh
DomainAssembly.hhfragment / FragSet.fwd.hh
DomainAssembly.hhfragment / FragSet.hh
DomainAssembly.hhkinematics / Jump.hh
DomainAssembly.hhpose / Pose.hh
DomainAssembly.hhconformation / Residue.hh
DomainAssembly.hhscoring / ScoreFunction.hh
DomainAssembly.hhscoring / ScoreFunctionFactory.hh
DomainAssembly.hhtypes.hh
FoldTreeHybridize.ccid / AtomID.hh
FoldTreeHybridize.ccid / AtomID_Map.hh
FoldTreeHybridize.ccscoring / constraints / AtomPairConstraint.hh
FoldTreeHybridize.ccoptimization / AtomTreeMinimizer.hh
FoldTreeHybridize.ccscoring / constraints / BoundConstraint.hh
FoldTreeHybridize.ccconformation / Conformation.hh
FoldTreeHybridize.ccfragment / ConstantLengthFragSet.hh
FoldTreeHybridize.ccscoring / constraints / ConstraintIO.hh
FoldTreeHybridize.ccscoring / constraints / ConstraintSet.hh
FoldTreeHybridize.ccscoring / methods / EnergyMethodOptions.hh
FoldTreeHybridize.ccpose / extra_pose_info_util.hh
FoldTreeHybridize.ccfragment / Frame.hh
FoldTreeHybridize.ccfragment / FrameIterator.hh
FoldTreeHybridize.ccimport_pose / import_pose.hh
FoldTreeHybridize.ccutil / kinematics_util.hh
FoldTreeHybridize.ccoptimization / MinimizerOptions.hh
FoldTreeHybridize.cckinematics / MoveMap.hh
FoldTreeHybridize.ccpack / task / PackerTask.hh
FoldTreeHybridize.ccpose / PDBInfo.hh
FoldTreeHybridize.ccpose / Pose.hh
FoldTreeHybridize.ccconformation / Residue.hh
FoldTreeHybridize.ccconformation / ResidueFactory.hh
FoldTreeHybridize.ccchemical / ResidueProperties.hh
FoldTreeHybridize.ccchemical / ResidueTypeSet.hh
FoldTreeHybridize.ccscoring / rms_util.hh
FoldTreeHybridize.ccscoring / ScoreFunction.hh
FoldTreeHybridize.ccscoring / ScoreFunctionFactory.hh
FoldTreeHybridize.ccfragment / SecondaryStructure.hh
FoldTreeHybridize.ccsequence / Sequence.hh
FoldTreeHybridize.ccscoring / dssp / StrandPairing.hh
FoldTreeHybridize.ccpose / subpose_manipulation_util.hh
FoldTreeHybridize.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
FoldTreeHybridize.ccconformation / symmetry / SymmetricConformation.hh
FoldTreeHybridize.ccconformation / symmetry / SymmetryInfo.hh
FoldTreeHybridize.ccpack / task / TaskFactory.hh
FoldTreeHybridize.ccpose / symmetry / util.hh
FoldTreeHybridize.ccfragment / util.hh
FoldTreeHybridize.ccconformation / util.hh
FoldTreeHybridize.ccsequence / util.hh
FoldTreeHybridize.ccpose / util.hh
FoldTreeHybridize.hhid / AtomID.hh
FoldTreeHybridize.hhid / AtomID_Map.hh
FoldTreeHybridize.hhkinematics / FoldTree.hh
FoldTreeHybridize.hhfragment / FragSet.fwd.hh
FoldTreeHybridize.hhutil / kinematics_util.hh
FoldTreeHybridize.hhpack / task / PackerTask.fwd.hh
FoldTreeHybridize.hhscoring / dssp / PairingsList.hh
FoldTreeHybridize.hhscoring / ScoreFunction.hh
FoldTreeHybridize.hhpack / task / TaskFactory.fwd.hh
FragmentBiasAssigner.ccscoring / electron_density / ElectronDensity.hh
FragmentBiasAssigner.ccscoring / Energies.hh
FragmentBiasAssigner.ccscoring / EnergyGraph.hh
FragmentBiasAssigner.ccscoring / EnergyMap.hh
FragmentBiasAssigner.ccscoring / methods / EnergyMethodOptions.hh
FragmentBiasAssigner.cckinematics / FoldTree.hh
FragmentBiasAssigner.ccfragment / FragSet.hh
FragmentBiasAssigner.ccfragment / FrameIterator.hh
FragmentBiasAssigner.ccpose / PDBInfo.hh
FragmentBiasAssigner.ccpose / Pose.hh
FragmentBiasAssigner.ccscoring / ScoreFunction.hh
FragmentBiasAssigner.ccscoring / ScoreFunctionFactory.hh
FragmentBiasAssigner.ccscoring / ScoreType.hh
FragmentBiasAssigner.ccscoring / ScoreTypeManager.hh
FragmentBiasAssigner.ccconformation / symmetry / SymmetricConformation.hh
FragmentBiasAssigner.ccconformation / symmetry / SymmetryInfo.hh
FragmentBiasAssigner.ccscoring / electron_density / util.hh
FragmentBiasAssigner.ccpose / symmetry / util.hh
FragmentBiasAssigner.hhscoring / electron_density / ElectronDensity.hh
FragmentBiasAssigner.hhscoring / Energies.hh
FragmentBiasAssigner.hhscoring / EnergyGraph.hh
FragmentBiasAssigner.hhscoring / EnergyMap.hh
FragmentBiasAssigner.hhscoring / methods / EnergyMethodOptions.hh
FragmentBiasAssigner.hhkinematics / FoldTree.hh
FragmentBiasAssigner.hhfragment / FragSet.hh
FragmentBiasAssigner.hhfragment / FrameIterator.hh
FragmentBiasAssigner.hhpose / PDBInfo.hh
FragmentBiasAssigner.hhpose / Pose.hh
FragmentBiasAssigner.hhscoring / ScoreFunction.hh
FragmentBiasAssigner.hhscoring / ScoreFunctionFactory.hh
FragmentBiasAssigner.hhscoring / ScoreType.hh
FragmentBiasAssigner.hhscoring / ScoreTypeManager.hh
FragmentBiasAssigner.hhconformation / symmetry / SymmetricConformation.hh
FragmentBiasAssigner.hhconformation / symmetry / SymmetryInfo.hh
FragmentBiasAssigner.hhpose / symmetry / util.hh
HybridizeFoldtreeDynamic.ccconformation / Conformation.hh
HybridizeFoldtreeDynamic.ccscoring / constraints / ConstraintSet.hh
HybridizeFoldtreeDynamic.cckinematics / FoldTree.hh
HybridizeFoldtreeDynamic.ccimport_pose / import_pose.hh
HybridizeFoldtreeDynamic.ccutil / kinematics_util.hh
HybridizeFoldtreeDynamic.ccpack / task / PackerTask.hh
HybridizeFoldtreeDynamic.ccpose / Pose.hh
HybridizeFoldtreeDynamic.ccscoring / rms_util.hh
HybridizeFoldtreeDynamic.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
HybridizeFoldtreeDynamic.ccconformation / symmetry / SymmetricConformation.hh
HybridizeFoldtreeDynamic.ccconformation / symmetry / SymmetryInfo.hh
HybridizeFoldtreeDynamic.cctypes.hh
HybridizeFoldtreeDynamic.ccconformation / symmetry / util.hh
HybridizeFoldtreeDynamic.ccpose / symmetry / util.hh
HybridizeFoldtreeDynamic.ccpose / variant_util.hh
HybridizeFoldtreeDynamic.ccchemical / VariantType.hh
HybridizeFoldtreeDynamic.hhkinematics / FoldTree.hh
HybridizeFoldtreeDynamic.hhpose / Pose.fwd.hh
HybridizeFoldtreeDynamic.hhtypes.hh
HybridizeProtocol.ccpose / datacache / CacheableDataType.hh
HybridizeProtocol.ccoptimization / CartesianMinimizer.hh
HybridizeProtocol.ccchemical / ChemicalManager.hh
HybridizeProtocol.ccscoring / func / CircularSplineFunc.hh
HybridizeProtocol.ccfragment / ConstantLengthFragSet.hh
HybridizeProtocol.ccscoring / constraints / Constraint.hh
HybridizeProtocol.ccscoring / constraints / ConstraintIO.hh
HybridizeProtocol.ccscoring / constraints / ConstraintSet.hh
HybridizeProtocol.ccscoring / constraints / CoordinateConstraint.hh
HybridizeProtocol.ccio / CrystInfo.hh
HybridizeProtocol.ccscoring / constraints / DihedralConstraint.hh
HybridizeProtocol.ccscoring / dssp / Dssp.hh
HybridizeProtocol.ccscoring / methods / EnergyMethodOptions.hh
HybridizeProtocol.ccpose / extra_pose_info_util.hh
HybridizeProtocol.cckinematics / FoldTree.hh
HybridizeProtocol.ccfragment / FragData.hh
HybridizeProtocol.ccfragment / FragID_Iterator.hh
HybridizeProtocol.ccfragment / FragmentIO.hh
HybridizeProtocol.ccfragment / FragSet.hh
HybridizeProtocol.ccfragment / Frame.hh
HybridizeProtocol.ccfragment / FrameIterator.hh
HybridizeProtocol.ccscoring / func / HarmonicFunc.hh
HybridizeProtocol.ccscoring / hbonds / HBondOptions.hh
HybridizeProtocol.ccimport_pose / import_pose.hh
HybridizeProtocol.ccfragment / IndependentBBTorsionSRFD.hh
HybridizeProtocol.ccoptimization / MinimizerOptions.hh
HybridizeProtocol.cckinematics / MoveMap.hh
HybridizeProtocol.ccpack / task / operation / NoRepackDisulfides.hh
HybridizeProtocol.ccpack / task / operation / OperateOnCertainResidues.hh
HybridizeProtocol.ccpack / task / PackerTask.hh
HybridizeProtocol.ccpose / PDBInfo.hh
HybridizeProtocol.ccpose / Pose.hh
HybridizeProtocol.ccpack / task / operation / ResFilters.hh
HybridizeProtocol.ccconformation / Residue.hh
HybridizeProtocol.ccconformation / ResidueFactory.hh
HybridizeProtocol.ccchemical / ResidueType.hh
HybridizeProtocol.ccchemical / ResidueTypeSet.hh
HybridizeProtocol.ccpack / task / operation / ResLvlTaskOperations.hh
HybridizeProtocol.ccscoring / rms_util.hh
HybridizeProtocol.ccinit / score_function_corrections.hh
HybridizeProtocol.ccscoring / ScoreFunctionFactory.hh
HybridizeProtocol.ccsequence / ScoringScheme.hh
HybridizeProtocol.ccpose / selection.hh
HybridizeProtocol.ccsequence / Sequence.hh
HybridizeProtocol.ccsequence / SequenceAlignment.hh
HybridizeProtocol.ccio / silent / SilentFileOptions.hh
HybridizeProtocol.ccio / silent / SilentStruct.hh
HybridizeProtocol.ccio / silent / SilentStructFactory.hh
HybridizeProtocol.ccsequence / SimpleScoringScheme.hh
HybridizeProtocol.ccsequence / SWAligner.hh
HybridizeProtocol.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
HybridizeProtocol.ccconformation / symmetry / SymmetricConformation.hh
HybridizeProtocol.ccconformation / symmetry / SymmetryInfo.hh
HybridizeProtocol.ccpack / task / TaskFactory.hh
HybridizeProtocol.ccpack / task / operation / TaskOperation.hh
HybridizeProtocol.ccpack / task / operation / TaskOperations.hh
HybridizeProtocol.ccpose / symmetry / util.hh
HybridizeProtocol.ccscoring / constraints / util.hh
HybridizeProtocol.ccconformation / util.hh
HybridizeProtocol.ccsequence / util.hh
HybridizeProtocol.ccfragment / util.hh
HybridizeProtocol.ccpose / util.hh
HybridizeProtocol.ccfragment / picking_old / vall / util.hh
HybridizeProtocol.hhscoring / constraints / ConstraintSet.fwd.hh
HybridizeProtocol.hhfragment / FragSet.fwd.hh
HybridizeProtocol.hhpack / task / PackerTask.fwd.hh
HybridizeProtocol.hhpose / Pose.fwd.hh
HybridizeProtocol.hhsequence / SequenceAlignment.fwd.hh
HybridizeProtocol.hhsequence / SequenceAlignment.hh
HybridizeProtocol.hhpack / task / TaskFactory.fwd.hh
InsertChunkMover.ccid / AtomID.hh
InsertChunkMover.ccid / AtomID_Map.hh
InsertChunkMover.cckinematics / AtomTree.hh
InsertChunkMover.ccpose / datacache / CacheableDataType.hh
InsertChunkMover.ccfragment / Frame.hh
InsertChunkMover.ccfragment / FrameIterator.hh
InsertChunkMover.ccutil / kinematics_util.hh
InsertChunkMover.ccpose / Pose.hh
InsertChunkMover.ccconformation / Residue.hh
InsertChunkMover.ccconformation / util.hh
InsertChunkMover.ccpose / util.hh
InsertChunkMover.ccpose / util.tmpl.hh
InsertChunkMover.hhid / AtomID.hh
InsertChunkMover.hhid / AtomID_Map.hh
InsertChunkMover.hhfragment / Frame.hh
InsertChunkMover.hhfragment / FrameIterator.hh
InsertChunkMover.hhutil / kinematics_util.hh
InsertChunkMover.hhpose / Pose.fwd.hh
InsertChunkMover.hhpose / Pose.hh
MRMover.ccoptimization / AtomTreeMinimizer.hh
MRMover.ccconformation / Conformation.hh
MRMover.ccscoring / electron_density / ElectronDensity.hh
MRMover.cckinematics / MoveMap.hh
MRMover.ccpack / task / PackerTask.hh
MRMover.ccpose / PDBInfo.hh
MRMover.ccpose / Pose.hh
MRMover.ccconformation / Residue.hh
MRMover.ccscoring / ScoreFunction.hh
MRMover.ccscoring / ScoreFunctionFactory.hh
MRMover.ccsequence / ScoringScheme.fwd.hh
MRMover.ccsequence / Sequence.hh
MRMover.ccsequence / SequenceAlignment.hh
MRMover.ccid / SequenceMapping.hh
MRMover.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
MRMover.ccpack / task / TaskFactory.hh
MRMover.ccpose / symmetry / util.hh
MRMover.ccscoring / constraints / util.hh
MRMover.ccscoring / electron_density / util.hh
MRMover.ccconformation / util.hh
MRMover.ccpose / variant_util.hh
MRMover.hhfragment / FragmentIO.hh
MRMover.hhfragment / FragSet.hh
MRMover.hhfragment / Frame.hh
MRMover.hhfragment / FrameIterator.hh
MRMover.hhfragment / FrameIteratorWorker_.hh
MRMover.hhpose / Pose.fwd.hh
MRMover.hhscoring / ScoreFunction.hh
MRMover.hhtypes.hh
TemplateHistory.ccpose / datacache / CacheableDataType.hh
TemplateHistory.ccpose / Pose.hh
TemplateHistory.hhpose / Pose.fwd.hh
TemplateHistory.hhtypes.hh
TMalign.ccid / AtomID.hh
TMalign.ccid / AtomID_Map.hh
TMalign.ccpose / PDBInfo.hh
TMalign.ccpose / Pose.hh
TMalign.ccconformation / Residue.hh
TMalign.hhid / AtomID_Map.hh
TMalign.hhpose / Pose.fwd.hh
util.ccscoring / constraints / AtomPairConstraint.hh
util.ccfragment / ConstantLengthFragSet.hh
util.ccscoring / constraints / Constraint.hh
util.ccscoring / constraints / ConstraintIO.hh
util.ccscoring / constraints / ConstraintSet.hh
util.ccscoring / constraints / CoordinateConstraint.hh
util.ccscoring / dssp / Dssp.hh
util.cckinematics / Edge.hh
util.cckinematics / FoldTree.hh
util.ccfragment / FragSet.hh
util.ccfragment / Frame.hh
util.ccscoring / func / HarmonicFunc.hh
util.ccfragment / IndependentBBTorsionSRFD.hh
util.cckinematics / Jump.hh
util.ccpack / task / PackerTask.hh
util.ccpose / PDBInfo.hh
util.ccpose / Pose.hh
util.ccconformation / Residue.hh
util.ccchemical / ResidueType.hh
util.ccscoring / rms_util.hh
util.ccscoring / func / ScalarWeightedFunc.hh
util.ccsequence / Sequence.hh
util.ccscoring / func / SOGFunc.hh
util.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
util.ccconformation / symmetry / SymmetricConformation.hh
util.ccconformation / symmetry / SymmetryInfo.hh
util.cctypes.hh
util.ccscoring / func / USOGFunc.hh
util.ccsequence / util.hh
util.ccpose / symmetry / util.hh
util.ccfragment / picking_old / vall / util.hh
util.ccscoring / constraints / util.hh
util.ccpose / util.hh
util.hhid / AtomID.hh
util.hhid / AtomID_Map.hh
util.hhkinematics / Edge.hh
util.hhkinematics / FoldTree.hh
util.hhfragment / FragSet.fwd.hh
util.hhkinematics / Jump.hh
util.hhpose / Pose.hh
util.hhconformation / Residue.hh
util.hhsequence / SequenceAlignment.hh
util.hhtypes.hh
WeightedFragmentSmoothTrialMover.ccfragment / Frame.hh
WeightedFragmentSmoothTrialMover.ccfragment / FrameIterator.hh
WeightedFragmentSmoothTrialMover.hhfragment / FragSet.hh
WeightedFragmentSmoothTrialMover.hhfragment / Frame.hh
WeightedFragmentSmoothTrialMover.hhfragment / FrameList.hh
WeightedFragmentSmoothTrialMover.hhtypes.hh
WeightedFragmentTrialMover.ccfragment / Frame.hh
WeightedFragmentTrialMover.ccfragment / FrameIterator.hh
WeightedFragmentTrialMover.hhfragment / FragSet.hh