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jd2 → core Relation

File in src/protocols/jd2Includes file in src/core
archive / ArchiveBase.ccchemical / ChemicalManager.hh
archive / ArchiveBase.cckinematics / Jump.hh
archive / ArchiveBase.ccpose / Pose.hh
archive / ArchiveBase.ccconformation / Residue.hh
archive / ArchiveBase.ccscoring / ScoreFunction.hh
archive / ArchiveBase.ccscoring / ScoreFunctionFactory.hh
archive / ArchiveBase.ccio / silent / SilentFileData.hh
archive / ArchiveBase.ccio / silent / SilentFileOptions.hh
archive / ArchiveBase.hhpose / Pose.fwd.hh
archive / ArchiveBase.hhscoring / ScoreFunction.fwd.hh
archive / ArchiveBase.hhio / silent / silent.fwd.hh
archive / ArchiveBase.hhtypes.hh
archive / ArchiveManager.ccio / silent / SilentFileData.hh
archive / ArchiveManager.ccio / silent / SilentFileOptions.hh
archive / ArchiveManager.hhio / silent / silent.fwd.hh
archive / ArchiveManager.hhtypes.hh
AtomTreeDiffJobInputter.ccimport_pose / import_pose.hh
AtomTreeDiffJobInputter.ccpose / Pose.hh
AtomTreeDiffJobInputter.hhimport_pose / atom_tree_diffs / atom_tree_diff.hh
AtomTreeDiffJobInputter.hhpose / Pose.fwd.hh
AtomTreeDiffJobOutputter.ccimport_pose / atom_tree_diffs / atom_tree_diff.hh
AtomTreeDiffJobOutputter.ccpose / Pose.hh
AtomTreeDiffJobOutputter.hhimport_pose / atom_tree_diffs / atom_tree_diff.hh
AtomTreeDiffJobOutputter.hhpose / Pose.hh
BatchJobInputter.hhpose / Pose.fwd.hh
BOINCJobDistributor.ccio / silent / util.hh
BOINCJobDistributor.hhtypes.hh
EmptyPoseJobInputter.ccpose / Pose.hh
EmptyPoseJobInputter.ccsequence / util.hh
EmptyPoseJobInputter.ccpose / symmetry / util.hh
EmptyPoseJobInputter.hhpose / Pose.fwd.hh
archive / EvaluatedArchive.ccscoring / Energies.hh
archive / EvaluatedArchive.ccpose / Pose.hh
archive / EvaluatedArchive.ccscoring / ScoreFunction.hh
archive / EvaluatedArchive.ccio / silent / SilentFileData.hh
archive / EvaluatedArchive.hhscoring / constraints / ConstraintSet.fwd.hh
archive / EvaluatedArchive.hhpose / Pose.fwd.hh
archive / EvaluatedArchive.hhscoring / ResidualDipolarCoupling.fwd.hh
archive / EvaluatedArchive.hhio / silent / silent.fwd.hh
archive / EvaluatedArchive.hhtypes.hh
FileJobOutputter.ccpose / datacache / CacheableDataType.hh
FileJobOutputter.ccscoring / Energies.hh
FileJobOutputter.ccpose / Pose.hh
FileJobOutputter.ccio / raw_data / ScoreFileData.hh
FileJobOutputter.ccio / raw_data / ScoreMap.hh
FileJobOutputter.hhpose / Pose.fwd.hh
FileSystemJobDistributor.hhtypes.hh
InnerJob.ccpose / Pose.hh
InnerJob.ccpose / util.hh
InnerJob.hhpose / Pose.fwd.hh
InnerJob.hhtypes.hh
InnerMultiThreadingJob.ccpose / Pose.hh
InnerMultiThreadingJob.hhpose / Pose.fwd.hh
InnerMultiThreadingJob.hhsequence / SequenceAlignment.fwd.hh
InnerMultiThreadingJob.hhtypes.hh
internal_util.ccchemical / ChemicalManager.hh
internal_util.ccimport_pose / import_pose.hh
internal_util.ccpose / Pose.hh
internal_util.ccio / silent / SilentFileData.hh
internal_util.ccio / silent / SilentFileOptions.hh
internal_util.ccio / silent / SilentStruct.hh
internal_util.ccio / silent / SilentStructFactory.hh
internal_util.hhpose / Pose.fwd.hh
internal_util.hhio / silent / SilentStruct.fwd.hh
internal_util.hhtypes.hh
JD2ResourceManagerJobInputter.ccchemical / ChemicalManager.hh
JD2ResourceManagerJobInputter.ccconformation / Conformation.hh
JD2ResourceManagerJobInputter.ccpose / Pose.hh
JD2ResourceManagerJobInputter.ccchemical / PoseResidueTypeSet.hh
JD2ResourceManagerJobInputter.ccchemical / ResidueType.hh
JD2ResourceManagerJobInputter.ccchemical / ResidueTypeSet.hh
Job.ccpose / Pose.hh
Job.hhpose / Pose.fwd.hh
Job.hhtypes.hh
JobDistributor.ccpose / Pose.hh
JobDistributor.ccscoring / ScoreFunction.hh
JobDistributor.ccscoring / ScoreFunctionFactory.hh
JobDistributor.ccpose / symmetry / util.hh
JobDistributor.hhpose / Pose.fwd.hh
JobDistributor.hhtypes.hh
JobInputter.ccpose / Pose.hh
JobInputter.hhpose / Pose.fwd.hh
JobInputter.hhtypes.hh
JobOutputter.hhpose / Pose.fwd.hh
JobOutputter.hhio / silent / SilentStruct.fwd.hh
JobOutputterObserver.hhpose / Pose.fwd.hh
JobsContainer.hhpose / Pose.fwd.hh
JobsContainer.hhtypes.hh
LargeNstructJobInputter.ccpose / annotated_sequence.hh
LargeNstructJobInputter.ccchemical / ChemicalManager.fwd.hh
LargeNstructJobInputter.ccpose / Pose.hh
LargeNstructJobInputter.ccsequence / util.hh
LargeNstructJobInputter.ccpose / symmetry / util.hh
LargeNstructJobInputter.hhpose / Pose.fwd.hh
LazySilentFileJobInputter.ccpose / extra_pose_info_util.hh
LazySilentFileJobInputter.ccpose / Pose.hh
LazySilentFileJobInputter.ccio / silent / SilentFileOptions.hh
LazySilentFileJobInputter.hhpose / Pose.fwd.hh
LazySilentFileJobInputter.hhio / silent / SilentFileData.hh
LazySilentFileJobInputter.hhio / silent / SilentStruct.fwd.hh
mmCIFJobOutputter.ccpose / datacache / CacheableDataType.hh
mmCIFJobOutputter.ccio / mmcif / cif_writer.hh
mmCIFJobOutputter.ccpose / Pose.hh
mmCIFJobOutputter.ccio / StructFileRep.fwd.hh
mmCIFJobOutputter.ccio / StructFileRepOptions.hh
mmCIFJobOutputter.cctypes.hh
mmCIFJobOutputter.ccio / util.hh
mmCIFJobOutputter.hhpose / Pose.fwd.hh
mmCIFJobOutputter.hhio / StructFileRep.fwd.hh
mmtfJobOutputter.ccpose / datacache / CacheableDataType.hh
mmtfJobOutputter.ccio / mmtf / mmtf_writer.hh
mmtfJobOutputter.ccpose / Pose.hh
mmtfJobOutputter.ccio / StructFileRep.fwd.hh
mmtfJobOutputter.ccio / StructFileRepOptions.hh
mmtfJobOutputter.cctypes.hh
mmtfJobOutputter.ccio / util.hh
mmtfJobOutputter.hhpose / Pose.fwd.hh
mmtfJobOutputter.hhio / StructFileRep.fwd.hh
archive / MPIArchiveJobDistributor.hhpose / Pose.fwd.hh
archive / MPIArchiveJobDistributor.hhtypes.hh
MpiFileBuffer.hhtypes.hh
MPIFileBufJobDistributor.hhpose / Pose.fwd.hh
MPIFileBufJobDistributor.hhtypes.hh
MPIMultiCommJobDistributor.hhpose / Pose.fwd.hh
MPIMultiCommJobDistributor.hhtypes.hh
MPIWorkPartitionJobDistributor.hhpose / Pose.fwd.hh
MPIWorkPartitionJobDistributor.hhtypes.hh
MPIWorkPoolJobDistributor.hhpose / Pose.fwd.hh
MPIWorkPoolJobDistributor.hhtypes.hh
MultiThreadingJob.cctypes.hh
MultiThreadingJob.hhpose / Pose.fwd.hh
MultiThreadingJob.hhtypes.hh
NoOutputJobOutputter.hhpose / Pose.fwd.hh
archive / NormalizedEvaluatedArchive.ccscoring / ScoreFunction.hh
archive / NormalizedEvaluatedArchive.hhscoring / constraints / ConstraintSet.fwd.hh
archive / NormalizedEvaluatedArchive.hhpose / Pose.fwd.hh
archive / NormalizedEvaluatedArchive.hhscoring / ResidualDipolarCoupling.fwd.hh
archive / NormalizedEvaluatedArchive.hhio / silent / silent.fwd.hh
archive / NormalizedEvaluatedArchive.hhtypes.hh
PDBJobInputter.ccimport_pose / import_pose.hh
PDBJobInputter.ccutil / metalloproteins_util.hh
PDBJobInputter.ccpose / Pose.hh
PDBJobInputter.ccpose / full_model_info / util.hh
PDBJobInputter.hhpose / Pose.fwd.hh
PDBJobOutputter.ccio / pdb / build_pose_as_is.hh
PDBJobOutputter.ccpose / datacache / CacheableDataType.hh
PDBJobOutputter.ccio / pdb / pdb_writer.hh
PDBJobOutputter.ccpose / Pose.hh
PDBJobOutputter.cctypes.hh
PDBJobOutputter.ccio / util.hh
PDBJobOutputter.hhpose / Pose.fwd.hh
PoseInputStreamJobInputter.cckinematics / Jump.hh
PoseInputStreamJobInputter.ccimport_pose / pose_stream / MetaPoseInputStream.hh
PoseInputStreamJobInputter.ccpose / Pose.hh
PoseInputStreamJobInputter.ccconformation / Residue.hh
PoseInputStreamJobInputter.ccchemical / ResidueTypeSet.fwd.hh
PoseInputStreamJobInputter.ccchemical / util.hh
PoseInputStreamJobInputter.ccimport_pose / pose_stream / util.hh
PoseInputStreamJobInputter.hhimport_pose / pose_stream / MetaPoseInputStream.hh
RNA_DeNovoJobOutputter.ccpose / datacache / CacheableDataType.hh
RNA_DeNovoJobOutputter.ccpose / Pose.hh
RNA_DeNovoJobOutputter.ccio / silent / SilentFileData.hh
RNA_DeNovoJobOutputter.ccio / silent / SilentFileOptions.hh
RNA_DeNovoJobOutputter.ccio / silent / SilentStructFactory.hh
RNA_DeNovoJobOutputter.hhpose / Pose.fwd.hh
RNA_DeNovoJobOutputter.hhtypes.hh
ScoreOnlyJobOutputter.ccio / silent / SilentFileData.hh
ScoreOnlyJobOutputter.ccio / silent / SilentFileOptions.hh
ScoreOnlyJobOutputter.hhpose / Pose.fwd.hh
ScoreOnlyJobOutputter.hhtypes.hh
ScreeningJobInputter.ccchemical / ChemicalManager.hh
ScreeningJobInputter.ccconformation / Conformation.hh
ScreeningJobInputter.ccimport_pose / import_pose.hh
ScreeningJobInputter.ccpose / Pose.hh
ScreeningJobInputter.ccchemical / PoseResidueTypeSet.hh
ScreeningJobInputter.ccchemical / ResidueTypeSet.hh
ScreeningJobInputter.hhpose / Pose.fwd.hh
SerializedPoseJobInputter.ccimport_pose / import_pose.hh
SerializedPoseJobInputter.ccpose / Pose.hh
SerializedPoseJobInputter.hhpose / Pose.fwd.hh
SerializedPoseJobOutputter.ccpose / Pose.hh
SerializedPoseJobOutputter.cctypes.hh
SerializedPoseJobOutputter.ccio / util.hh
SerializedPoseJobOutputter.hhpose / Pose.fwd.hh
ShuffleJobDistributor.hhtypes.hh
SilentFileJobInputter.ccpose / extra_pose_info_util.hh
SilentFileJobInputter.ccpose / Pose.hh
SilentFileJobInputter.ccio / silent / SilentFileOptions.hh
SilentFileJobInputter.ccpose / symmetry / util.hh
SilentFileJobInputter.hhpose / Pose.fwd.hh
SilentFileJobInputter.hhio / silent / SilentFileData.hh
SilentFileJobInputter.hhio / silent / SilentStruct.fwd.hh
SilentFileJobOutputter.ccpose / datacache / CacheableDataType.hh
SilentFileJobOutputter.ccpose / Pose.hh
SilentFileJobOutputter.ccio / silent / SilentFileData.hh
SilentFileJobOutputter.ccio / silent / SilentFileOptions.hh
SilentFileJobOutputter.ccio / silent / SilentStructFactory.hh
SilentFileJobOutputter.hhpose / Pose.fwd.hh
SilentFileJobOutputter.hhtypes.hh
SingleFileBuffer.hhtypes.hh
util.ccchemical / ChemicalManager.hh
util.ccimport_pose / import_pose.hh
util.ccpose / Pose.hh
util.ccio / silent / SilentFileData.hh
util.ccio / silent / SilentFileOptions.hh
util.ccio / silent / SilentStruct.hh
util.ccio / silent / SilentStructFactory.hh
util.hhpose / Pose.fwd.hh
util.hhio / silent / SilentStruct.fwd.hh
util.hhtypes.hh
archive / VarianceStatisticsArchive.ccio / silent / SilentStruct.hh
archive / VarianceStatisticsArchive.hhpose / Pose.fwd.hh
archive / VarianceStatisticsArchive.hhtypes.hh
VectorPoseJobDistributor.ccchemical / AA.hh
VectorPoseJobDistributor.ccpose / extra_pose_info_util.hh
VectorPoseJobDistributor.ccpose / Pose.hh
VectorPoseJobDistributor.ccpack / task / ResfileReader.hh
VectorPoseJobDistributor.ccconformation / Residue.hh
VectorPoseJobDistributor.ccscoring / constraints / ResidueTypeConstraint.hh
VectorPoseJobDistributor.ccscoring / ScoreFunction.hh
VectorPoseJobDistributor.ccscoring / ScoreFunctionFactory.hh
VectorPoseJobDistributor.ccpack / task / TaskFactory.hh
VectorPoseJobDistributor.ccpack / task / operation / TaskOperations.hh
VectorPoseJobDistributor.ccpose / util.hh
VectorPoseJobDistributor.hhpose / Pose.fwd.hh
VectorPoseJobDistributor.hhscoring / ScoreFunction.fwd.hh
wwPDBJobOutputter.ccio / pdb / build_pose_as_is.hh
wwPDBJobOutputter.ccpose / datacache / CacheableDataType.hh
wwPDBJobOutputter.ccio / pdb / pdb_writer.hh
wwPDBJobOutputter.ccpose / Pose.hh
wwPDBJobOutputter.cctypes.hh
wwPDBJobOutputter.ccio / util.hh
wwPDBJobOutputter.hhpose / Pose.fwd.hh