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loops → core Relation

File in src/protocols/loopsIncludes file in src/core
loop_closure / ccd / ccd_closure.ccpose / Pose.hh
loop_closure / ccd / ccd_closure.ccconformation / Residue.hh
loop_closure / ccd / ccd_closure.ccchemical / ResidueConnection.hh
loop_closure / ccd / ccd_closure.cckinematics / Stub.hh
loop_closure / ccd / ccd_closure.cctypes.hh
loop_closure / ccd / ccd_closure.hhpose / Pose.fwd.hh
loop_closure / ccd / ccd_closure.hhtypes.hh
loop_closure / ccd / CCDLoopClosureMover.cckinematics / MoveMap.hh
loop_closure / ccd / CCDLoopClosureMover.ccpose / Pose.hh
loop_closure / ccd / CCDLoopClosureMover.ccconformation / Residue.hh
loop_closure / ccd / CCDLoopClosureMover.ccchemical / util.hh
loop_closure / ccd / CCDLoopClosureMover.ccchemical / VariantType.hh
loop_closure / ccd / CCDLoopClosureMover.hhkinematics / MoveMap.fwd.hh
loop_closure / ccd / CCDLoopClosureMover.hhconformation / Residue.fwd.hh
loop_closure / ccd / CCDLoopClosureMover.hhid / TorsionID.fwd.hh
loop_closure / ccd / CCDLoopClosureMover.hhtypes.hh
FoldTreeFromLoopsWrapper.cckinematics / FoldTree.hh
FoldTreeFromLoopsWrapper.ccpose / Pose.hh
loop_mover / IndependentLoopMover.cckinematics / FoldTree.hh
loop_mover / IndependentLoopMover.ccpose / Pose.hh
loop_mover / IndependentLoopMover.ccscoring / ScoreFunction.hh
loop_mover / IndependentLoopMover.hhpose / Pose.fwd.hh
loop_mover / IndependentLoopMover.hhtypes.hh
loop_closure / jacobi / JacobiLoopClosureMover.cckinematics / AtomTree.hh
loop_closure / jacobi / JacobiLoopClosureMover.cckinematics / FoldTree.hh
loop_closure / jacobi / JacobiLoopClosureMover.cckinematics / jacobian / JacobianStructure.hh
loop_closure / jacobi / JacobiLoopClosureMover.cckinematics / jacobian / ModuleType1.hh
loop_closure / jacobi / JacobiLoopClosureMover.cckinematics / MoveMap.hh
loop_closure / jacobi / JacobiLoopClosureMover.ccpose / Pose.hh
loop_closure / jacobi / JacobiLoopClosureMover.ccconformation / Residue.hh
loop_closure / jacobi / JacobiLoopClosureMover.ccchemical / ResidueConnection.hh
loop_closure / jacobi / JacobiLoopClosureMover.cckinematics / jacobian / SeriesJacobians.hh
loop_closure / jacobi / JacobiLoopClosureMover.hhchemical / AtomICoor.hh
loop_closure / jacobi / JacobiLoopClosureMover.hhid / AtomID.hh
loop_closure / jacobi / JacobiLoopClosureMover.hhkinematics / MoveMap.fwd.hh
loop_closure / jacobi / JacobiLoopClosureMover.hhkinematics / RT.fwd.hh
loop_closure / jacobi / JacobiLoopClosureMover.hhkinematics / jacobian / SeriesJacobians.fwd.hh
loop_closure / kinematic_closure / KinematicMover.ccchemical / AtomType.hh
loop_closure / kinematic_closure / KinematicMover.ccconformation / Conformation.hh
loop_closure / kinematic_closure / KinematicMover.ccid / DOF_ID.hh
loop_closure / kinematic_closure / KinematicMover.ccpose / Pose.hh
loop_closure / kinematic_closure / KinematicMover.ccconformation / ppo_torsion_bin.hh
loop_closure / kinematic_closure / KinematicMover.ccscoring / Ramachandran.hh
loop_closure / kinematic_closure / KinematicMover.ccconformation / Residue.hh
loop_closure / kinematic_closure / KinematicMover.ccconformation / ResidueFactory.hh
loop_closure / kinematic_closure / KinematicMover.ccscoring / ScoreFunction.hh
loop_closure / kinematic_closure / KinematicMover.ccscoring / ScoringManager.hh
loop_closure / kinematic_closure / KinematicMover.ccid / TorsionID.hh
loop_closure / kinematic_closure / KinematicMover.ccconformation / util.hh
loop_closure / kinematic_closure / KinematicMover.hhchemical / AA.hh
loop_closure / kinematic_closure / KinematicMover.hhconformation / ppo_torsion_bin.fwd.hh
loop_closure / kinematic_closure / KinematicMover.hhconformation / Residue.fwd.hh
loop_closure / kinematic_closure / KinematicMover.hhscoring / ScoreFunction.fwd.hh
loop_closure / kinematic_closure / KinematicPerturber.ccchemical / AA.hh
loop_closure / kinematic_closure / KinematicPerturber.cckinematics / AtomTree.hh
loop_closure / kinematic_closure / KinematicPerturber.cckinematics / MoveMap.hh
loop_closure / kinematic_closure / KinematicPerturber.ccpose / Pose.hh
loop_closure / kinematic_closure / KinematicPerturber.ccconformation / ppo_torsion_bin.hh
loop_closure / kinematic_closure / KinematicPerturber.ccscoring / Ramachandran.hh
loop_closure / kinematic_closure / KinematicPerturber.ccscoring / Ramachandran2B.hh
loop_closure / kinematic_closure / KinematicPerturber.ccconformation / Residue.hh
loop_closure / kinematic_closure / KinematicPerturber.ccscoring / ScoringManager.hh
loop_closure / kinematic_closure / KinematicPerturber.hhchemical / AA.hh
loop_closure / kinematic_closure / KinematicPerturber.hhkinematics / MoveMap.fwd.hh
loop_closure / kinematic_closure / KinematicPerturber.hhpose / Pose.fwd.hh
loop_closure / kinematic_closure / KinematicPerturber.hhconformation / ppo_torsion_bin.hh
loop_closure / kinematic_closure / KinematicPerturber.hhscoring / Ramachandran.fwd.hh
loop_closure / kinematic_closure / KinematicPerturber.hhscoring / Ramachandran2B.fwd.hh
loop_closure / kinematic_closure / KinematicPerturber.hhtypes.hh
loop_closure / kinematic_closure / KinematicWrapper.cckinematics / MoveMap.hh
loop_closure / kinematic_closure / KinematicWrapper.cctypes.hh
loop_closure / kinematic_closure / KinematicWrapper.hhkinematics / MoveMap.fwd.hh
loop_closure / kinematic_closure / KinematicWrapper.hhpose / Pose.fwd.hh
loop_closure / kinematic_closure / KinematicWrapper.hhtypes.hh
Loop.cckinematics / MoveMap.hh
Loop.ccpose / Pose.hh
Loop.ccconformation / Residue.hh
Loop.fwd.hhtypes.hh
Loop.hhkinematics / MoveMap.fwd.hh
Loop.hhpose / Pose.fwd.hh
Loop.hhid / types.hh
Loop.hhtypes.hh
loop_closure / ccd / LoopClosure.ccfragment / BBTorsionSRFD.hh
loop_closure / ccd / LoopClosure.ccfragment / FragData.hh
loop_closure / ccd / LoopClosure.ccfragment / FragSet.hh
loop_closure / ccd / LoopClosure.ccfragment / Frame.hh
loop_closure / ccd / LoopClosure.cckinematics / MoveMap.hh
loop_closure / ccd / LoopClosure.ccpose / Pose.hh
loop_closure / ccd / LoopClosure.ccscoring / ScoreFunction.hh
loop_closure / ccd / LoopClosure.hhfragment / FragSet.fwd.hh
loop_closure / ccd / LoopClosure.hhfragment / Frame.hh
loop_closure / ccd / LoopClosure.hhkinematics / MoveMap.fwd.hh
loop_closure / ccd / LoopClosure.hhpose / Pose.fwd.hh
loop_closure / ccd / LoopClosure.hhscoring / ScoreFunction.fwd.hh
loop_closure / ccd / LoopClosure.hhtypes.hh
loop_mover / LoopCM.ccenvironment / DofPassport.hh
loop_mover / LoopCM.ccenvironment / LocalPosition.hh
loop_mover / LoopCM.cckinematics / MoveMap.hh
loop_mover / LoopCM.ccselect / residue_selector / ResidueSelector.hh
loop_mover / LoopCM.hhselect / residue_selector / ResidueSelector.hh
loopfinder.ccid / AtomID.hh
loopfinder.ccconformation / Conformation.hh
loopfinder.ccscoring / dssp / Dssp.hh
loopfinder.ccpose / Pose.hh
loopfinder.ccconformation / Residue.hh
loopfinder.hhpose / Pose.fwd.hh
loop_mover / LoopMover.ccpose / datacache / cacheable_observers.hh
loop_mover / LoopMover.ccpose / datacache / CacheableObserverType.hh
loop_mover / LoopMover.ccfragment / FragSet.hh
loop_mover / LoopMover.cckinematics / MoveMap.hh
loop_mover / LoopMover.ccpose / datacache / ObserverCache.hh
loop_mover / LoopMover.ccpose / Pose.hh
loop_mover / LoopMover.ccconformation / ppo_torsion_bin.hh
loop_mover / LoopMover.ccscoring / ScoreFunction.hh
loop_mover / LoopMover.hhfragment / FragSet.fwd.hh
loop_mover / LoopMover.hhkinematics / MoveMap.fwd.hh
loop_mover / LoopMover.hhpose / Pose.fwd.hh
loop_mover / LoopMover.hhconformation / ppo_torsion_bin.fwd.hh
loop_mover / LoopMover.hhscoring / ScoreFunction.fwd.hh
loop_mover / LoopMover.hhtypes.hh
loop_mover / refine / LoopMover_Backrub.ccpack / pack_rotamers.hh
loop_mover / refine / LoopMover_Backrub.ccpack / task / PackerTask.hh
loop_mover / refine / LoopMover_Backrub.ccpose / Pose.hh
loop_mover / refine / LoopMover_Backrub.ccconformation / Residue.hh
loop_mover / refine / LoopMover_Backrub.ccscoring / ScoreFunction.hh
loop_mover / refine / LoopMover_Backrub.ccscoring / ScoreFunctionFactory.hh
loop_mover / refine / LoopMover_Backrub.ccpack / task / TaskFactory.hh
loop_mover / refine / LoopMover_Backrub.ccpack / task / operation / TaskOperations.hh
loop_mover / refine / LoopMover_Backrub.ccid / TorsionID.hh
loop_mover / refine / LoopMover_Backrub.hhkinematics / MoveMap.fwd.hh
loop_mover / refine / LoopMover_Backrub.hhpose / Pose.fwd.hh
loop_mover / refine / LoopMover_Backrub.hhscoring / ScoreFunction.fwd.hh
loop_mover / refine / LoopMover_Backrub.hhpack / task / TaskFactory.hh
loop_mover / refine / LoopMover_Backrub.hhtypes.hh
loop_mover / refine / LoopMover_CCD.ccoptimization / AtomTreeMinimizer.hh
loop_mover / perturb / LoopMover_CCD.ccoptimization / AtomTreeMinimizer.hh
loop_mover / refine / LoopMover_CCD.ccscoring / Energies.hh
loop_mover / perturb / LoopMover_CCD.ccscoring / Energies.hh
loop_mover / refine / LoopMover_CCD.cckinematics / FoldTree.hh
loop_mover / perturb / LoopMover_CCD.cckinematics / FoldTree.hh
loop_mover / perturb / LoopMover_CCD.ccfragment / FragSet.hh
loop_mover / perturb / LoopMover_CCD.ccoptimization / MinimizerOptions.hh
loop_mover / refine / LoopMover_CCD.cckinematics / MoveMap.hh
loop_mover / perturb / LoopMover_CCD.cckinematics / MoveMap.hh
loop_mover / refine / LoopMover_CCD.ccselect / movemap / MoveMapFactory.hh
loop_mover / refine / LoopMover_CCD.ccpack / task / operation / NoRepackDisulfides.hh
loop_mover / refine / LoopMover_CCD.ccpack / pack_rotamers.hh
loop_mover / refine / LoopMover_CCD.ccpack / task / PackerTask.hh
loop_mover / refine / LoopMover_CCD.ccpose / Pose.hh
loop_mover / perturb / LoopMover_CCD.ccpose / Pose.hh
loop_mover / perturb / LoopMover_CCD.ccconformation / Residue.hh
loop_mover / refine / LoopMover_CCD.ccscoring / ScoreFunction.hh
loop_mover / perturb / LoopMover_CCD.ccscoring / ScoreFunction.hh
loop_mover / refine / LoopMover_CCD.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loop_mover / perturb / LoopMover_CCD.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loop_mover / refine / LoopMover_CCD.ccpack / task / TaskFactory.fwd.hh
loop_mover / perturb / LoopMover_CCD.ccpack / task / TaskFactory.fwd.hh
loop_mover / refine / LoopMover_CCD.ccpack / task / TaskFactory.hh
loop_mover / refine / LoopMover_CCD.ccpack / task / operation / TaskOperations.hh
loop_mover / perturb / LoopMover_CCD.ccid / TorsionID.hh
loop_mover / refine / LoopMover_CCD.ccpose / util.hh
loop_mover / refine / LoopMover_CCD.ccpose / symmetry / util.hh
loop_mover / perturb / LoopMover_CCD.ccpose / symmetry / util.hh
loop_mover / perturb / LoopMover_CCD.ccconformation / util.hh
loop_mover / perturb / LoopMover_CCD.ccpose / variant_util.hh
loop_mover / perturb / LoopMover_CCD.ccchemical / VariantType.hh
loop_mover / refine / LoopMover_CCD.hhoptimization / AtomTreeMinimizer.fwd.hh
loop_mover / refine / LoopMover_CCD.hhkinematics / FoldTree.fwd.hh
loop_mover / refine / LoopMover_CCD.hhfragment / FragSet.fwd.hh
loop_mover / perturb / LoopMover_CCD.hhfragment / FragSet.fwd.hh
loop_mover / refine / LoopMover_CCD.hhoptimization / MinimizerOptions.fwd.hh
loop_mover / refine / LoopMover_CCD.hhkinematics / MoveMap.fwd.hh
loop_mover / perturb / LoopMover_CCD.hhkinematics / MoveMap.fwd.hh
loop_mover / refine / LoopMover_CCD.hhselect / movemap / MoveMapFactory.fwd.hh
loop_mover / refine / LoopMover_CCD.hhpack / task / PackerTask.fwd.hh
loop_mover / refine / LoopMover_CCD.hhpose / Pose.fwd.hh
loop_mover / perturb / LoopMover_CCD.hhpose / Pose.fwd.hh
loop_mover / refine / LoopMover_CCD.hhscoring / ScoreFunction.fwd.hh
loop_mover / perturb / LoopMover_CCD.hhscoring / ScoreFunction.fwd.hh
loop_mover / refine / LoopMover_CCD.hhpack / task / TaskFactory.fwd.hh
loop_mover / perturb / LoopMover_CCD.hhpack / task / TaskFactory.fwd.hh
loop_mover / refine / LoopMover_CCD.hhtypes.hh
loop_mover / perturb / LoopMover_CCD.hhtypes.hh
loop_mover / perturb / LoopMover_KIC.ccscoring / Energies.hh
loop_mover / perturb / LoopMover_KIC.cckinematics / FoldTree.hh
loop_mover / refine / LoopMover_KIC.cckinematics / MoveMap.hh
loop_mover / perturb / LoopMover_KIC.cckinematics / MoveMap.hh
loop_mover / refine / LoopMover_KIC.ccpack / pack_rotamers.hh
loop_mover / refine / LoopMover_KIC.ccpack / task / PackerTask.hh
loop_mover / refine / LoopMover_KIC.ccpose / Pose.hh
loop_mover / perturb / LoopMover_KIC.ccpose / Pose.hh
loop_mover / refine / LoopMover_KIC.ccconformation / ppo_torsion_bin.hh
loop_mover / refine / LoopMover_KIC.ccconformation / Residue.hh
loop_mover / perturb / LoopMover_KIC.ccconformation / Residue.hh
loop_mover / refine / LoopMover_KIC.ccpack / rotamer_trials.hh
loop_mover / refine / LoopMover_KIC.ccscoring / ScoreFunction.hh
loop_mover / perturb / LoopMover_KIC.ccscoring / ScoreFunction.hh
loop_mover / refine / LoopMover_KIC.ccpack / task / TaskFactory.hh
loop_mover / refine / LoopMover_KIC.ccpack / task / operation / TaskOperations.hh
loop_mover / refine / LoopMover_KIC.ccid / TorsionID.hh
loop_mover / perturb / LoopMover_KIC.ccid / TorsionID.hh
loop_mover / refine / LoopMover_KIC.ccpose / symmetry / util.hh
loop_mover / perturb / LoopMover_KIC.ccpose / symmetry / util.hh
loop_mover / refine / LoopMover_KIC.ccpose / variant_util.hh
loop_mover / perturb / LoopMover_KIC.ccpose / variant_util.hh
loop_mover / refine / LoopMover_KIC.ccchemical / VariantType.hh
loop_mover / perturb / LoopMover_KIC.ccchemical / VariantType.hh
loop_mover / refine / LoopMover_KIC.hhkinematics / MoveMap.fwd.hh
loop_mover / perturb / LoopMover_KIC.hhkinematics / MoveMap.fwd.hh
loop_mover / refine / LoopMover_KIC.hhpack / task / PackerTask.fwd.hh
loop_mover / perturb / LoopMover_KIC.hhpack / task / PackerTask.fwd.hh
loop_mover / refine / LoopMover_KIC.hhpose / Pose.fwd.hh
loop_mover / perturb / LoopMover_KIC.hhpose / Pose.fwd.hh
loop_mover / refine / LoopMover_KIC.hhscoring / ScoreFunction.fwd.hh
loop_mover / perturb / LoopMover_KIC.hhscoring / ScoreFunction.fwd.hh
loop_mover / refine / LoopMover_KIC.hhpack / task / TaskFactory.fwd.hh
loop_mover / perturb / LoopMover_KIC.hhpack / task / TaskFactory.fwd.hh
loop_mover / refine / LoopMover_KIC.hhtypes.hh
loop_mover / perturb / LoopMover_KIC.hhtypes.hh
loop_mover / perturb / LoopMover_QuickCCD.ccoptimization / AtomTreeMinimizer.hh
loop_mover / perturb / LoopMover_QuickCCD.ccscoring / constraints / ConstraintSet.hh
loop_mover / perturb / LoopMover_QuickCCD.ccscoring / Energies.hh
loop_mover / perturb / LoopMover_QuickCCD.cckinematics / FoldTree.hh
loop_mover / perturb / LoopMover_QuickCCD.ccfragment / FragSet.hh
loop_mover / perturb / LoopMover_QuickCCD.ccoptimization / MinimizerOptions.hh
loop_mover / perturb / LoopMover_QuickCCD.cckinematics / MoveMap.hh
loop_mover / perturb / LoopMover_QuickCCD.ccpose / Pose.hh
loop_mover / perturb / LoopMover_QuickCCD.ccconformation / Residue.hh
loop_mover / perturb / LoopMover_QuickCCD.ccscoring / ScoreFunction.hh
loop_mover / perturb / LoopMover_QuickCCD.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loop_mover / perturb / LoopMover_QuickCCD.ccconformation / symmetry / SymmetricConformation.hh
loop_mover / perturb / LoopMover_QuickCCD.ccconformation / symmetry / SymmetryInfo.hh
loop_mover / perturb / LoopMover_QuickCCD.ccid / TorsionID.hh
loop_mover / perturb / LoopMover_QuickCCD.ccpose / symmetry / util.hh
loop_mover / perturb / LoopMover_QuickCCD.ccpose / variant_util.hh
loop_mover / perturb / LoopMover_QuickCCD.ccchemical / VariantType.hh
loop_mover / perturb / LoopMover_QuickCCD.hhfragment / FragSet.fwd.hh
loop_mover / perturb / LoopMover_QuickCCD.hhkinematics / MoveMap.fwd.hh
loop_mover / perturb / LoopMover_QuickCCD.hhpose / Pose.fwd.hh
loop_mover / perturb / LoopMover_QuickCCD.hhscoring / ScoreFunction.fwd.hh
loop_mover / perturb / LoopMover_QuickCCD.hhtypes.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccoptimization / AtomTreeMinimizer.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccconformation / Conformation.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccscoring / constraints / ConstraintSet.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccscoring / Energies.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.cckinematics / FoldTree.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccfragment / FragSet.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccoptimization / MinimizerOptions.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.cckinematics / MoveMap.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccpose / Pose.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccconformation / Residue.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccscoring / ScoreFunction.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccconformation / symmetry / SymmetricConformation.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccconformation / symmetry / SymmetryInfo.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccid / TorsionID.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccpose / symmetry / util.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccpose / variant_util.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.ccchemical / VariantType.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.hhkinematics / MoveMap.fwd.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.hhpose / Pose.fwd.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.hhscoring / ScoreFunction.fwd.hh
loop_mover / perturb / LoopMover_QuickCCD_Moves.hhtypes.hh
loop_mover / perturb / LoopMover_QuickCCD_MovesCreator.hhtypes.hh
LoopMoverFactory.hhpose / Pose.fwd.hh
loop_mover / refine / LoopRefineInnerCycle.cckinematics / MoveMap.hh
loop_mover / refine / LoopRefineInnerCycle.ccpose / Pose.hh
loop_mover / refine / LoopRefineInnerCycle.ccscoring / ScoreFunction.hh
loop_mover / refine / LoopRefineInnerCycle.ccpack / task / TaskFactory.hh
loop_mover / refine / LoopRefineInnerCycle.hhkinematics / MoveMap.fwd.hh
loop_mover / refine / LoopRefineInnerCycle.hhscoring / ScoreFunction.fwd.hh
loop_mover / refine / LoopRefineInnerCycle.hhpack / task / TaskFactory.fwd.hh
loop_mover / refine / LoopRefineInnerCycleContainer.ccpose / Pose.hh
loop_mover / refine / LoopRefineInnerCycleContainer.ccscoring / ScoreFunction.hh
loop_mover / refine / LoopRefineInnerCycleContainer.ccpack / task / TaskFactory.hh
loop_mover / refine / LoopRefineInnerCycleFactory.ccscoring / ScoreFunction.hh
loop_mover / refine / LoopRefineInnerCycleFactory.ccpack / task / TaskFactory.hh
loop_mover / refine / LoopRefineInnerCycleFactory.hhscoring / ScoreFunction.fwd.hh
loop_mover / refine / LoopRefineInnerCycleFactory.hhpack / task / TaskFactory.fwd.hh
looprelax_protocols.ccid / AtomID.hh
looprelax_protocols.ccoptimization / AtomTreeMinimizer.hh
looprelax_protocols.ccconformation / Conformation.hh
looprelax_protocols.ccscoring / constraints / ConstraintSet.hh
looprelax_protocols.ccscoring / constraints / CoordinateConstraint.hh
looprelax_protocols.ccscoring / Energies.fwd.hh
looprelax_protocols.ccscoring / Energies.hh
looprelax_protocols.ccscoring / EnergyMap.hh
looprelax_protocols.cckinematics / FoldTree.hh
looprelax_protocols.ccfragment / FragSet.hh
looprelax_protocols.ccscoring / func / Func.hh
looprelax_protocols.ccscoring / func / HarmonicFunc.hh
looprelax_protocols.ccoptimization / MinimizerOptions.hh
looprelax_protocols.cckinematics / MoveMap.fwd.hh
looprelax_protocols.cckinematics / MoveMap.hh
looprelax_protocols.ccpack / task / PackerTask.hh
looprelax_protocols.ccpose / Pose.hh
looprelax_protocols.ccchemical / ResidueType.hh
looprelax_protocols.ccscoring / ScoreFunction.hh
looprelax_protocols.ccpack / task / TaskFactory.hh
looprelax_protocols.cctypes.hh
looprelax_protocols.ccpose / variant_util.hh
looprelax_protocols.ccchemical / VariantType.hh
looprelax_protocols.hhfragment / FragSet.fwd.hh
looprelax_protocols.hhpose / Pose.fwd.hh
looprelax_protocols.hhscoring / ScoreFunction.fwd.hh
looprelax_protocols.hhtypes.hh
Loops.cckinematics / FoldTree.hh
Loops.ccid / NamedAtomID.hh
Loops.ccpose / Pose.hh
Loops.cctypes.hh
Loops.hhkinematics / MoveMap.fwd.hh
Loops.hhpose / Pose.fwd.hh
Loops.hhid / types.hh
Loops.hhtypes.hh
loops_main.ccfragment / BBTorsionSRFD.hh
loops_main.ccconformation / Conformation.hh
loops_main.ccfragment / ConstantLengthFragSet.hh
loops_main.ccscoring / constraints / ConstraintSet.hh
loops_main.ccscoring / Energies.hh
loops_main.ccpose / extra_pose_info_util.hh
loops_main.cckinematics / FoldTree.hh
loops_main.ccfragment / FragData.hh
loops_main.ccfragment / FragmentIO.hh
loops_main.ccimport_pose / import_pose.hh
loops_main.cckinematics / MoveMap.hh
loops_main.ccpose / Pose.hh
loops_main.ccconformation / ResidueFactory.hh
loops_main.ccchemical / ResidueTypeSet.hh
loops_main.ccscoring / rms_util.hh
loops_main.ccid / SequenceMapping.hh
loops_main.ccscoring / TenANeighborGraph.hh
loops_main.ccid / TorsionID.hh
loops_main.cctypes.hh
loops_main.ccselect / util.hh
loops_main.ccpose / symmetry / util.hh
loops_main.ccfragment / util.hh
loops_main.ccconformation / util.hh
loops_main.ccconformation / symmetry / util.hh
loops_main.ccpose / util.tmpl.hh
loops_main.ccpose / variant_util.hh
loops_main.ccchemical / VariantType.hh
loops_main.hhkinematics / FoldTree.fwd.hh
loops_main.hhfragment / FragSet.fwd.hh
loops_main.hhkinematics / MoveMap.fwd.hh
loops_main.hhpose / Pose.fwd.hh
loops_main.hhid / SequenceMapping.fwd.hh
loops_main.hhtypes.hh
loops_definers / LoopsDatabaseDefiner.hhpose / Pose.fwd.hh
loops_definers / LoopsDatabaseDefinerCreator.hhtypes.hh
loops_definers / LoopsDefiner.hhpose / Pose.fwd.hh
loops_definers / LoopsDefinerCreator.hhtypes.hh
loops_definers / LoopsDefinerFactory.hhpose / Pose.fwd.hh
loops_definers / LoopsDefinerLoader.ccpose / Pose.hh
loops_definers / LoopsExplicitDefiner.ccpose / Pose.hh
loops_definers / LoopsExplicitDefiner.hhpose / Pose.fwd.hh
loops_definers / LoopsExplicitDefinerCreator.hhtypes.hh
loops_definers / LoopsFileDefiner.hhpose / Pose.fwd.hh
loops_definers / LoopsFileDefinerCreator.hhtypes.hh
LoopsFileFallbackConfiguration.cctypes.hh
LoopsFileIO.ccpose / PDBInfo.hh
LoopsFileIO.ccpose / Pose.hh
LoopsFileIO.hhpose / Pose.fwd.hh
LoopsFileIO.hhpose / ResidueIndexDescription.hh
loops_definers / LoopsStringDefiner.ccpose / Pose.hh
loops_definers / LoopsStringDefiner.hhpose / Pose.fwd.hh
loops_definers / LoopsStringDefinerCreator.hhtypes.hh
make_loops.ccchemical / AA.hh
make_loops.ccconformation / Conformation.hh
make_loops.ccpose / PDBInfo.hh
make_loops.ccpose / Pose.hh
make_loops.hhpose / Pose.fwd.hh
make_loops.hhtypes.hh
loop_closure / ccd / RamaCheck.ccpose / Pose.hh
loop_closure / ccd / RamaCheck.ccscoring / Ramachandran.hh
loop_closure / ccd / RamaCheck.ccscoring / Ramachandran2B.hh
loop_closure / ccd / RamaCheck.ccconformation / Residue.hh
loop_closure / ccd / RamaCheck.ccscoring / ScoringManager.hh
loop_closure / ccd / RamaCheck.ccid / TorsionID.hh
loop_closure / ccd / RamaCheck.hhpose / Pose.fwd.hh
loop_closure / ccd / RamaCheck.hhscoring / Ramachandran.fwd.hh
loop_closure / ccd / RamaCheck.hhscoring / Ramachandran2B.fwd.hh
loop_closure / ccd / RamaCheck.hhid / TorsionID.fwd.hh
loop_closure / ccd / RamaCheck.hhtypes.hh
loop_mover / refine / RepackTrial.ccpack / pack_rotamers.hh
loop_mover / refine / RepackTrial.ccpack / task / PackerTask.hh
loop_mover / refine / RepackTrial.ccscoring / ScoreFunction.hh
loop_mover / refine / RepackTrial.ccpack / task / TaskFactory.hh
loop_mover / refine / RepackTrial.hhoptimization / AtomTreeMinimizer.fwd.hh
loop_mover / refine / RepackTrial.hhpack / task / PackerTask.fwd.hh
loop_mover / refine / ShearMinCCDTrial.ccoptimization / AtomTreeMinimizer.hh
loop_mover / refine / ShearMinCCDTrial.ccoptimization / Minimizer.hh
loop_mover / refine / ShearMinCCDTrial.cckinematics / MoveMap.hh
loop_mover / refine / ShearMinCCDTrial.ccpose / Pose.hh
loop_mover / refine / ShearMinCCDTrial.ccpack / rotamer_trials.hh
loop_mover / refine / ShearMinCCDTrial.ccscoring / ScoreFunction.hh
loop_mover / refine / ShearMinCCDTrial.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loop_mover / refine / ShearMinCCDTrial.ccpack / task / TaskFactory.hh
loop_mover / refine / ShearMinCCDTrial.ccpose / symmetry / util.hh
loop_mover / refine / ShearMinCCDTrial.hhoptimization / AtomTreeMinimizer.fwd.hh
loop_mover / refine / ShearMinCCDTrial.hhoptimization / MinimizerOptions.fwd.hh
loop_closure / ccd / ShortLoopClosure.ccpose / annotated_sequence.hh
loop_closure / ccd / ShortLoopClosure.ccchemical / ChemicalManager.hh
loop_closure / ccd / ShortLoopClosure.cckinematics / FoldTree.hh
loop_closure / ccd / ShortLoopClosure.ccfragment / FragSet.hh
loop_closure / ccd / ShortLoopClosure.ccfragment / Frame.hh
loop_closure / ccd / ShortLoopClosure.ccfragment / FrameList.hh
loop_closure / ccd / ShortLoopClosure.cckinematics / MoveMap.hh
loop_closure / ccd / ShortLoopClosure.ccpose / Pose.hh
loop_closure / ccd / ShortLoopClosure.ccscoring / ScoreFunction.hh
loop_closure / ccd / ShortLoopClosure.ccscoring / ScoreType.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / BBTorsionSRFD.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccscoring / Energies.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccpose / extra_pose_info_util.hh
loop_closure / ccd / SlidingWindowLoopClosure.cckinematics / FoldTree.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FragCache.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FragData.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FragSet.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / Frame.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FrameIterator.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FrameIteratorWorker_.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / FrameList.hh
loop_closure / ccd / SlidingWindowLoopClosure.cckinematics / MoveMap.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccpose / Pose.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccscoring / rms_util.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccscoring / ScoreFunction.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccscoring / ScoreFunctionFactory.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccfragment / SecondaryStructure.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccio / silent / SilentFileData.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccio / silent / SilentFileOptions.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccio / silent / SilentStruct.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccio / silent / SilentStructFactory.hh
loop_closure / ccd / SlidingWindowLoopClosure.ccpose / util.hh
loop_closure / ccd / SlidingWindowLoopClosure.hhfragment / FragID.hh
loop_closure / ccd / SlidingWindowLoopClosure.hhfragment / FragSet.fwd.hh
loop_closure / ccd / SlidingWindowLoopClosure.hhkinematics / MoveMap.fwd.hh
loop_closure / ccd / SlidingWindowLoopClosure.hhfragment / OrderedFragSet.hh
loop_closure / ccd / SlidingWindowLoopClosure.hhpose / Pose.fwd.hh
loop_closure / ccd / SlidingWindowLoopClosure.hhscoring / ScoreFunction.hh
loop_closure / ccd / SlidingWindowLoopClosure.hhfragment / SecondaryStructure.hh
loop_closure / ccd / SlidingWindowLoopClosure.hhtypes.hh
loop_mover / refine / SmallMinCCDTrial.ccoptimization / AtomTreeMinimizer.hh
loop_mover / refine / SmallMinCCDTrial.ccscoring / Energies.hh
loop_mover / refine / SmallMinCCDTrial.ccoptimization / MinimizerOptions.hh
loop_mover / refine / SmallMinCCDTrial.cckinematics / MoveMap.hh
loop_mover / refine / SmallMinCCDTrial.ccpack / task / PackerTask.hh
loop_mover / refine / SmallMinCCDTrial.ccpose / Pose.hh
loop_mover / refine / SmallMinCCDTrial.ccpack / rotamer_trials.hh
loop_mover / refine / SmallMinCCDTrial.ccscoring / ScoreFunction.hh
loop_mover / refine / SmallMinCCDTrial.ccoptimization / symmetry / SymAtomTreeMinimizer.hh
loop_mover / refine / SmallMinCCDTrial.ccpack / task / TaskFactory.hh
loop_mover / refine / SmallMinCCDTrial.ccpose / symmetry / util.hh
loop_mover / refine / SmallMinCCDTrial.hhoptimization / AtomTreeMinimizer.fwd.hh
loop_mover / refine / SmallMinCCDTrial.hhoptimization / MinimizerOptions.fwd.hh
loop_mover / refine / SmallMinCCDTrial.hhpack / task / PackerTask.fwd.hh
util.ccid / AtomID.hh
util.ccid / AtomID_Map.hh
util.ccscoring / constraints / CoordinateConstraint.hh
util.ccpose / extra_pose_info_util.hh
util.cckinematics / FoldTree.hh
util.ccfragment / FragSet.hh
util.ccfragment / Frame.hh
util.ccfragment / FrameList.hh
util.ccscoring / func / HarmonicFunc.hh
util.cckinematics / MoveMap.hh
util.ccpose / PDBInfo.hh
loops_definers / util.ccpose / Pose.hh
util.ccpose / Pose.hh
util.ccconformation / Residue.hh
util.ccconformation / ResidueFactory.hh
util.ccchemical / ResidueType.hh
util.ccchemical / ResidueTypeSet.hh
util.ccscoring / rms_util.hh
util.ccscoring / ScoreFunction.hh
util.ccscoring / ScoreFunctionFactory.hh
util.ccfragment / SecondaryStructure.hh
util.ccpose / selection.hh
util.ccconformation / symmetry / SymmetricConformation.hh
util.ccconformation / symmetry / SymmetryInfo.hh
util.ccpose / util.hh
util.ccconformation / util.hh
util.ccpose / symmetry / util.hh
util.ccpose / util.tmpl.hh
util.hhfragment / FragSet.fwd.hh
loops_definers / util.hhpose / Pose.fwd.hh
util.hhpose / Pose.fwd.hh
util.hhscoring / ScoreFunction.fwd.hh
util.hhfragment / SecondaryStructure.fwd.hh
util.hhtypes.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / BBTorsionSRFD.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.cckinematics / FoldTree.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / FragData.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / FragSet.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / Frame.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccfragment / FrameList.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.cckinematics / MoveMap.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccpose / Pose.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.ccscoring / ScoreFunction.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhfragment / FragSet.fwd.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhkinematics / MoveMap.fwd.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhfragment / OrderedFragSet.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhpose / Pose.fwd.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhscoring / ScoreFunction.fwd.hh
loop_closure / ccd / WidthFirstSlidingWindowLoopClosure.hhtypes.hh