denovo → core Relation

File in src/protocols/rna/denovo	Includes file in src/core
coarse / CoarseRNA_Fragments.cc	id / AtomID.hh
coarse / CoarseRNA_Fragments.cc	pose / toolbox / AtomID_Mapper.hh
coarse / CoarseRNA_Fragments.cc	pose / toolbox / AtomLevelDomainMap.hh
coarse / CoarseRNA_Fragments.cc	chemical / ChemicalManager.hh
coarse / CoarseRNA_Fragments.cc	kinematics / FoldTree.hh
coarse / CoarseRNA_Fragments.cc	import_pose / import_pose.hh
coarse / CoarseRNA_Fragments.cc	pose / MiniPose.hh
coarse / CoarseRNA_Fragments.cc	pose / Pose.hh
coarse / CoarseRNA_Fragments.cc	conformation / Residue.hh
coarse / CoarseRNA_Fragments.cc	chemical / ResidueTypeSet.hh
coarse / CoarseRNA_Fragments.cc	fragment / rna / RNA_FragmentHomologyExclusion.hh
coarse / CoarseRNA_Fragments.cc	pose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
coarse / CoarseRNA_Fragments.cc	types.hh
coarse / CoarseRNA_Fragments.cc	pose / copydofs / util.hh
coarse / CoarseRNA_Fragments.cc	pose / rna / util.hh
coarse / CoarseRNA_Fragments.cc	pose / util.hh
coarse / CoarseRNA_Fragments.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
coarse / CoarseRNA_Fragments.hh	pose / MiniPose.hh
coarse / CoarseRNA_Fragments.hh	pose / Pose.fwd.hh
coarse / CoarseRNA_Fragments.hh	fragment / rna / RNA_FragmentHomologyExclusion.fwd.hh
coarse / CoarseRNA_Fragments.hh	fragment / rna / RNA_Fragments.hh
coarse / CoarseRNA_Fragments.hh	fragment / rna / TorsionSet.fwd.hh
coarse / CoarseRNA_Fragments.hh	types.hh
coarse / CoarseRNA_LoopCloser.cc	kinematics / tree / Atom.hh
coarse / CoarseRNA_LoopCloser.cc	id / AtomID.hh
coarse / CoarseRNA_LoopCloser.cc	pose / toolbox / AtomLevelDomainMap.hh
coarse / CoarseRNA_LoopCloser.cc	kinematics / AtomTree.hh
coarse / CoarseRNA_LoopCloser.cc	id / DOF_ID.hh
coarse / CoarseRNA_LoopCloser.cc	kinematics / FoldTree.hh
coarse / CoarseRNA_LoopCloser.cc	id / NamedAtomID.hh
coarse / CoarseRNA_LoopCloser.cc	pose / Pose.hh
coarse / CoarseRNA_LoopCloser.cc	chemical / ResidueType.hh
coarse / CoarseRNA_LoopCloser.cc	scoring / ScoreFunction.hh
coarse / CoarseRNA_LoopCloser.cc	id / TorsionID.hh
coarse / CoarseRNA_LoopCloser.cc	types.hh
coarse / CoarseRNA_LoopCloser.cc	pose / util.hh
coarse / CoarseRNA_LoopCloser.cc	chemical / VariantType.hh
coarse / CoarseRNA_LoopCloser.hh	kinematics / tree / Atom.fwd.hh
coarse / CoarseRNA_LoopCloser.hh	pose / toolbox / AtomLevelDomainMap.hh
coarse / CoarseRNA_LoopCloser.hh	id / DOF_ID.hh
coarse / CoarseRNA_LoopCloser.hh	id / NamedAtomID.hh
coarse / CoarseRNA_LoopCloser.hh	pose / Pose.fwd.hh
coarse / CoarseRNA_LoopCloser.hh	scoring / ScoreFunction.hh
coarse / CoarseRNA_LoopCloser.hh	types.hh
coarse / MultipleDomainMover.cc	id / AtomID.hh
coarse / MultipleDomainMover.cc	pose / toolbox / AtomID_Mapper.hh
coarse / MultipleDomainMover.cc	pose / toolbox / AtomLevelDomainMap.hh
coarse / MultipleDomainMover.cc	conformation / Conformation.hh
coarse / MultipleDomainMover.cc	kinematics / FoldTree.hh
coarse / MultipleDomainMover.cc	kinematics / Jump.hh
coarse / MultipleDomainMover.cc	id / NamedAtomID.hh
coarse / MultipleDomainMover.cc	pose / Pose.hh
coarse / MultipleDomainMover.cc	conformation / Residue.hh
coarse / MultipleDomainMover.cc	kinematics / Stub.hh
coarse / MultipleDomainMover.cc	types.hh
coarse / MultipleDomainMover.hh	pose / toolbox / AtomLevelDomainMap.hh
coarse / MultipleDomainMover.hh	pose / Pose.fwd.hh
coarse / MultipleDomainMover.hh	types.hh
movers / RNA_DeNovoMasterMover.cc	pose / toolbox / AtomLevelDomainMap.hh
movers / RNA_DeNovoMasterMover.cc	scoring / Energies.hh
movers / RNA_DeNovoMasterMover.cc	fragment / rna / FullAtomRNA_Fragments.hh
movers / RNA_DeNovoMasterMover.cc	kinematics / MoveMap.hh
movers / RNA_DeNovoMasterMover.cc	pose / Pose.hh
movers / RNA_DeNovoMasterMover.cc	conformation / Residue.hh
movers / RNA_DeNovoMasterMover.cc	import_pose / RNA_BasePairHandler.hh
movers / RNA_DeNovoMasterMover.cc	import_pose / libraries / RNA_ChunkLibrary.hh
movers / RNA_DeNovoMasterMover.cc	import_pose / options / RNA_FragmentMonteCarloOptions.hh
movers / RNA_DeNovoMasterMover.cc	fragment / rna / RNA_Fragments.hh
movers / RNA_DeNovoMasterMover.cc	import_pose / libraries / RNA_JumpLibrary.hh
movers / RNA_DeNovoMasterMover.cc	import_pose / RNA_JumpMover.hh
movers / RNA_DeNovoMasterMover.cc	import_pose / libraries / RNA_LibraryManager.hh
movers / RNA_DeNovoMasterMover.cc	scoring / ScoreFunction.hh
movers / RNA_DeNovoMasterMover.cc	scoring / ScoreFunctionFactory.hh
movers / RNA_DeNovoMasterMover.cc	pose / rna / util.hh
movers / RNA_DeNovoMasterMover.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
movers / RNA_DeNovoMasterMover.hh	kinematics / FoldTree.hh
movers / RNA_DeNovoMasterMover.hh	pose / Pose.fwd.hh
movers / RNA_DeNovoMasterMover.hh	import_pose / RNA_BasePairHandler.fwd.hh
movers / RNA_DeNovoMasterMover.hh	import_pose / libraries / RNA_ChunkLibrary.fwd.hh
movers / RNA_DeNovoMasterMover.hh	import_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
movers / RNA_DeNovoMasterMover.hh	fragment / rna / RNA_Fragments.fwd.hh
movers / RNA_DeNovoMasterMover.hh	import_pose / RNA_JumpMover.fwd.hh
movers / RNA_DeNovoMasterMover.hh	scoring / ScoreFunction.fwd.hh
movers / RNA_DeNovoMasterMover.hh	types.hh
RNA_DeNovoPoseInitializer.cc	pose / annotated_sequence.hh
RNA_DeNovoPoseInitializer.cc	kinematics / tree / Atom.hh
RNA_DeNovoPoseInitializer.cc	id / AtomID.hh
RNA_DeNovoPoseInitializer.cc	pose / toolbox / AtomLevelDomainMap.hh
RNA_DeNovoPoseInitializer.cc	kinematics / AtomTree.hh
RNA_DeNovoPoseInitializer.cc	chemical / ChemicalManager.hh
RNA_DeNovoPoseInitializer.cc	import_pose / libraries / ChunkSet.hh
RNA_DeNovoPoseInitializer.cc	kinematics / FoldTree.hh
RNA_DeNovoPoseInitializer.cc	pose / full_model_info / FullModelInfo.hh
RNA_DeNovoPoseInitializer.cc	pose / full_model_info / FullModelParameters.hh
RNA_DeNovoPoseInitializer.cc	import_pose / import_pose.hh
RNA_DeNovoPoseInitializer.cc	pose / MiniPose.hh
RNA_DeNovoPoseInitializer.cc	id / NamedAtomID.hh
RNA_DeNovoPoseInitializer.cc	pose / PDBInfo.hh
RNA_DeNovoPoseInitializer.cc	pose / Pose.hh
RNA_DeNovoPoseInitializer.cc	conformation / Residue.hh
RNA_DeNovoPoseInitializer.cc	conformation / ResidueFactory.hh
RNA_DeNovoPoseInitializer.cc	chemical / ResidueProperties.hh
RNA_DeNovoPoseInitializer.cc	chemical / ResidueTypeSet.hh
RNA_DeNovoPoseInitializer.cc	import_pose / RNA_BasePairHandler.hh
RNA_DeNovoPoseInitializer.cc	import_pose / libraries / RNA_ChunkLibrary.hh
RNA_DeNovoPoseInitializer.cc	import_pose / RNA_DeNovoParameters.hh
RNA_DeNovoPoseInitializer.cc	import_pose / RNA_JumpMover.hh
RNA_DeNovoPoseInitializer.cc	import_pose / libraries / RNA_LibraryManager.hh
RNA_DeNovoPoseInitializer.cc	scoring / rna / RNA_LowResolutionPotential.hh
RNA_DeNovoPoseInitializer.cc	scoring / rna / RNA_ScoringInfo.hh
RNA_DeNovoPoseInitializer.cc	pose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
RNA_DeNovoPoseInitializer.cc	scoring / ScoreType.hh
RNA_DeNovoPoseInitializer.cc	id / TorsionID.hh
RNA_DeNovoPoseInitializer.cc	types.hh
RNA_DeNovoPoseInitializer.cc	chemical / rna / util.hh
RNA_DeNovoPoseInitializer.cc	pose / full_model_info / util.hh
RNA_DeNovoPoseInitializer.cc	pose / rna / util.hh
RNA_DeNovoPoseInitializer.cc	pose / copydofs / util.hh
RNA_DeNovoPoseInitializer.cc	pose / variant_util.hh
RNA_DeNovoPoseInitializer.cc	chemical / VariantType.hh
RNA_DeNovoPoseInitializer.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
RNA_DeNovoPoseInitializer.hh	pose / rna / BasePairStep.hh
RNA_DeNovoPoseInitializer.hh	kinematics / FoldTree.fwd.hh
RNA_DeNovoPoseInitializer.hh	pose / Pose.fwd.hh
RNA_DeNovoPoseInitializer.hh	import_pose / libraries / RNA_ChunkLibrary.fwd.hh
RNA_DeNovoPoseInitializer.hh	import_pose / RNA_DeNovoParameters.hh
RNA_DeNovoPoseInitializer.hh	import_pose / RNA_JumpMover.fwd.hh
RNA_DeNovoPoseInitializer.hh	types.hh
RNA_DeNovoProtocol.cc	id / AtomID.hh
RNA_DeNovoProtocol.cc	id / AtomID_Map.hh
RNA_DeNovoProtocol.cc	io / silent / BinarySilentStruct.hh
RNA_DeNovoProtocol.cc	scoring / constraints / ConstraintSet.hh
RNA_DeNovoProtocol.cc	id / DOF_ID.hh
RNA_DeNovoProtocol.cc	scoring / Energies.hh
RNA_DeNovoProtocol.cc	scoring / EnergyMap.hh
RNA_DeNovoProtocol.cc	pose / extra_pose_info_util.hh
RNA_DeNovoProtocol.cc	fragment / rna / FullAtomRNA_Fragments.hh
RNA_DeNovoProtocol.cc	kinematics / MoveMap.hh
RNA_DeNovoProtocol.cc	io / pdb / pdb_writer.hh
RNA_DeNovoProtocol.cc	pose / Pose.hh
RNA_DeNovoProtocol.cc	conformation / Residue.hh
RNA_DeNovoProtocol.cc	scoring / rms_util.hh
RNA_DeNovoProtocol.cc	pose / rna / RNA_BaseDoubletClasses.hh
RNA_DeNovoProtocol.cc	pose / rna / RNA_BasePairClassifier.hh
RNA_DeNovoProtocol.cc	import_pose / RNA_BasePairHandler.hh
RNA_DeNovoProtocol.cc	scoring / rna / chemical_shift / RNA_ChemicalShiftPotential.hh
RNA_DeNovoProtocol.cc	import_pose / libraries / RNA_ChunkLibrary.hh
RNA_DeNovoProtocol.cc	import_pose / RNA_DeNovoParameters.hh
RNA_DeNovoProtocol.cc	import_pose / options / RNA_DeNovoProtocolOptions.hh
RNA_DeNovoProtocol.cc	scoring / rna / RNA_ScoringInfo.hh
RNA_DeNovoProtocol.cc	io / silent / RNA_SilentStruct.hh
RNA_DeNovoProtocol.cc	io / silent / ScoreFileSilentStruct.hh
RNA_DeNovoProtocol.cc	scoring / ScoreFunction.hh
RNA_DeNovoProtocol.cc	scoring / ScoreFunctionFactory.hh
RNA_DeNovoProtocol.cc	scoring / ScoreType.hh
RNA_DeNovoProtocol.cc	scoring / ScoringManager.hh
RNA_DeNovoProtocol.cc	io / silent / SilentFileData.hh
RNA_DeNovoProtocol.cc	io / silent / SilentFileOptions.hh
RNA_DeNovoProtocol.cc	util / SwitchResidueTypeSet.hh
RNA_DeNovoProtocol.cc	types.hh
RNA_DeNovoProtocol.cc	io / silent / util.hh
RNA_DeNovoProtocol.cc	pose / rna / util.hh
RNA_DeNovoProtocol.cc	chemical / rna / util.hh
RNA_DeNovoProtocol.hh	id / AtomID.fwd.hh
RNA_DeNovoProtocol.hh	pose / Pose.fwd.hh
RNA_DeNovoProtocol.hh	import_pose / options / RNA_DeNovoProtocolOptions.fwd.hh
RNA_DeNovoProtocol.hh	scoring / ScoreFunction.fwd.hh
RNA_DeNovoProtocol.hh	io / silent / silent.fwd.hh
RNA_DeNovoProtocol.hh	types.hh
movers / RNA_DeNovoProtocolMover.cc	pose / annotated_sequence.hh
movers / RNA_DeNovoProtocolMover.cc	id / AtomID.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / constraints / AtomPairConstraint.hh
movers / RNA_DeNovoProtocolMover.cc	pose / datacache / CacheableDataType.hh
movers / RNA_DeNovoProtocolMover.cc	chemical / ChemicalManager.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / constraints / ConstraintIO.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / constraints / ConstraintSet.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / Energies.hh
movers / RNA_DeNovoProtocolMover.cc	pose / extra_pose_info_util.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / func / FadeFunc.hh
movers / RNA_DeNovoProtocolMover.cc	pose / full_model_info / FullModelInfo.hh
movers / RNA_DeNovoProtocolMover.cc	pose / full_model_info / FullModelParameters.hh
movers / RNA_DeNovoProtocolMover.cc	import_pose / import_pose.hh
movers / RNA_DeNovoProtocolMover.cc	pose / rna / leontis_westhof_util.hh
movers / RNA_DeNovoProtocolMover.cc	id / NamedAtomID.hh
movers / RNA_DeNovoProtocolMover.cc	pose / PDBInfo.hh
movers / RNA_DeNovoProtocolMover.cc	pose / Pose.hh
movers / RNA_DeNovoProtocolMover.cc	chemical / ResidueType.hh
movers / RNA_DeNovoProtocolMover.cc	chemical / ResidueTypeSet.hh
movers / RNA_DeNovoProtocolMover.cc	pose / rna / RNA_BasePairClassifier.hh
movers / RNA_DeNovoProtocolMover.cc	import_pose / RNA_BasePairHandler.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / rna / chemical_shift / RNA_ChemicalShiftPotential.hh
movers / RNA_DeNovoProtocolMover.cc	import_pose / libraries / RNA_ChunkLibrary.hh
movers / RNA_DeNovoProtocolMover.cc	io / rna / RNA_DataReader.hh
movers / RNA_DeNovoProtocolMover.cc	import_pose / RNA_DeNovoParameters.hh
movers / RNA_DeNovoProtocolMover.cc	import_pose / options / RNA_DeNovoProtocolOptions.hh
movers / RNA_DeNovoProtocolMover.cc	import_pose / RNA_HelixAssembler.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / rna / RNA_ScoringInfo.hh
movers / RNA_DeNovoProtocolMover.cc	pose / rna / RNA_SecStruct.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / ScoreFunction.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / ScoreFunctionFactory.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / ScoringManager.hh
movers / RNA_DeNovoProtocolMover.cc	id / SequenceMapping.hh
movers / RNA_DeNovoProtocolMover.cc	import_pose / pose_stream / SilentFilePoseInputStream.hh
movers / RNA_DeNovoProtocolMover.cc	pose / subpose_manipulation_util.hh
movers / RNA_DeNovoProtocolMover.cc	pose / util.hh
movers / RNA_DeNovoProtocolMover.cc	pose / rna / util.hh
movers / RNA_DeNovoProtocolMover.cc	scoring / constraints / util.hh
movers / RNA_DeNovoProtocolMover.cc	sequence / util.hh
movers / RNA_DeNovoProtocolMover.hh	pose / rna / BasePair.hh
movers / RNA_DeNovoProtocolMover.hh	kinematics / FoldTree.fwd.hh
movers / RNA_DeNovoProtocolMover.hh	pose / full_model_info / FullModelParameters.fwd.hh
movers / RNA_DeNovoProtocolMover.hh	pose / Pose.fwd.hh
movers / RNA_DeNovoProtocolMover.hh	chemical / ResidueTypeSet.fwd.hh
movers / RNA_DeNovoProtocolMover.hh	import_pose / RNA_DeNovoParameters.fwd.hh
movers / RNA_DeNovoProtocolMover.hh	import_pose / options / RNA_DeNovoProtocolOptions.fwd.hh
movers / RNA_DeNovoProtocolMover.hh	pose / rna / RNA_SecStruct.fwd.hh
movers / RNA_DeNovoProtocolMover.hh	scoring / ScoreFunction.fwd.hh
movers / RNA_DeNovoProtocolMover.hh	types.hh
RNA_FragmentMonteCarlo.cc	pose / toolbox / AtomLevelDomainMap.hh
RNA_FragmentMonteCarlo.cc	import_pose / libraries / BasePairStepLibrary.hh
RNA_FragmentMonteCarlo.cc	chemical / ChemicalManager.hh
RNA_FragmentMonteCarlo.cc	import_pose / libraries / ChunkSet.hh
RNA_FragmentMonteCarlo.cc	scoring / constraints / ConstraintSet.hh
RNA_FragmentMonteCarlo.cc	scoring / constraints / CoordinateConstraint.hh
RNA_FragmentMonteCarlo.cc	pose / extra_pose_info_util.hh
RNA_FragmentMonteCarlo.cc	import_pose / import_pose.hh
RNA_FragmentMonteCarlo.cc	kinematics / Jump.hh
RNA_FragmentMonteCarlo.cc	pose / PDBInfo.hh
RNA_FragmentMonteCarlo.cc	pose / Pose.hh
RNA_FragmentMonteCarlo.cc	scoring / rms_util.hh
RNA_FragmentMonteCarlo.cc	import_pose / RNA_BasePairHandler.hh
RNA_FragmentMonteCarlo.cc	import_pose / libraries / RNA_ChunkLibrary.hh
RNA_FragmentMonteCarlo.cc	fragment / rna / RNA_FragmentHomologyExclusion.hh
RNA_FragmentMonteCarlo.cc	import_pose / options / RNA_FragmentMonteCarloOptions.hh
RNA_FragmentMonteCarlo.cc	import_pose / RNA_JumpMover.hh
RNA_FragmentMonteCarlo.cc	import_pose / libraries / RNA_LibraryManager.hh
RNA_FragmentMonteCarlo.cc	scoring / rna / RNA_ScoringInfo.hh
RNA_FragmentMonteCarlo.cc	pose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
RNA_FragmentMonteCarlo.cc	scoring / ScoreFunctionFactory.hh
RNA_FragmentMonteCarlo.cc	kinematics / ShortestPathInFoldTree.hh
RNA_FragmentMonteCarlo.cc	util / SwitchResidueTypeSet.hh
RNA_FragmentMonteCarlo.cc	pose / copydofs / util.hh
RNA_FragmentMonteCarlo.cc	pose / util.hh
RNA_FragmentMonteCarlo.cc	pose / rna / util.hh
RNA_FragmentMonteCarlo.hh	id / AtomID.fwd.hh
RNA_FragmentMonteCarlo.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
RNA_FragmentMonteCarlo.hh	scoring / constraints / ConstraintSet.fwd.hh
RNA_FragmentMonteCarlo.hh	kinematics / FoldTree.hh
RNA_FragmentMonteCarlo.hh	import_pose / RNA_BasePairHandler.fwd.hh
RNA_FragmentMonteCarlo.hh	import_pose / libraries / RNA_ChunkLibrary.fwd.hh
RNA_FragmentMonteCarlo.hh	import_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
RNA_FragmentMonteCarlo.hh	scoring / ScoreFunction.fwd.hh
RNA_FragmentMonteCarlo.hh	types.hh
output / RNA_FragmentMonteCarloOutputter.cc	kinematics / Jump.hh
output / RNA_FragmentMonteCarloOutputter.cc	pose / Pose.hh
output / RNA_FragmentMonteCarloOutputter.cc	import_pose / options / RNA_FragmentMonteCarloOptions.hh
output / RNA_FragmentMonteCarloOutputter.cc	kinematics / RT.hh
output / RNA_FragmentMonteCarloOutputter.cc	scoring / ScoreFunction.hh
output / RNA_FragmentMonteCarloOutputter.cc	kinematics / Stub.hh
output / RNA_FragmentMonteCarloOutputter.cc	pose / rna / util.hh
output / RNA_FragmentMonteCarloOutputter.hh	import_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
output / RNA_FragmentMonteCarloOutputter.hh	kinematics / RT.fwd.hh
output / RNA_FragmentMonteCarloOutputter.hh	scoring / ScoreFunction.fwd.hh
output / RNA_FragmentMonteCarloOutputter.hh	kinematics / Stub.fwd.hh
output / RNA_FragmentMonteCarloOutputter.hh	pose / rna / StubStubType.fwd.hh
movers / RNA_FragmentMover.cc	id / AtomID.hh
movers / RNA_FragmentMover.cc	pose / toolbox / AtomLevelDomainMap.fwd.hh
movers / RNA_FragmentMover.cc	pose / toolbox / AtomLevelDomainMap.hh
movers / RNA_FragmentMover.cc	kinematics / FoldTree.hh
movers / RNA_FragmentMover.cc	pose / full_model_info / FullModelInfo.hh
movers / RNA_FragmentMover.cc	pose / full_model_info / FullModelParameters.hh
movers / RNA_FragmentMover.cc	pose / full_model_info / FullModelParameterType.hh
movers / RNA_FragmentMover.cc	kinematics / Jump.hh
movers / RNA_FragmentMover.cc	pose / Pose.hh
movers / RNA_FragmentMover.cc	conformation / Residue.hh
movers / RNA_FragmentMover.cc	fragment / rna / RNA_Fragments.hh
movers / RNA_FragmentMover.cc	fragment / rna / RNA_MatchType.hh
movers / RNA_FragmentMover.cc	types.hh
movers / RNA_FragmentMover.fwd.hh	types.hh
movers / RNA_FragmentMover.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
movers / RNA_FragmentMover.hh	fragment / rna / FullAtomRNA_Fragments.hh
movers / RNA_FragmentMover.hh	pose / Pose.fwd.hh
movers / RNA_FragmentMover.hh	fragment / rna / RNA_FragmentHomologyExclusion.hh
movers / RNA_FragmentMover.hh	fragment / rna / RNA_Fragments.fwd.hh
movers / RNA_FragmentMover.hh	scoring / ScoreFunction.fwd.hh
movers / RNA_FragmentMover.hh	types.hh
movers / RNA_HelixMover.cc	kinematics / Jump.hh
movers / RNA_HelixMover.cc	pose / Pose.hh
movers / RNA_HelixMover.cc	conformation / Residue.hh
movers / RNA_HelixMover.cc	import_pose / RNA_BasePairHandler.hh
movers / RNA_HelixMover.cc	types.hh
movers / RNA_HelixMover.cc	pose / rna / util.hh
movers / RNA_HelixMover.hh	kinematics / FoldTree.hh
movers / RNA_HelixMover.hh	pose / Pose.fwd.hh
movers / RNA_HelixMover.hh	import_pose / RNA_BasePairHandler.fwd.hh
movers / RNA_HelixMover.hh	types.hh
movers / RNA_Minimizer.cc	id / AtomID.hh
movers / RNA_Minimizer.cc	id / AtomID_Map.hh
movers / RNA_Minimizer.cc	pose / toolbox / AtomLevelDomainMap.hh
movers / RNA_Minimizer.cc	optimization / AtomTreeMinimizer.hh
movers / RNA_Minimizer.cc	optimization / CartesianMinimizer.hh
movers / RNA_Minimizer.cc	conformation / Conformation.hh
movers / RNA_Minimizer.cc	scoring / constraints / ConstraintSet.fwd.hh
movers / RNA_Minimizer.cc	scoring / constraints / ConstraintSet.hh
movers / RNA_Minimizer.cc	id / DOF_ID.hh
movers / RNA_Minimizer.cc	kinematics / FoldTree.hh
movers / RNA_Minimizer.cc	pose / full_model_info / FullModelInfo.hh
movers / RNA_Minimizer.cc	scoring / func / HarmonicFunc.hh
movers / RNA_Minimizer.cc	optimization / MinimizerOptions.hh
movers / RNA_Minimizer.cc	kinematics / MoveMap.hh
movers / RNA_Minimizer.cc	id / NamedAtomID.hh
movers / RNA_Minimizer.cc	pack / pack_rotamers.hh
movers / RNA_Minimizer.cc	pack / task / PackerTask.hh
movers / RNA_Minimizer.cc	pose / Pose.hh
movers / RNA_Minimizer.cc	conformation / Residue.hh
movers / RNA_Minimizer.cc	import_pose / libraries / RNA_ChunkLibrary.hh
movers / RNA_Minimizer.cc	import_pose / options / RNA_MinimizerOptions.hh
movers / RNA_Minimizer.cc	pack / rotamer_trials.hh
movers / RNA_Minimizer.cc	scoring / ScoreFunction.fwd.hh
movers / RNA_Minimizer.cc	scoring / ScoreFunction.hh
movers / RNA_Minimizer.cc	scoring / ScoreFunctionFactory.hh
movers / RNA_Minimizer.cc	scoring / ScoreType.hh
movers / RNA_Minimizer.cc	pack / task / TaskFactory.hh
movers / RNA_Minimizer.cc	id / TorsionID.hh
movers / RNA_Minimizer.cc	types.hh
movers / RNA_Minimizer.cc	scoring / constraints / util.hh
movers / RNA_Minimizer.cc	pose / rna / util.hh
movers / RNA_Minimizer.cc	pose / util.hh
movers / RNA_Minimizer.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
movers / RNA_Minimizer.hh	kinematics / MoveMap.fwd.hh
movers / RNA_Minimizer.hh	pose / Pose.fwd.hh
movers / RNA_Minimizer.hh	import_pose / options / RNA_MinimizerOptions.hh
movers / RNA_Minimizer.hh	scoring / ScoreFunction.hh
movers / RNA_Relaxer.cc	scoring / constraints / ConstraintSet.hh
movers / RNA_Relaxer.cc	kinematics / Jump.hh
movers / RNA_Relaxer.cc	pose / Pose.hh
movers / RNA_Relaxer.cc	scoring / rms_util.hh
movers / RNA_Relaxer.cc	scoring / ScoreFunction.fwd.hh
movers / RNA_Relaxer.cc	scoring / ScoreFunction.hh
movers / RNA_Relaxer.cc	scoring / ScoreFunctionFactory.hh
movers / RNA_Relaxer.cc	scoring / ScoreType.hh
movers / RNA_Relaxer.cc	types.hh
movers / RNA_Relaxer.hh	pose / Pose.fwd.hh
movers / RNA_Relaxer.hh	types.hh
movers / RNP_HighResMover.cc	scoring / constraints / ConstraintSet.hh
movers / RNP_HighResMover.cc	scoring / Energies.hh
movers / RNP_HighResMover.cc	kinematics / Jump.hh
movers / RNP_HighResMover.cc	kinematics / MoveMap.hh
movers / RNP_HighResMover.cc	pack / pack_rotamers.hh
movers / RNP_HighResMover.cc	pack / task / PackerTask.hh
movers / RNP_HighResMover.cc	pose / Pose.hh
movers / RNP_HighResMover.cc	conformation / Residue.hh
movers / RNP_HighResMover.cc	scoring / rms_util.hh
movers / RNP_HighResMover.cc	import_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
movers / RNP_HighResMover.cc	pack / rotamer_trials.hh
movers / RNP_HighResMover.cc	scoring / ScoreFunction.fwd.hh
movers / RNP_HighResMover.cc	scoring / ScoreFunction.hh
movers / RNP_HighResMover.cc	scoring / ScoreFunctionFactory.hh
movers / RNP_HighResMover.cc	scoring / ScoreType.hh
movers / RNP_HighResMover.cc	pack / task / TaskFactory.hh
movers / RNP_HighResMover.cc	types.hh
movers / RNP_HighResMover.hh	kinematics / FoldTree.hh
movers / RNP_HighResMover.hh	pose / Pose.fwd.hh
movers / RNP_HighResMover.hh	import_pose / options / RNA_FragmentMonteCarloOptions.hh
movers / RNP_HighResMover.hh	types.hh
util.cc	pose / annotated_sequence.hh
util.cc	kinematics / tree / Atom.hh
util.cc	id / AtomID.hh
util.cc	pose / toolbox / AtomLevelDomainMap.hh
util.cc	scoring / constraints / AtomPairConstraint.hh
util.cc	kinematics / AtomTree.hh
util.cc	pose / rna / BasePairStep.hh
util.cc	io / silent / BinarySilentStruct.hh
util.cc	chemical / ChemicalManager.hh
util.cc	scoring / constraints / ConstraintSet.fwd.hh
util.cc	scoring / methods / EnergyMethodOptions.hh
util.cc	scoring / func / FadeFunc.hh
util.cc	kinematics / FoldTree.hh
util.cc	scoring / func / HarmonicFunc.hh
util.cc	scoring / hbonds / HBondOptions.hh
util.cc	scoring / hbonds / hbonds.hh
util.cc	scoring / hbonds / HBondSet.hh
util.cc	import_pose / import_pose.hh
util.cc	kinematics / MoveMap.hh
util.cc	id / NamedAtomID.hh
util.cc	pose / PDBInfo.hh
util.cc	pose / Pose.hh
util.cc	conformation / Residue.hh
util.cc	conformation / ResidueFactory.hh
util.cc	import_pose / libraries / RNA_ChunkLibrary.hh
util.cc	chemical / rna / RNA_Info.hh
util.cc	fragment / rna / RNA_MatchType.hh
util.cc	scoring / rna / RNA_ScoringInfo.hh
util.cc	pose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
util.cc	scoring / ScoreFunction.hh
util.cc	scoring / ScoreFunctionFactory.hh
util.cc	io / silent / SilentFileData.hh
util.cc	io / silent / SilentFileOptions.hh
util.cc	id / TorsionID.hh
util.cc	types.hh
util.cc	chemical / rna / util.hh
util.cc	pose / rna / util.hh
util.cc	pose / variant_util.hh
util.cc	chemical / VariantType.hh
util.hh	id / AtomID.fwd.hh
util.hh	pose / toolbox / AtomLevelDomainMap.fwd.hh
util.hh	pose / rna / BasePair.hh
util.hh	pose / rna / BasePairStep.fwd.hh
util.hh	kinematics / FoldTree.fwd.hh
util.hh	kinematics / MoveMap.fwd.hh
util.hh	pose / Pose.fwd.hh
util.hh	conformation / Residue.fwd.hh
util.hh	pose / rna / RNA_BaseDoubletClasses.hh
util.hh	scoring / ScoreFunction.fwd.hh
util.hh	types.hh