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denovo → core Relation

File in src/protocols/rna/denovoIncludes file in src/core
coarse / CoarseRNA_Fragments.ccid / AtomID.hh
coarse / CoarseRNA_Fragments.ccpose / toolbox / AtomID_Mapper.hh
coarse / CoarseRNA_Fragments.ccpose / toolbox / AtomLevelDomainMap.hh
coarse / CoarseRNA_Fragments.ccchemical / ChemicalManager.hh
coarse / CoarseRNA_Fragments.cckinematics / FoldTree.hh
coarse / CoarseRNA_Fragments.ccimport_pose / import_pose.hh
coarse / CoarseRNA_Fragments.ccpose / MiniPose.hh
coarse / CoarseRNA_Fragments.ccpose / Pose.hh
coarse / CoarseRNA_Fragments.ccconformation / Residue.hh
coarse / CoarseRNA_Fragments.ccchemical / ResidueTypeSet.hh
coarse / CoarseRNA_Fragments.ccfragment / rna / RNA_FragmentHomologyExclusion.hh
coarse / CoarseRNA_Fragments.ccpose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
coarse / CoarseRNA_Fragments.cctypes.hh
coarse / CoarseRNA_Fragments.ccpose / copydofs / util.hh
coarse / CoarseRNA_Fragments.ccpose / rna / util.hh
coarse / CoarseRNA_Fragments.ccpose / util.hh
coarse / CoarseRNA_Fragments.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
coarse / CoarseRNA_Fragments.hhpose / MiniPose.hh
coarse / CoarseRNA_Fragments.hhpose / Pose.fwd.hh
coarse / CoarseRNA_Fragments.hhfragment / rna / RNA_FragmentHomologyExclusion.fwd.hh
coarse / CoarseRNA_Fragments.hhfragment / rna / RNA_Fragments.hh
coarse / CoarseRNA_Fragments.hhfragment / rna / TorsionSet.fwd.hh
coarse / CoarseRNA_Fragments.hhtypes.hh
coarse / CoarseRNA_LoopCloser.cckinematics / tree / Atom.hh
coarse / CoarseRNA_LoopCloser.ccid / AtomID.hh
coarse / CoarseRNA_LoopCloser.ccpose / toolbox / AtomLevelDomainMap.hh
coarse / CoarseRNA_LoopCloser.cckinematics / AtomTree.hh
coarse / CoarseRNA_LoopCloser.ccid / DOF_ID.hh
coarse / CoarseRNA_LoopCloser.cckinematics / FoldTree.hh
coarse / CoarseRNA_LoopCloser.ccid / NamedAtomID.hh
coarse / CoarseRNA_LoopCloser.ccpose / Pose.hh
coarse / CoarseRNA_LoopCloser.ccchemical / ResidueType.hh
coarse / CoarseRNA_LoopCloser.ccscoring / ScoreFunction.hh
coarse / CoarseRNA_LoopCloser.ccid / TorsionID.hh
coarse / CoarseRNA_LoopCloser.cctypes.hh
coarse / CoarseRNA_LoopCloser.ccpose / util.hh
coarse / CoarseRNA_LoopCloser.ccchemical / VariantType.hh
coarse / CoarseRNA_LoopCloser.hhkinematics / tree / Atom.fwd.hh
coarse / CoarseRNA_LoopCloser.hhpose / toolbox / AtomLevelDomainMap.hh
coarse / CoarseRNA_LoopCloser.hhid / DOF_ID.hh
coarse / CoarseRNA_LoopCloser.hhid / NamedAtomID.hh
coarse / CoarseRNA_LoopCloser.hhpose / Pose.fwd.hh
coarse / CoarseRNA_LoopCloser.hhscoring / ScoreFunction.hh
coarse / CoarseRNA_LoopCloser.hhtypes.hh
coarse / MultipleDomainMover.ccid / AtomID.hh
coarse / MultipleDomainMover.ccpose / toolbox / AtomID_Mapper.hh
coarse / MultipleDomainMover.ccpose / toolbox / AtomLevelDomainMap.hh
coarse / MultipleDomainMover.ccconformation / Conformation.hh
coarse / MultipleDomainMover.cckinematics / FoldTree.hh
coarse / MultipleDomainMover.cckinematics / Jump.hh
coarse / MultipleDomainMover.ccid / NamedAtomID.hh
coarse / MultipleDomainMover.ccpose / Pose.hh
coarse / MultipleDomainMover.ccconformation / Residue.hh
coarse / MultipleDomainMover.cckinematics / Stub.hh
coarse / MultipleDomainMover.cctypes.hh
coarse / MultipleDomainMover.hhpose / toolbox / AtomLevelDomainMap.hh
coarse / MultipleDomainMover.hhpose / Pose.fwd.hh
coarse / MultipleDomainMover.hhtypes.hh
movers / RNA_DeNovoMasterMover.ccpose / toolbox / AtomLevelDomainMap.hh
movers / RNA_DeNovoMasterMover.ccscoring / Energies.hh
movers / RNA_DeNovoMasterMover.ccfragment / rna / FullAtomRNA_Fragments.hh
movers / RNA_DeNovoMasterMover.cckinematics / MoveMap.hh
movers / RNA_DeNovoMasterMover.ccpose / Pose.hh
movers / RNA_DeNovoMasterMover.ccconformation / Residue.hh
movers / RNA_DeNovoMasterMover.ccimport_pose / RNA_BasePairHandler.hh
movers / RNA_DeNovoMasterMover.ccimport_pose / libraries / RNA_ChunkLibrary.hh
movers / RNA_DeNovoMasterMover.ccimport_pose / options / RNA_FragmentMonteCarloOptions.hh
movers / RNA_DeNovoMasterMover.ccfragment / rna / RNA_Fragments.hh
movers / RNA_DeNovoMasterMover.ccimport_pose / libraries / RNA_JumpLibrary.hh
movers / RNA_DeNovoMasterMover.ccimport_pose / RNA_JumpMover.hh
movers / RNA_DeNovoMasterMover.ccimport_pose / libraries / RNA_LibraryManager.hh
movers / RNA_DeNovoMasterMover.ccscoring / ScoreFunction.hh
movers / RNA_DeNovoMasterMover.ccscoring / ScoreFunctionFactory.hh
movers / RNA_DeNovoMasterMover.ccpose / rna / util.hh
movers / RNA_DeNovoMasterMover.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
movers / RNA_DeNovoMasterMover.hhkinematics / FoldTree.hh
movers / RNA_DeNovoMasterMover.hhpose / Pose.fwd.hh
movers / RNA_DeNovoMasterMover.hhimport_pose / RNA_BasePairHandler.fwd.hh
movers / RNA_DeNovoMasterMover.hhimport_pose / libraries / RNA_ChunkLibrary.fwd.hh
movers / RNA_DeNovoMasterMover.hhimport_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
movers / RNA_DeNovoMasterMover.hhfragment / rna / RNA_Fragments.fwd.hh
movers / RNA_DeNovoMasterMover.hhimport_pose / RNA_JumpMover.fwd.hh
movers / RNA_DeNovoMasterMover.hhscoring / ScoreFunction.fwd.hh
movers / RNA_DeNovoMasterMover.hhtypes.hh
RNA_DeNovoPoseInitializer.ccpose / annotated_sequence.hh
RNA_DeNovoPoseInitializer.cckinematics / tree / Atom.hh
RNA_DeNovoPoseInitializer.ccid / AtomID.hh
RNA_DeNovoPoseInitializer.ccpose / toolbox / AtomLevelDomainMap.hh
RNA_DeNovoPoseInitializer.cckinematics / AtomTree.hh
RNA_DeNovoPoseInitializer.ccchemical / ChemicalManager.hh
RNA_DeNovoPoseInitializer.ccimport_pose / libraries / ChunkSet.hh
RNA_DeNovoPoseInitializer.cckinematics / FoldTree.hh
RNA_DeNovoPoseInitializer.ccpose / full_model_info / FullModelInfo.hh
RNA_DeNovoPoseInitializer.ccpose / full_model_info / FullModelParameters.hh
RNA_DeNovoPoseInitializer.ccimport_pose / import_pose.hh
RNA_DeNovoPoseInitializer.ccpose / MiniPose.hh
RNA_DeNovoPoseInitializer.ccid / NamedAtomID.hh
RNA_DeNovoPoseInitializer.ccpose / PDBInfo.hh
RNA_DeNovoPoseInitializer.ccpose / Pose.hh
RNA_DeNovoPoseInitializer.ccconformation / Residue.hh
RNA_DeNovoPoseInitializer.ccconformation / ResidueFactory.hh
RNA_DeNovoPoseInitializer.ccchemical / ResidueProperties.hh
RNA_DeNovoPoseInitializer.ccchemical / ResidueTypeSet.hh
RNA_DeNovoPoseInitializer.ccimport_pose / RNA_BasePairHandler.hh
RNA_DeNovoPoseInitializer.ccimport_pose / libraries / RNA_ChunkLibrary.hh
RNA_DeNovoPoseInitializer.ccimport_pose / RNA_DeNovoParameters.hh
RNA_DeNovoPoseInitializer.ccimport_pose / RNA_JumpMover.hh
RNA_DeNovoPoseInitializer.ccimport_pose / libraries / RNA_LibraryManager.hh
RNA_DeNovoPoseInitializer.ccscoring / rna / RNA_LowResolutionPotential.hh
RNA_DeNovoPoseInitializer.ccscoring / rna / RNA_ScoringInfo.hh
RNA_DeNovoPoseInitializer.ccpose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
RNA_DeNovoPoseInitializer.ccscoring / ScoreType.hh
RNA_DeNovoPoseInitializer.ccid / TorsionID.hh
RNA_DeNovoPoseInitializer.cctypes.hh
RNA_DeNovoPoseInitializer.ccchemical / rna / util.hh
RNA_DeNovoPoseInitializer.ccpose / full_model_info / util.hh
RNA_DeNovoPoseInitializer.ccpose / rna / util.hh
RNA_DeNovoPoseInitializer.ccpose / copydofs / util.hh
RNA_DeNovoPoseInitializer.ccpose / variant_util.hh
RNA_DeNovoPoseInitializer.ccchemical / VariantType.hh
RNA_DeNovoPoseInitializer.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
RNA_DeNovoPoseInitializer.hhpose / rna / BasePairStep.hh
RNA_DeNovoPoseInitializer.hhkinematics / FoldTree.fwd.hh
RNA_DeNovoPoseInitializer.hhpose / Pose.fwd.hh
RNA_DeNovoPoseInitializer.hhimport_pose / libraries / RNA_ChunkLibrary.fwd.hh
RNA_DeNovoPoseInitializer.hhimport_pose / RNA_DeNovoParameters.hh
RNA_DeNovoPoseInitializer.hhimport_pose / RNA_JumpMover.fwd.hh
RNA_DeNovoPoseInitializer.hhtypes.hh
RNA_DeNovoProtocol.ccid / AtomID.hh
RNA_DeNovoProtocol.ccid / AtomID_Map.hh
RNA_DeNovoProtocol.ccio / silent / BinarySilentStruct.hh
RNA_DeNovoProtocol.ccscoring / constraints / ConstraintSet.hh
RNA_DeNovoProtocol.ccid / DOF_ID.hh
RNA_DeNovoProtocol.ccscoring / Energies.hh
RNA_DeNovoProtocol.ccscoring / EnergyMap.hh
RNA_DeNovoProtocol.ccpose / extra_pose_info_util.hh
RNA_DeNovoProtocol.ccfragment / rna / FullAtomRNA_Fragments.hh
RNA_DeNovoProtocol.cckinematics / MoveMap.hh
RNA_DeNovoProtocol.ccio / pdb / pdb_writer.hh
RNA_DeNovoProtocol.ccpose / Pose.hh
RNA_DeNovoProtocol.ccconformation / Residue.hh
RNA_DeNovoProtocol.ccscoring / rms_util.hh
RNA_DeNovoProtocol.ccpose / rna / RNA_BaseDoubletClasses.hh
RNA_DeNovoProtocol.ccpose / rna / RNA_BasePairClassifier.hh
RNA_DeNovoProtocol.ccimport_pose / RNA_BasePairHandler.hh
RNA_DeNovoProtocol.ccscoring / rna / chemical_shift / RNA_ChemicalShiftPotential.hh
RNA_DeNovoProtocol.ccimport_pose / libraries / RNA_ChunkLibrary.hh
RNA_DeNovoProtocol.ccimport_pose / RNA_DeNovoParameters.hh
RNA_DeNovoProtocol.ccimport_pose / options / RNA_DeNovoProtocolOptions.hh
RNA_DeNovoProtocol.ccscoring / rna / RNA_ScoringInfo.hh
RNA_DeNovoProtocol.ccio / silent / RNA_SilentStruct.hh
RNA_DeNovoProtocol.ccio / silent / ScoreFileSilentStruct.hh
RNA_DeNovoProtocol.ccscoring / ScoreFunction.hh
RNA_DeNovoProtocol.ccscoring / ScoreFunctionFactory.hh
RNA_DeNovoProtocol.ccscoring / ScoreType.hh
RNA_DeNovoProtocol.ccscoring / ScoringManager.hh
RNA_DeNovoProtocol.ccio / silent / SilentFileData.hh
RNA_DeNovoProtocol.ccio / silent / SilentFileOptions.hh
RNA_DeNovoProtocol.ccutil / SwitchResidueTypeSet.hh
RNA_DeNovoProtocol.cctypes.hh
RNA_DeNovoProtocol.ccio / silent / util.hh
RNA_DeNovoProtocol.ccpose / rna / util.hh
RNA_DeNovoProtocol.ccchemical / rna / util.hh
RNA_DeNovoProtocol.hhid / AtomID.fwd.hh
RNA_DeNovoProtocol.hhpose / Pose.fwd.hh
RNA_DeNovoProtocol.hhimport_pose / options / RNA_DeNovoProtocolOptions.fwd.hh
RNA_DeNovoProtocol.hhscoring / ScoreFunction.fwd.hh
RNA_DeNovoProtocol.hhio / silent / silent.fwd.hh
RNA_DeNovoProtocol.hhtypes.hh
movers / RNA_DeNovoProtocolMover.ccpose / annotated_sequence.hh
movers / RNA_DeNovoProtocolMover.ccid / AtomID.hh
movers / RNA_DeNovoProtocolMover.ccscoring / constraints / AtomPairConstraint.hh
movers / RNA_DeNovoProtocolMover.ccpose / datacache / CacheableDataType.hh
movers / RNA_DeNovoProtocolMover.ccchemical / ChemicalManager.hh
movers / RNA_DeNovoProtocolMover.ccscoring / constraints / ConstraintIO.hh
movers / RNA_DeNovoProtocolMover.ccscoring / constraints / ConstraintSet.hh
movers / RNA_DeNovoProtocolMover.ccscoring / Energies.hh
movers / RNA_DeNovoProtocolMover.ccpose / extra_pose_info_util.hh
movers / RNA_DeNovoProtocolMover.ccscoring / func / FadeFunc.hh
movers / RNA_DeNovoProtocolMover.ccpose / full_model_info / FullModelInfo.hh
movers / RNA_DeNovoProtocolMover.ccpose / full_model_info / FullModelParameters.hh
movers / RNA_DeNovoProtocolMover.ccimport_pose / import_pose.hh
movers / RNA_DeNovoProtocolMover.ccpose / rna / leontis_westhof_util.hh
movers / RNA_DeNovoProtocolMover.ccid / NamedAtomID.hh
movers / RNA_DeNovoProtocolMover.ccpose / PDBInfo.hh
movers / RNA_DeNovoProtocolMover.ccpose / Pose.hh
movers / RNA_DeNovoProtocolMover.ccchemical / ResidueType.hh
movers / RNA_DeNovoProtocolMover.ccchemical / ResidueTypeSet.hh
movers / RNA_DeNovoProtocolMover.ccpose / rna / RNA_BasePairClassifier.hh
movers / RNA_DeNovoProtocolMover.ccimport_pose / RNA_BasePairHandler.hh
movers / RNA_DeNovoProtocolMover.ccscoring / rna / chemical_shift / RNA_ChemicalShiftPotential.hh
movers / RNA_DeNovoProtocolMover.ccimport_pose / libraries / RNA_ChunkLibrary.hh
movers / RNA_DeNovoProtocolMover.ccio / rna / RNA_DataReader.hh
movers / RNA_DeNovoProtocolMover.ccimport_pose / RNA_DeNovoParameters.hh
movers / RNA_DeNovoProtocolMover.ccimport_pose / options / RNA_DeNovoProtocolOptions.hh
movers / RNA_DeNovoProtocolMover.ccimport_pose / RNA_HelixAssembler.hh
movers / RNA_DeNovoProtocolMover.ccscoring / rna / RNA_ScoringInfo.hh
movers / RNA_DeNovoProtocolMover.ccpose / rna / RNA_SecStruct.hh
movers / RNA_DeNovoProtocolMover.ccscoring / ScoreFunction.hh
movers / RNA_DeNovoProtocolMover.ccscoring / ScoreFunctionFactory.hh
movers / RNA_DeNovoProtocolMover.ccscoring / ScoringManager.hh
movers / RNA_DeNovoProtocolMover.ccid / SequenceMapping.hh
movers / RNA_DeNovoProtocolMover.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
movers / RNA_DeNovoProtocolMover.ccpose / subpose_manipulation_util.hh
movers / RNA_DeNovoProtocolMover.ccpose / util.hh
movers / RNA_DeNovoProtocolMover.ccpose / rna / util.hh
movers / RNA_DeNovoProtocolMover.ccscoring / constraints / util.hh
movers / RNA_DeNovoProtocolMover.ccsequence / util.hh
movers / RNA_DeNovoProtocolMover.hhpose / rna / BasePair.hh
movers / RNA_DeNovoProtocolMover.hhkinematics / FoldTree.fwd.hh
movers / RNA_DeNovoProtocolMover.hhpose / full_model_info / FullModelParameters.fwd.hh
movers / RNA_DeNovoProtocolMover.hhpose / Pose.fwd.hh
movers / RNA_DeNovoProtocolMover.hhchemical / ResidueTypeSet.fwd.hh
movers / RNA_DeNovoProtocolMover.hhimport_pose / RNA_DeNovoParameters.fwd.hh
movers / RNA_DeNovoProtocolMover.hhimport_pose / options / RNA_DeNovoProtocolOptions.fwd.hh
movers / RNA_DeNovoProtocolMover.hhpose / rna / RNA_SecStruct.fwd.hh
movers / RNA_DeNovoProtocolMover.hhscoring / ScoreFunction.fwd.hh
movers / RNA_DeNovoProtocolMover.hhtypes.hh
RNA_FragmentMonteCarlo.ccpose / toolbox / AtomLevelDomainMap.hh
RNA_FragmentMonteCarlo.ccimport_pose / libraries / BasePairStepLibrary.hh
RNA_FragmentMonteCarlo.ccchemical / ChemicalManager.hh
RNA_FragmentMonteCarlo.ccimport_pose / libraries / ChunkSet.hh
RNA_FragmentMonteCarlo.ccscoring / constraints / ConstraintSet.hh
RNA_FragmentMonteCarlo.ccscoring / constraints / CoordinateConstraint.hh
RNA_FragmentMonteCarlo.ccpose / extra_pose_info_util.hh
RNA_FragmentMonteCarlo.ccimport_pose / import_pose.hh
RNA_FragmentMonteCarlo.cckinematics / Jump.hh
RNA_FragmentMonteCarlo.ccpose / PDBInfo.hh
RNA_FragmentMonteCarlo.ccpose / Pose.hh
RNA_FragmentMonteCarlo.ccscoring / rms_util.hh
RNA_FragmentMonteCarlo.ccimport_pose / RNA_BasePairHandler.hh
RNA_FragmentMonteCarlo.ccimport_pose / libraries / RNA_ChunkLibrary.hh
RNA_FragmentMonteCarlo.ccfragment / rna / RNA_FragmentHomologyExclusion.hh
RNA_FragmentMonteCarlo.ccimport_pose / options / RNA_FragmentMonteCarloOptions.hh
RNA_FragmentMonteCarlo.ccimport_pose / RNA_JumpMover.hh
RNA_FragmentMonteCarlo.ccimport_pose / libraries / RNA_LibraryManager.hh
RNA_FragmentMonteCarlo.ccscoring / rna / RNA_ScoringInfo.hh
RNA_FragmentMonteCarlo.ccpose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
RNA_FragmentMonteCarlo.ccscoring / ScoreFunctionFactory.hh
RNA_FragmentMonteCarlo.cckinematics / ShortestPathInFoldTree.hh
RNA_FragmentMonteCarlo.ccutil / SwitchResidueTypeSet.hh
RNA_FragmentMonteCarlo.ccpose / copydofs / util.hh
RNA_FragmentMonteCarlo.ccpose / util.hh
RNA_FragmentMonteCarlo.ccpose / rna / util.hh
RNA_FragmentMonteCarlo.hhid / AtomID.fwd.hh
RNA_FragmentMonteCarlo.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
RNA_FragmentMonteCarlo.hhscoring / constraints / ConstraintSet.fwd.hh
RNA_FragmentMonteCarlo.hhkinematics / FoldTree.hh
RNA_FragmentMonteCarlo.hhimport_pose / RNA_BasePairHandler.fwd.hh
RNA_FragmentMonteCarlo.hhimport_pose / libraries / RNA_ChunkLibrary.fwd.hh
RNA_FragmentMonteCarlo.hhimport_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
RNA_FragmentMonteCarlo.hhscoring / ScoreFunction.fwd.hh
RNA_FragmentMonteCarlo.hhtypes.hh
output / RNA_FragmentMonteCarloOutputter.cckinematics / Jump.hh
output / RNA_FragmentMonteCarloOutputter.ccpose / Pose.hh
output / RNA_FragmentMonteCarloOutputter.ccimport_pose / options / RNA_FragmentMonteCarloOptions.hh
output / RNA_FragmentMonteCarloOutputter.cckinematics / RT.hh
output / RNA_FragmentMonteCarloOutputter.ccscoring / ScoreFunction.hh
output / RNA_FragmentMonteCarloOutputter.cckinematics / Stub.hh
output / RNA_FragmentMonteCarloOutputter.ccpose / rna / util.hh
output / RNA_FragmentMonteCarloOutputter.hhimport_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
output / RNA_FragmentMonteCarloOutputter.hhkinematics / RT.fwd.hh
output / RNA_FragmentMonteCarloOutputter.hhscoring / ScoreFunction.fwd.hh
output / RNA_FragmentMonteCarloOutputter.hhkinematics / Stub.fwd.hh
output / RNA_FragmentMonteCarloOutputter.hhpose / rna / StubStubType.fwd.hh
movers / RNA_FragmentMover.ccid / AtomID.hh
movers / RNA_FragmentMover.ccpose / toolbox / AtomLevelDomainMap.fwd.hh
movers / RNA_FragmentMover.ccpose / toolbox / AtomLevelDomainMap.hh
movers / RNA_FragmentMover.cckinematics / FoldTree.hh
movers / RNA_FragmentMover.ccpose / full_model_info / FullModelInfo.hh
movers / RNA_FragmentMover.ccpose / full_model_info / FullModelParameters.hh
movers / RNA_FragmentMover.ccpose / full_model_info / FullModelParameterType.hh
movers / RNA_FragmentMover.cckinematics / Jump.hh
movers / RNA_FragmentMover.ccpose / Pose.hh
movers / RNA_FragmentMover.ccconformation / Residue.hh
movers / RNA_FragmentMover.ccfragment / rna / RNA_Fragments.hh
movers / RNA_FragmentMover.ccfragment / rna / RNA_MatchType.hh
movers / RNA_FragmentMover.cctypes.hh
movers / RNA_FragmentMover.fwd.hhtypes.hh
movers / RNA_FragmentMover.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
movers / RNA_FragmentMover.hhfragment / rna / FullAtomRNA_Fragments.hh
movers / RNA_FragmentMover.hhpose / Pose.fwd.hh
movers / RNA_FragmentMover.hhfragment / rna / RNA_FragmentHomologyExclusion.hh
movers / RNA_FragmentMover.hhfragment / rna / RNA_Fragments.fwd.hh
movers / RNA_FragmentMover.hhscoring / ScoreFunction.fwd.hh
movers / RNA_FragmentMover.hhtypes.hh
movers / RNA_HelixMover.cckinematics / Jump.hh
movers / RNA_HelixMover.ccpose / Pose.hh
movers / RNA_HelixMover.ccconformation / Residue.hh
movers / RNA_HelixMover.ccimport_pose / RNA_BasePairHandler.hh
movers / RNA_HelixMover.cctypes.hh
movers / RNA_HelixMover.ccpose / rna / util.hh
movers / RNA_HelixMover.hhkinematics / FoldTree.hh
movers / RNA_HelixMover.hhpose / Pose.fwd.hh
movers / RNA_HelixMover.hhimport_pose / RNA_BasePairHandler.fwd.hh
movers / RNA_HelixMover.hhtypes.hh
movers / RNA_Minimizer.ccid / AtomID.hh
movers / RNA_Minimizer.ccid / AtomID_Map.hh
movers / RNA_Minimizer.ccpose / toolbox / AtomLevelDomainMap.hh
movers / RNA_Minimizer.ccoptimization / AtomTreeMinimizer.hh
movers / RNA_Minimizer.ccoptimization / CartesianMinimizer.hh
movers / RNA_Minimizer.ccconformation / Conformation.hh
movers / RNA_Minimizer.ccscoring / constraints / ConstraintSet.fwd.hh
movers / RNA_Minimizer.ccscoring / constraints / ConstraintSet.hh
movers / RNA_Minimizer.ccid / DOF_ID.hh
movers / RNA_Minimizer.cckinematics / FoldTree.hh
movers / RNA_Minimizer.ccpose / full_model_info / FullModelInfo.hh
movers / RNA_Minimizer.ccscoring / func / HarmonicFunc.hh
movers / RNA_Minimizer.ccoptimization / MinimizerOptions.hh
movers / RNA_Minimizer.cckinematics / MoveMap.hh
movers / RNA_Minimizer.ccid / NamedAtomID.hh
movers / RNA_Minimizer.ccpack / pack_rotamers.hh
movers / RNA_Minimizer.ccpack / task / PackerTask.hh
movers / RNA_Minimizer.ccpose / Pose.hh
movers / RNA_Minimizer.ccconformation / Residue.hh
movers / RNA_Minimizer.ccimport_pose / libraries / RNA_ChunkLibrary.hh
movers / RNA_Minimizer.ccimport_pose / options / RNA_MinimizerOptions.hh
movers / RNA_Minimizer.ccpack / rotamer_trials.hh
movers / RNA_Minimizer.ccscoring / ScoreFunction.fwd.hh
movers / RNA_Minimizer.ccscoring / ScoreFunction.hh
movers / RNA_Minimizer.ccscoring / ScoreFunctionFactory.hh
movers / RNA_Minimizer.ccscoring / ScoreType.hh
movers / RNA_Minimizer.ccpack / task / TaskFactory.hh
movers / RNA_Minimizer.ccid / TorsionID.hh
movers / RNA_Minimizer.cctypes.hh
movers / RNA_Minimizer.ccscoring / constraints / util.hh
movers / RNA_Minimizer.ccpose / rna / util.hh
movers / RNA_Minimizer.ccpose / util.hh
movers / RNA_Minimizer.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
movers / RNA_Minimizer.hhkinematics / MoveMap.fwd.hh
movers / RNA_Minimizer.hhpose / Pose.fwd.hh
movers / RNA_Minimizer.hhimport_pose / options / RNA_MinimizerOptions.hh
movers / RNA_Minimizer.hhscoring / ScoreFunction.hh
movers / RNA_Relaxer.ccscoring / constraints / ConstraintSet.hh
movers / RNA_Relaxer.cckinematics / Jump.hh
movers / RNA_Relaxer.ccpose / Pose.hh
movers / RNA_Relaxer.ccscoring / rms_util.hh
movers / RNA_Relaxer.ccscoring / ScoreFunction.fwd.hh
movers / RNA_Relaxer.ccscoring / ScoreFunction.hh
movers / RNA_Relaxer.ccscoring / ScoreFunctionFactory.hh
movers / RNA_Relaxer.ccscoring / ScoreType.hh
movers / RNA_Relaxer.cctypes.hh
movers / RNA_Relaxer.hhpose / Pose.fwd.hh
movers / RNA_Relaxer.hhtypes.hh
movers / RNP_HighResMover.ccscoring / constraints / ConstraintSet.hh
movers / RNP_HighResMover.ccscoring / Energies.hh
movers / RNP_HighResMover.cckinematics / Jump.hh
movers / RNP_HighResMover.cckinematics / MoveMap.hh
movers / RNP_HighResMover.ccpack / pack_rotamers.hh
movers / RNP_HighResMover.ccpack / task / PackerTask.hh
movers / RNP_HighResMover.ccpose / Pose.hh
movers / RNP_HighResMover.ccconformation / Residue.hh
movers / RNP_HighResMover.ccscoring / rms_util.hh
movers / RNP_HighResMover.ccimport_pose / options / RNA_FragmentMonteCarloOptions.fwd.hh
movers / RNP_HighResMover.ccpack / rotamer_trials.hh
movers / RNP_HighResMover.ccscoring / ScoreFunction.fwd.hh
movers / RNP_HighResMover.ccscoring / ScoreFunction.hh
movers / RNP_HighResMover.ccscoring / ScoreFunctionFactory.hh
movers / RNP_HighResMover.ccscoring / ScoreType.hh
movers / RNP_HighResMover.ccpack / task / TaskFactory.hh
movers / RNP_HighResMover.cctypes.hh
movers / RNP_HighResMover.hhkinematics / FoldTree.hh
movers / RNP_HighResMover.hhpose / Pose.fwd.hh
movers / RNP_HighResMover.hhimport_pose / options / RNA_FragmentMonteCarloOptions.hh
movers / RNP_HighResMover.hhtypes.hh
util.ccpose / annotated_sequence.hh
util.cckinematics / tree / Atom.hh
util.ccid / AtomID.hh
util.ccpose / toolbox / AtomLevelDomainMap.hh
util.ccscoring / constraints / AtomPairConstraint.hh
util.cckinematics / AtomTree.hh
util.ccpose / rna / BasePairStep.hh
util.ccio / silent / BinarySilentStruct.hh
util.ccchemical / ChemicalManager.hh
util.ccscoring / constraints / ConstraintSet.fwd.hh
util.ccscoring / methods / EnergyMethodOptions.hh
util.ccscoring / func / FadeFunc.hh
util.cckinematics / FoldTree.hh
util.ccscoring / func / HarmonicFunc.hh
util.ccscoring / hbonds / HBondOptions.hh
util.ccscoring / hbonds / hbonds.hh
util.ccscoring / hbonds / HBondSet.hh
util.ccimport_pose / import_pose.hh
util.cckinematics / MoveMap.hh
util.ccid / NamedAtomID.hh
util.ccpose / PDBInfo.hh
util.ccpose / Pose.hh
util.ccconformation / Residue.hh
util.ccconformation / ResidueFactory.hh
util.ccimport_pose / libraries / RNA_ChunkLibrary.hh
util.ccchemical / rna / RNA_Info.hh
util.ccfragment / rna / RNA_MatchType.hh
util.ccscoring / rna / RNA_ScoringInfo.hh
util.ccpose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
util.ccscoring / ScoreFunction.hh
util.ccscoring / ScoreFunctionFactory.hh
util.ccio / silent / SilentFileData.hh
util.ccio / silent / SilentFileOptions.hh
util.ccid / TorsionID.hh
util.cctypes.hh
util.ccchemical / rna / util.hh
util.ccpose / rna / util.hh
util.ccpose / variant_util.hh
util.ccchemical / VariantType.hh
util.hhid / AtomID.fwd.hh
util.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
util.hhpose / rna / BasePair.hh
util.hhpose / rna / BasePairStep.fwd.hh
util.hhkinematics / FoldTree.fwd.hh
util.hhkinematics / MoveMap.fwd.hh
util.hhpose / Pose.fwd.hh
util.hhconformation / Residue.fwd.hh
util.hhpose / rna / RNA_BaseDoubletClasses.hh
util.hhscoring / ScoreFunction.fwd.hh
util.hhtypes.hh