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stepwise → core Relation

File in src/protocols/stepwiseIncludes file in src/core
monte_carlo / mover / AddMover.cckinematics / FoldTree.hh
monte_carlo / mover / AddMover.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / mover / AddMover.cckinematics / Jump.hh
monte_carlo / mover / AddMover.ccpose / Pose.hh
monte_carlo / mover / AddMover.ccconformation / ResidueFactory.hh
monte_carlo / mover / AddMover.ccchemical / ResidueTypeSet.hh
monte_carlo / mover / AddMover.ccscoring / ScoreFunction.hh
monte_carlo / mover / AddMover.cctypes.hh
monte_carlo / mover / AddMover.ccpose / full_model_info / util.hh
monte_carlo / mover / AddMover.ccchemical / rna / util.hh
monte_carlo / mover / AddMover.ccpose / variant_util.hh
monte_carlo / mover / AddMover.ccchemical / VariantType.hh
monte_carlo / mover / AddMover.hhpose / Pose.fwd.hh
monte_carlo / mover / AddMover.hhconformation / Residue.fwd.hh
monte_carlo / mover / AddMover.hhchemical / ResidueTypeSet.fwd.hh
monte_carlo / mover / AddMover.hhscoring / ScoreFunction.fwd.hh
monte_carlo / mover / AddMover.hhtypes.hh
monte_carlo / mover / AddOrDeleteMover.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / mover / AddOrDeleteMover.ccpose / Pose.hh
monte_carlo / mover / AddOrDeleteMover.cctypes.hh
monte_carlo / mover / AddOrDeleteMover.ccpose / util.hh
monte_carlo / mover / AddOrDeleteMover.ccpose / full_model_info / util.hh
monte_carlo / mover / AddOrDeleteMover.ccchemical / VariantType.hh
monte_carlo / mover / AddOrDeleteMover.hhpose / Pose.fwd.hh
monte_carlo / mover / AddOrDeleteMover.hhtypes.hh
screener / AlignRMSD_Screener.ccpose / Pose.hh
screener / AlignRMSD_Screener.hhpose / Pose.fwd.hh
screener / AlignRMSD_Screener.hhtypes.hh
screener / AnchorSugarScreener.ccpose / extra_pose_info_util.hh
screener / AnchorSugarScreener.ccpose / Pose.hh
screener / AnchorSugarScreener.hhpose / Pose.fwd.hh
screener / AnchorSugarScreener.hhtypes.hh
screener / BaseCentroidScreener.ccpose / Pose.hh
screener / BaseCentroidScreener.cckinematics / Stub.hh
screener / BaseCentroidScreener.hhpose / Pose.fwd.hh
screener / BaseCentroidScreener.hhkinematics / Stub.fwd.hh
modeler / rna / bulge / BulgeApplyMover.ccpose / Pose.hh
modeler / rna / bulge / BulgeApplyMover.ccscoring / constraints / util.hh
modeler / rna / bulge / BulgeApplyMover.ccpose / rna / util.hh
modeler / rna / bulge / BulgeUnApplyMover.ccpose / Pose.hh
modeler / rna / bulge / BulgeUnApplyMover.ccscoring / constraints / util.hh
modeler / rna / bulge / BulgeUnApplyMover.ccpose / rna / util.hh
screener / CentroidDistanceScreener.ccpose / Pose.hh
screener / CentroidDistanceScreener.ccchemical / rna / util.hh
screener / CentroidDistanceScreener.hhpose / Pose.fwd.hh
screener / CentroidDistanceScreener.hhtypes.hh
modeler / constraint_util.ccscoring / constraints / Constraint.hh
modeler / constraint_util.ccscoring / constraints / ConstraintIO.hh
modeler / constraint_util.ccscoring / constraints / ConstraintSet.hh
modeler / constraint_util.ccscoring / constraints / CoordinateConstraint.hh
modeler / constraint_util.ccpose / Pose.hh
modeler / constraint_util.ccscoring / ScoreFunction.hh
modeler / constraint_util.ccid / SequenceMapping.hh
modeler / constraint_util.ccpose / util.hh
modeler / constraint_util.ccscoring / constraints / util.hh
modeler / constraint_util.hhscoring / constraints / ConstraintSet.fwd.hh
modeler / constraint_util.hhpose / Pose.fwd.hh
modeler / constraint_util.hhscoring / ScoreFunction.fwd.hh
modeler / constraint_util.hhtypes.hh
sampler / copy_dofs / CopyDofStepWiseSampler.ccpose / Pose.hh
sampler / copy_dofs / CopyDofStepWiseSampler.hhpose / Pose.hh
monte_carlo / mover / DeleteMover.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / mover / DeleteMover.ccpose / Pose.hh
monte_carlo / mover / DeleteMover.ccconformation / Residue.hh
monte_carlo / mover / DeleteMover.ccconformation / ResidueFactory.hh
monte_carlo / mover / DeleteMover.ccchemical / ResidueTypeSet.hh
monte_carlo / mover / DeleteMover.ccscoring / ScoreFunction.hh
monte_carlo / mover / DeleteMover.ccpose / full_model_info / SubMotifInfo.hh
monte_carlo / mover / DeleteMover.cctypes.hh
monte_carlo / mover / DeleteMover.ccpose / full_model_info / util.hh
monte_carlo / mover / DeleteMover.ccpose / util.hh
monte_carlo / mover / DeleteMover.ccchemical / VariantType.hh
monte_carlo / mover / DeleteMover.hhpose / Pose.fwd.hh
monte_carlo / mover / DeleteMover.hhscoring / ScoreFunction.fwd.hh
monte_carlo / mover / DeleteMover.hhtypes.hh
sampler / rigid_body / EulerAngles.hhtypes.hh
modeler / rna / rigid_body / FloatingBaseClasses.hhtypes.hh
monte_carlo / mover / FromScratchMover.ccpose / annotated_sequence.hh
monte_carlo / mover / FromScratchMover.ccchemical / ChemicalManager.hh
monte_carlo / mover / FromScratchMover.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / mover / FromScratchMover.ccpose / Pose.hh
monte_carlo / mover / FromScratchMover.ccpose / full_model_info / util.hh
monte_carlo / mover / FromScratchMover.ccchemical / util.hh
monte_carlo / mover / FromScratchMover.ccpose / util.hh
monte_carlo / mover / FromScratchMover.hhpose / Pose.fwd.hh
monte_carlo / mover / FromScratchMover.hhtypes.hh
modeler / protein / InputStreamWithResidueInfo.ccimport_pose / pose_stream / ExtendedPoseInputStream.hh
modeler / protein / InputStreamWithResidueInfo.ccimport_pose / pose_stream / PDBPoseInputStream.hh
modeler / protein / InputStreamWithResidueInfo.ccpose / Pose.hh
modeler / protein / InputStreamWithResidueInfo.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
modeler / protein / InputStreamWithResidueInfo.ccchemical / ResidueType.hh
modeler / protein / InputStreamWithResidueInfo.ccscoring / rms_util.hh
modeler / protein / InputStreamWithResidueInfo.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
modeler / protein / InputStreamWithResidueInfo.cctypes.hh
modeler / protein / InputStreamWithResidueInfo.ccpose / copydofs / util.hh
modeler / protein / InputStreamWithResidueInfo.ccpose / rna / util.hh
modeler / protein / InputStreamWithResidueInfo.ccpose / variant_util.hh
modeler / protein / InputStreamWithResidueInfo.hhpose / Pose.fwd.hh
modeler / protein / InputStreamWithResidueInfo.hhimport_pose / pose_stream / PoseInputStream.fwd.hh
modeler / protein / InputStreamWithResidueInfo.hhchemical / ResidueTypeSet.fwd.hh
modeler / protein / InputStreamWithResidueInfo.hhtypes.hh
sampler / jump / JumpStepWiseSampler.ccpose / Pose.hh
sampler / jump / JumpStepWiseSampler.hhkinematics / Jump.hh
sampler / jump / JumpStepWiseSampler.hhtypes.hh
modeler / protein / MainChainTorsionSet.ccio / silent / BinarySilentStruct.hh
modeler / protein / MainChainTorsionSet.cctypes.hh
modeler / protein / MainChainTorsionSet.hhtypes.hh
modeler / rna / phosphate / MultiPhosphateSampler.cckinematics / FoldTree.hh
modeler / rna / phosphate / MultiPhosphateSampler.ccpose / full_model_info / FullModelInfo.hh
modeler / rna / phosphate / MultiPhosphateSampler.ccpose / Pose.hh
modeler / rna / phosphate / MultiPhosphateSampler.ccconformation / Residue.hh
modeler / rna / phosphate / MultiPhosphateSampler.ccscoring / ScoreFunction.hh
modeler / rna / phosphate / MultiPhosphateSampler.ccid / TorsionID.hh
modeler / rna / phosphate / MultiPhosphateSampler.ccchemical / rna / util.hh
modeler / rna / phosphate / MultiPhosphateSampler.hhpose / Pose.fwd.hh
modeler / rna / phosphate / MultiPhosphateSampler.hhscoring / ScoreFunction.fwd.hh
modeler / rna / phosphate / MultiPhosphateSampler.hhtypes.hh
modeler / rna / o2prime / O2PrimePacker.ccpack / task / PackerTask.hh
modeler / rna / o2prime / O2PrimePacker.ccpack / rotamer_trials.hh
modeler / rna / o2prime / O2PrimePacker.ccscoring / ScoreFunction.hh
modeler / rna / o2prime / O2PrimePacker.ccpack / task / TaskFactory.hh
modeler / rna / o2prime / O2PrimePacker.ccpack / task / operation / TaskOperations.hh
modeler / rna / o2prime / O2PrimePacker.hhpack / task / PackerTask.fwd.hh
modeler / rna / o2prime / O2PrimePacker.hhpose / Pose.hh
modeler / rna / o2prime / O2PrimePacker.hhscoring / ScoreFunction.fwd.hh
modeler / output_util.cckinematics / FoldTree.hh
modeler / output_util.cckinematics / MoveMap.hh
modeler / output_util.ccpose / Pose.hh
modeler / output_util.ccchemical / ResidueType.hh
modeler / output_util.hhkinematics / MoveMap.fwd.hh
modeler / output_util.hhpose / Pose.fwd.hh
modeler / output_util.hhtypes.hh
screener / PackScreener.ccpose / Pose.hh
screener / PackScreener.hhpose / Pose.fwd.hh
screener / PartitionContactScreener.ccscoring / etable / count_pair / CountPairFactory.hh
screener / PartitionContactScreener.ccscoring / etable / count_pair / CountPairFunction.hh
screener / PartitionContactScreener.ccscoring / methods / EnergyMethodOptions.hh
screener / PartitionContactScreener.ccscoring / etable / Etable.hh
screener / PartitionContactScreener.ccscoring / etable / EtableEnergy.hh
screener / PartitionContactScreener.ccpose / Pose.hh
screener / PartitionContactScreener.ccconformation / Residue.hh
screener / PartitionContactScreener.ccscoring / ScoringManager.hh
screener / PartitionContactScreener.hhscoring / methods / EnergyMethodOptions.fwd.hh
screener / PartitionContactScreener.hhscoring / etable / EtableEnergy.fwd.hh
screener / PartitionContactScreener.hhpose / Pose.fwd.hh
screener / PartitionContactScreener.hhtypes.hh
modeler / rna / phosphate / PhosphateMove.hhtypes.hh
modeler / rna / phosphate / PhosphateMover.ccchemical / AtomType.hh
modeler / rna / phosphate / PhosphateMover.ccscoring / Energies.hh
modeler / rna / phosphate / PhosphateMover.cckinematics / FoldTree.hh
modeler / rna / phosphate / PhosphateMover.ccpose / Pose.hh
modeler / rna / phosphate / PhosphateMover.ccconformation / ResidueFactory.hh
modeler / rna / phosphate / PhosphateMover.ccchemical / ResidueType.hh
modeler / rna / phosphate / PhosphateMover.ccchemical / rna / RNA_Info.hh
modeler / rna / phosphate / PhosphateMover.ccchemical / rna / RNA_SamplerUtil.hh
modeler / rna / phosphate / PhosphateMover.ccscoring / ScoreFunction.hh
modeler / rna / phosphate / PhosphateMover.ccid / TorsionID.hh
modeler / rna / phosphate / PhosphateMover.ccchemical / rna / util.hh
modeler / rna / phosphate / PhosphateMover.ccpose / rna / util.hh
modeler / rna / phosphate / PhosphateMover.ccpose / variant_util.hh
modeler / rna / phosphate / PhosphateMover.hhpose / Pose.fwd.hh
modeler / rna / phosphate / PhosphateMover.hhchemical / rna / RNA_FittedTorsionInfo.hh
modeler / rna / phosphate / PhosphateMover.hhscoring / ScoreFunction.fwd.hh
modeler / rna / phosphate / PhosphateMover.hhtypes.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccid / AtomID.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccscoring / hbonds / HBondDatabase.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccscoring / hbonds / HBondOptions.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccscoring / hbonds / hbonds_geom.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccid / NamedAtomID.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccpose / PDBInfo.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccconformation / Residue.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccconformation / ResidueFactory.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccchemical / ResidueType.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccchemical / rna / RNA_Info.hh
modeler / polar_hydrogens / PolarHydrogenPacker.cckinematics / Stub.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccscoring / hbonds / types.hh
modeler / polar_hydrogens / PolarHydrogenPacker.ccpose / variant_util.hh
modeler / polar_hydrogens / PolarHydrogenPacker.hhscoring / hbonds / HBEvalTuple.hh
modeler / polar_hydrogens / PolarHydrogenPacker.hhscoring / hbonds / HBondDatabase.fwd.hh
modeler / polar_hydrogens / PolarHydrogenPacker.hhscoring / hbonds / HBondOptions.fwd.hh
modeler / polar_hydrogens / PolarHydrogenPacker.hhkinematics / Stub.fwd.hh
modeler / polar_hydrogens / PolarHydrogenPacker.hhtypes.hh
screener / PoseSelectionScreener.ccpose / Pose.hh
screener / PoseSelectionScreener.ccscoring / ScoreFunction.hh
screener / PoseSelectionScreener.hhpose / Pose.fwd.hh
screener / PoseSelectionScreener.hhscoring / ScoreFunction.fwd.hh
screener / PoseSelectionScreener.hhtypes.hh
modeler / precomputed / PrecomputedLibraryMover.ccconformation / Conformation.hh
modeler / precomputed / PrecomputedLibraryMover.cckinematics / FoldTree.hh
modeler / precomputed / PrecomputedLibraryMover.ccpose / full_model_info / FullModelInfo.hh
modeler / precomputed / PrecomputedLibraryMover.ccpose / Pose.hh
modeler / precomputed / PrecomputedLibraryMover.ccconformation / Residue.hh
modeler / precomputed / PrecomputedLibraryMover.ccio / silent / SilentFileData.hh
modeler / precomputed / PrecomputedLibraryMover.ccio / silent / SilentFileOptions.hh
modeler / precomputed / PrecomputedLibraryMover.ccio / silent / SilentStruct.hh
modeler / precomputed / PrecomputedLibraryMover.ccpose / full_model_info / util.hh
modeler / precomputed / PrecomputedLibraryMover.ccpose / util.hh
modeler / precomputed / PrecomputedLibraryMover.hhpose / Pose.fwd.hh
modeler / precomputed / PrecomputedLibraryMover.hhio / silent / SilentFileData.fwd.hh
modeler / protein / checker / ProteinAtrRepChecker.ccscoring / Energies.hh
modeler / protein / checker / ProteinAtrRepChecker.ccscoring / methods / EnergyMethodOptions.hh
modeler / protein / checker / ProteinAtrRepChecker.ccscoring / etable / Etable.hh
modeler / protein / checker / ProteinAtrRepChecker.ccscoring / etable / EtableEnergy.hh
modeler / protein / checker / ProteinAtrRepChecker.ccpose / Pose.hh
modeler / protein / checker / ProteinAtrRepChecker.ccscoring / ScoreFunction.hh
modeler / protein / checker / ProteinAtrRepChecker.ccscoring / ScoringManager.hh
modeler / protein / checker / ProteinAtrRepChecker.ccpose / util.hh
modeler / protein / checker / ProteinAtrRepChecker.hhpose / Pose.hh
modeler / protein / checker / ProteinAtrRepChecker.hhscoring / ScoreFunction.fwd.hh
legacy / screener / ProteinAtrRepScreener.ccpose / Pose.hh
legacy / screener / ProteinAtrRepScreener.hhpose / Pose.fwd.hh
sampler / protein / ProteinBetaAntiParallelStepWiseSampler.cckinematics / FoldTree.hh
sampler / protein / ProteinBetaAntiParallelStepWiseSampler.cckinematics / Jump.hh
sampler / protein / ProteinBetaAntiParallelStepWiseSampler.ccpose / Pose.hh
sampler / protein / ProteinFragmentStepWiseSampler.ccfragment / ConstantLengthFragSet.hh
sampler / protein / ProteinFragmentStepWiseSampler.ccfragment / FragSet.hh
sampler / protein / ProteinFragmentStepWiseSampler.ccfragment / Frame.hh
sampler / protein / ProteinFragmentStepWiseSampler.ccfragment / FrameList.hh
sampler / protein / ProteinFragmentStepWiseSampler.ccfragment / util.hh
sampler / protein / ProteinFragmentStepWiseSampler.hhfragment / Frame.fwd.hh
sampler / protein / ProteinFragmentStepWiseSampler.hhpose / Pose.fwd.hh
sampler / protein / ProteinFragmentStepWiseSampler.hhtypes.hh
sampler / protein / ProteinMainChainStepWiseSampler.ccpose / Pose.hh
sampler / protein / ProteinMainChainStepWiseSampler.ccid / TorsionID.hh
sampler / protein / ProteinMainChainStepWiseSampler.hhid / TorsionID.fwd.hh
sampler / protein / ProteinMainChainStepWiseSampler.hhtypes.hh
monte_carlo / mover / ResampleMover.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / mover / ResampleMover.ccpose / Pose.hh
monte_carlo / mover / ResampleMover.ccscoring / ScoreFunction.hh
monte_carlo / mover / ResampleMover.ccpose / full_model_info / util.hh
monte_carlo / mover / ResampleMover.ccchemical / rna / util.hh
monte_carlo / mover / ResampleMover.hhpose / Pose.fwd.hh
monte_carlo / mover / ResampleMover.hhscoring / ScoreFunction.fwd.hh
monte_carlo / mover / ResampleMover.hhtypes.hh
sampler / copy_dofs / ResidueAlternativeSet.ccpose / Pose.hh
sampler / copy_dofs / ResidueAlternativeSet.hhpose / Pose.fwd.hh
sampler / copy_dofs / ResidueAlternativeSet.hhtypes.hh
sampler / copy_dofs / ResidueAlternativeStepWiseSampler.ccpose / Pose.hh
sampler / copy_dofs / ResidueAlternativeStepWiseSampler.ccconformation / Residue.hh
sampler / copy_dofs / ResidueAlternativeStepWiseSampler.hhpose / Pose.hh
sampler / copy_dofs / ResidueAlternativeStepWiseSampler.hhconformation / Residue.fwd.hh
sampler / copy_dofs / ResidueAlternativeStepWiseSamplerComb.hhconformation / Residue.fwd.hh
screener / ResidueContactScreener.hhpose / Pose.fwd.hh
screener / ResidueContactScreener.hhtypes.hh
sampler / copy_dofs / ResidueListStepWiseSampler.ccconformation / Residue.hh
sampler / copy_dofs / ResidueListStepWiseSampler.hhconformation / Residue.fwd.hh
sampler / rigid_body / RigidBodyStepWiseSampler.cckinematics / tree / Atom.hh
sampler / rigid_body / RigidBodyStepWiseSampler.ccid / AtomID.hh
sampler / rigid_body / RigidBodyStepWiseSampler.cckinematics / AtomTree.hh
sampler / rigid_body / RigidBodyStepWiseSampler.cckinematics / Jump.hh
sampler / rigid_body / RigidBodyStepWiseSampler.ccpose / Pose.hh
sampler / rigid_body / RigidBodyStepWiseSampler.cckinematics / Stub.hh
sampler / rigid_body / RigidBodyStepWiseSampler.hhid / AtomID.hh
sampler / rigid_body / RigidBodyStepWiseSampler.hhkinematics / Jump.hh
sampler / rigid_body / RigidBodyStepWiseSampler.hhconformation / Residue.hh
sampler / rigid_body / RigidBodyStepWiseSampler.hhkinematics / Stub.hh
sampler / rigid_body / RigidBodyStepWiseSampler.hhtypes.hh
sampler / rigid_body / RigidBodyStepWiseSamplerValueRange.hhtypes.hh
sampler / rigid_body / RigidBodyStepWiseSamplerWithResidueAlternatives.ccpose / Pose.hh
sampler / rigid_body / RigidBodyStepWiseSamplerWithResidueList.hhconformation / Residue.fwd.hh
sampler / rigid_body / RigidBodyStepWiseSamplerWithResidueList.hhkinematics / Stub.fwd.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccio / silent / BinarySilentStruct.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccpose / Pose.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccconformation / Residue.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccscoring / rms_util.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccscoring / ScoreFunction.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccio / silent / SilentFileData.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccio / silent / SilentFileOptions.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccio / silent / SilentStruct.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccid / types.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.cctypes.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccpose / full_model_info / util.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccpose / util.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.ccchemical / VariantType.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.hhpose / Pose.fwd.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.hhscoring / ScoreFunction.fwd.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.hhio / silent / SilentFileData.fwd.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.hhio / silent / SilentFileOptions.fwd.hh
monte_carlo / rna / RNA_AddDeleteMonteCarlo.hhtypes.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.cckinematics / tree / Atom.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.ccid / AtomID.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.cckinematics / AtomTree.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.ccid / DOF_ID.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.cckinematics / FoldTree.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.ccid / NamedAtomID.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.ccpose / Pose.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.ccconformation / Residue.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.ccchemical / ResidueType.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.ccchemical / rna / RNA_Info.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.ccscoring / ScoreFunction.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.cctypes.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.ccchemical / VariantType.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.hhkinematics / tree / Atom.fwd.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.hhid / DOF_ID.fwd.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.hhid / NamedAtomID.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.hhpose / Pose.fwd.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.hhscoring / ScoreFunction.hh
legacy / modeler / rna / RNA_AnalyticLoopCloser.hhtypes.hh
modeler / rna / checker / RNA_AtrRepChecker.ccscoring / Energies.hh
modeler / rna / checker / RNA_AtrRepChecker.ccscoring / methods / EnergyMethodOptions.hh
modeler / rna / checker / RNA_AtrRepChecker.ccscoring / etable / Etable.hh
modeler / rna / checker / RNA_AtrRepChecker.ccscoring / etable / EtableEnergy.hh
modeler / rna / checker / RNA_AtrRepChecker.ccpose / Pose.hh
modeler / rna / checker / RNA_AtrRepChecker.ccscoring / ScoreFunction.hh
modeler / rna / checker / RNA_AtrRepChecker.ccscoring / ScoringManager.hh
modeler / rna / checker / RNA_AtrRepChecker.ccpose / variant_util.hh
modeler / rna / checker / RNA_AtrRepChecker.hhscoring / methods / EnergyMethodOptions.fwd.hh
modeler / rna / checker / RNA_AtrRepChecker.hhpose / Pose.hh
modeler / rna / checker / RNA_AtrRepChecker.hhscoring / ScoreFunction.fwd.hh
legacy / screener / RNA_AtrRepScreener.ccpose / Pose.hh
legacy / screener / RNA_AtrRepScreener.hhpose / Pose.fwd.hh
modeler / rna / checker / RNA_BaseCentroidChecker.cckinematics / FoldTree.hh
modeler / rna / checker / RNA_BaseCentroidChecker.ccpose / Pose.hh
modeler / rna / checker / RNA_BaseCentroidChecker.ccconformation / Residue.hh
modeler / rna / checker / RNA_BaseCentroidChecker.ccscoring / rna / RNA_CentroidInfo.hh
modeler / rna / checker / RNA_BaseCentroidChecker.cckinematics / Stub.hh
modeler / rna / checker / RNA_BaseCentroidChecker.ccid / TorsionID.hh
modeler / rna / checker / RNA_BaseCentroidChecker.hhpose / Pose.fwd.hh
modeler / rna / checker / RNA_BaseCentroidChecker.hhscoring / rna / RNA_CentroidInfo.fwd.hh
modeler / rna / checker / RNA_BaseCentroidChecker.hhkinematics / Stub.hh
modeler / rna / checker / RNA_BaseCentroidChecker.hhtypes.hh
modeler / rna / checker / RNA_BaseCentroidChecker.hhchemical / rna / util.hh
modeler / rna / checker / RNA_ChainClosableGeometryChecker.ccpose / Pose.hh
modeler / rna / checker / RNA_ChainClosableGeometryChecker.ccconformation / Residue.hh
modeler / rna / checker / RNA_ChainClosableGeometryChecker.cckinematics / Stub.hh
modeler / rna / checker / RNA_ChainClosableGeometryChecker.hhpose / Pose.fwd.hh
modeler / rna / checker / RNA_ChainClosableGeometryChecker.hhconformation / Residue.fwd.hh
modeler / rna / checker / RNA_ChainClosableGeometryChecker.hhkinematics / Stub.fwd.hh
modeler / rna / checker / RNA_ChainClosableGeometryChecker.hhtypes.hh
screener / RNA_ChainClosableGeometryResidueBasedScreener.hhconformation / Residue.hh
screener / RNA_ChainClosableGeometryScreener.ccpose / Pose.hh
screener / RNA_ChainClosableGeometryScreener.hhpose / Pose.fwd.hh
screener / RNA_ChainClosableGeometryStubBasedScreener.ccpose / Pose.hh
screener / RNA_ChainClosableGeometryStubBasedScreener.ccconformation / Residue.hh
screener / RNA_ChainClosableGeometryStubBasedScreener.cckinematics / Stub.hh
screener / RNA_ChainClosableGeometryStubBasedScreener.hhpose / Pose.fwd.hh
screener / RNA_ChainClosableGeometryStubBasedScreener.hhconformation / Residue.fwd.hh
screener / RNA_ChainClosableGeometryStubBasedScreener.hhkinematics / Stub.fwd.hh
modeler / rna / checker / RNA_ChainClosureChecker.ccscoring / Energies.hh
modeler / rna / checker / RNA_ChainClosureChecker.ccconformation / Residue.hh
modeler / rna / checker / RNA_ChainClosureChecker.ccscoring / ScoreFunction.hh
modeler / rna / checker / RNA_ChainClosureChecker.ccscoring / ScoreType.hh
modeler / rna / checker / RNA_ChainClosureChecker.ccid / TorsionID.hh
modeler / rna / checker / RNA_ChainClosureChecker.ccchemical / VariantType.hh
modeler / rna / checker / RNA_ChainClosureChecker.hhpose / Pose.hh
modeler / rna / checker / RNA_ChainClosureChecker.hhscoring / ScoreFunction.fwd.hh
screener / RNA_ChainClosureScreener.ccpose / Pose.hh
screener / RNA_ChainClosureScreener.hhpose / Pose.fwd.hh
sampler / rna / RNA_ChiStepWiseSampler.ccchemical / rna / RNA_SamplerUtil.hh
sampler / rna / RNA_ChiStepWiseSampler.ccid / TorsionID.hh
sampler / rna / RNA_ChiStepWiseSampler.ccchemical / rna / util.hh
sampler / rna / RNA_ChiStepWiseSampler.hhchemical / rna / RNA_FittedTorsionInfo.hh
sampler / rna / RNA_ChiStepWiseSampler.hhchemical / rna / util.hh
sampler / rna / RNA_KIC_Sampler.ccpose / Pose.hh
sampler / rna / RNA_KIC_Sampler.ccchemical / rna / RNA_SamplerUtil.hh
sampler / rna / RNA_KIC_Sampler.ccpose / rna / RNA_SuiteName.hh
sampler / rna / RNA_KIC_Sampler.ccid / TorsionID.hh
sampler / rna / RNA_KIC_Sampler.ccpose / rna / util.hh
sampler / rna / RNA_KIC_Sampler.hhchemical / rna / util.hh
sampler / rna / RNA_KinematicCloser.ccid / AtomID.hh
sampler / rna / RNA_KinematicCloser.cckinematics / AtomTree.hh
sampler / rna / RNA_KinematicCloser.ccid / DOF_ID.hh
sampler / rna / RNA_KinematicCloser.ccid / NamedAtomID.hh
sampler / rna / RNA_KinematicCloser.ccpose / Pose.hh
sampler / rna / RNA_KinematicCloser.ccconformation / Residue.hh
sampler / rna / RNA_KinematicCloser.ccchemical / ResidueType.hh
sampler / rna / RNA_KinematicCloser.ccchemical / rna / RNA_Info.hh
sampler / rna / RNA_KinematicCloser.cctypes.hh
sampler / rna / RNA_KinematicCloser.hhid / DOF_ID.fwd.hh
sampler / rna / RNA_KinematicCloser.hhid / NamedAtomID.fwd.hh
sampler / rna / RNA_NucleosideStepWiseSampler.ccid / TorsionID.hh
sampler / rna / RNA_NucleosideStepWiseSampler.ccchemical / rna / util.hh
sampler / rna / RNA_NucleosideStepWiseSampler.hhchemical / rna / RNA_FittedTorsionInfo.fwd.hh
sampler / rna / RNA_NucleosideStepWiseSampler.hhchemical / rna / util.hh
monte_carlo / rna / RNA_O2PrimeMover.ccscoring / Energies.hh
monte_carlo / rna / RNA_O2PrimeMover.ccscoring / EnergyGraph.hh
monte_carlo / rna / RNA_O2PrimeMover.ccpose / Pose.hh
monte_carlo / rna / RNA_O2PrimeMover.ccscoring / ScoreFunction.hh
monte_carlo / rna / RNA_O2PrimeMover.ccid / TorsionID.hh
monte_carlo / rna / RNA_O2PrimeMover.cctypes.hh
monte_carlo / rna / RNA_O2PrimeMover.ccpose / full_model_info / util.hh
monte_carlo / rna / RNA_O2PrimeMover.ccpose / util.hh
monte_carlo / rna / RNA_O2PrimeMover.ccchemical / VariantType.hh
monte_carlo / rna / RNA_O2PrimeMover.hhpose / Pose.fwd.hh
monte_carlo / rna / RNA_O2PrimeMover.hhscoring / ScoreFunction.fwd.hh
monte_carlo / rna / RNA_O2PrimeMover.hhtypes.hh
sampler / rna / RNA_SugarStepWiseSampler.ccpose / Pose.hh
sampler / rna / RNA_SugarStepWiseSampler.ccconformation / Residue.hh
sampler / rna / RNA_SugarStepWiseSampler.ccchemical / rna / RNA_FittedTorsionInfo.hh
sampler / rna / RNA_SugarStepWiseSampler.ccpose / rna / RNA_IdealCoord.hh
sampler / rna / RNA_SugarStepWiseSampler.ccid / TorsionID.hh
sampler / rna / RNA_SugarStepWiseSampler.ccpose / rna / util.hh
sampler / rna / RNA_SugarStepWiseSampler.hhid / DOF_ID_Map.hh
sampler / rna / RNA_SugarStepWiseSampler.hhchemical / rna / util.hh
sampler / rna / RNA_SuiteStepWiseSampler.ccchemical / rna / RNA_FittedTorsionInfo.hh
sampler / rna / RNA_SuiteStepWiseSampler.ccchemical / rna / RNA_SamplerUtil.hh
sampler / rna / RNA_SuiteStepWiseSampler.ccid / TorsionID.hh
sampler / rna / RNA_SuiteStepWiseSampler.ccpose / rna / util.hh
sampler / rna / RNA_SuiteStepWiseSampler.hhchemical / rna / RNA_FittedTorsionInfo.fwd.hh
sampler / rna / RNA_SuiteStepWiseSampler.hhchemical / rna / util.hh
monte_carlo / rna / RNA_TorsionMover.ccpose / Pose.hh
monte_carlo / rna / RNA_TorsionMover.ccconformation / ResidueFactory.hh
monte_carlo / rna / RNA_TorsionMover.ccchemical / ResidueTypeSet.hh
monte_carlo / rna / RNA_TorsionMover.ccid / TorsionID.hh
monte_carlo / rna / RNA_TorsionMover.cctypes.hh
monte_carlo / rna / RNA_TorsionMover.ccchemical / rna / util.hh
monte_carlo / rna / RNA_TorsionMover.ccpose / util.hh
monte_carlo / rna / RNA_TorsionMover.ccpose / full_model_info / util.hh
monte_carlo / rna / RNA_TorsionMover.ccchemical / VariantType.hh
monte_carlo / rna / RNA_TorsionMover.hhpose / Pose.fwd.hh
monte_carlo / rna / RNA_TorsionMover.hhchemical / rna / RNA_FittedTorsionInfo.hh
monte_carlo / rna / RNA_TorsionMover.hhtypes.hh
sampler / screener / RNA_TorsionScreener.ccpose / Pose.hh
sampler / screener / RNA_TorsionScreener.ccconformation / Residue.hh
sampler / screener / RNA_TorsionScreener.ccpose / rna / RNA_SuiteName.hh
sampler / screener / RNA_TorsionScreener.ccchemical / rna / util.hh
sampler / screener / RNA_TorsionScreener.hhpose / Pose.fwd.hh
sampler / screener / RNA_TorsionScreener.hhpose / rna / RNA_SuiteName.fwd.hh
sampler / screener / RNA_TorsionScreener.hhtypes.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccid / AtomID_Map.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccchemical / AtomType.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccchemical / ChemicalManager.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccpose / full_model_info / FullModelInfo.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccimport_pose / import_pose.hh
modeler / rna / checker / RNA_VDW_BinChecker.cckinematics / MoveMap.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccpose / PDBInfo.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccpose / Pose.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccconformation / Residue.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccconformation / ResidueFactory.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccchemical / ResidueTypeSet.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccscoring / rms_util.tmpl.hh
modeler / rna / checker / RNA_VDW_BinChecker.cctypes.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccpose / rna / util.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccpose / util.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccchemical / rna / util.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccchemical / util.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccchemical / VariantType.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccpose / rna / VDW_Grid.hh
modeler / rna / checker / RNA_VDW_BinChecker.ccpose / rna / VDW_RepScreenInfo.hh
modeler / rna / checker / RNA_VDW_BinChecker.hhchemical / AA.hh
modeler / rna / checker / RNA_VDW_BinChecker.hhkinematics / FoldTree.fwd.hh
modeler / rna / checker / RNA_VDW_BinChecker.hhpose / Pose.fwd.hh
modeler / rna / checker / RNA_VDW_BinChecker.hhpose / Pose.hh
modeler / rna / checker / RNA_VDW_BinChecker.hhconformation / Residue.hh
modeler / rna / checker / RNA_VDW_BinChecker.hhtypes.hh
modeler / rna / checker / RNA_VDW_BinChecker.hhpose / rna / VDW_Grid.hh
modeler / rna / checker / RNA_VDW_BinChecker.hhpose / rna / VDW_RepScreenInfo.hh
screener / SampleApplier.ccpose / Pose.hh
screener / SampleApplier.ccconformation / Residue.hh
screener / SampleApplier.hhpose / Pose.hh
screener / SampleApplier.hhconformation / Residue.fwd.hh
screener / Scorer.ccpose / Pose.hh
screener / Scorer.ccscoring / ScoreFunction.hh
screener / Scorer.hhpose / Pose.fwd.hh
screener / Scorer.hhscoring / ScoreFunction.fwd.hh
modeler / scoring_util.ccscoring / methods / EnergyMethodOptions.hh
modeler / scoring_util.ccscoring / etable / EtableOptions.hh
modeler / scoring_util.ccpose / Pose.hh
modeler / scoring_util.ccscoring / ScoreFunction.hh
modeler / scoring_util.ccscoring / ScoreFunctionFactory.hh
modeler / scoring_util.hhpose / Pose.fwd.hh
modeler / scoring_util.hhscoring / ScoreFunction.fwd.hh
modeler / packer / SideChainCopier.ccconformation / Conformation.hh
modeler / packer / SideChainCopier.ccpose / Pose.hh
modeler / packer / SideChainCopier.ccchemical / ResidueType.hh
modeler / packer / SideChainCopier.ccid / TorsionID.hh
modeler / packer / SideChainCopier.ccscoring / constraints / util.hh
modeler / packer / SideChainCopier.ccpose / copydofs / util.hh
legacy / screener / SimplePoseSelection.ccpose / Pose.hh
legacy / screener / SimplePoseSelection.hhpose / Pose.hh
legacy / screener / SimpleRMSD_Screener.ccpose / Pose.hh
legacy / screener / SimpleRMSD_Screener.ccscoring / rms_util.hh
legacy / screener / SimpleRMSD_Screener.ccscoring / rms_util.tmpl.hh
legacy / screener / SimpleRMSD_Screener.hhid / AtomID.fwd.hh
legacy / screener / SimpleRMSD_Screener.hhpose / Pose.fwd.hh
legacy / screener / SimpleRMSD_Screener.hhtypes.hh
modeler / options / StepWiseBasicModelerOptions.hhtypes.hh
options / StepWiseBasicOptions.hhtypes.hh
modeler / working_parameters / StepWiseBasicWorkingParameters.ccpose / Pose.hh
modeler / working_parameters / StepWiseBasicWorkingParameters.hhpose / Pose.fwd.hh
modeler / working_parameters / StepWiseBasicWorkingParameters.hhtypes.hh
modeler / align / StepWiseClusterer.ccpose / extra_pose_info_util.hh
modeler / align / StepWiseClusterer.ccpose / Pose.hh
modeler / align / StepWiseClusterer.ccpose / util.hh
modeler / align / StepWiseClusterer.hhpose / Pose.hh
modeler / align / StepWiseClusterer.hhtypes.hh
modeler / StepWiseConnectionSampler.ccid / AtomID.hh
modeler / StepWiseConnectionSampler.ccscoring / methods / EnergyMethodOptions.hh
modeler / StepWiseConnectionSampler.ccpose / Pose.hh
modeler / StepWiseConnectionSampler.ccscoring / ScoreFunction.hh
modeler / StepWiseConnectionSampler.ccscoring / ScoreType.hh
modeler / StepWiseConnectionSampler.cckinematics / Stub.hh
modeler / StepWiseConnectionSampler.ccid / TorsionID.hh
modeler / StepWiseConnectionSampler.cctypes.hh
modeler / StepWiseConnectionSampler.ccpose / full_model_info / util.hh
modeler / StepWiseConnectionSampler.ccpose / rna / util.hh
modeler / StepWiseConnectionSampler.ccchemical / rna / util.hh
modeler / StepWiseConnectionSampler.ccpose / variant_util.hh
modeler / StepWiseConnectionSampler.hhpose / Pose.fwd.hh
modeler / StepWiseConnectionSampler.hhconformation / Residue.fwd.hh
modeler / StepWiseConnectionSampler.hhscoring / ScoreFunction.hh
modeler / StepWiseConnectionSampler.hhio / silent / SilentFileData.fwd.hh
modeler / StepWiseConnectionSampler.hhkinematics / Stub.hh
modeler / align / StepWiseLegacyClusterer.ccid / AtomID.hh
modeler / align / StepWiseLegacyClusterer.ccchemical / ChemicalManager.hh
modeler / align / StepWiseLegacyClusterer.ccpose / extra_pose_info_util.hh
modeler / align / StepWiseLegacyClusterer.ccpose / Pose.hh
modeler / align / StepWiseLegacyClusterer.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
modeler / align / StepWiseLegacyClusterer.ccimport_pose / pose_stream / PoseInputStream.hh
modeler / align / StepWiseLegacyClusterer.ccchemical / ResidueTypeSet.hh
modeler / align / StepWiseLegacyClusterer.ccscoring / rms_util.hh
modeler / align / StepWiseLegacyClusterer.ccio / silent / SilentFileData.hh
modeler / align / StepWiseLegacyClusterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
modeler / align / StepWiseLegacyClusterer.ccio / silent / SilentStruct.hh
modeler / align / StepWiseLegacyClusterer.ccpose / subpose_manipulation_util.hh
modeler / align / StepWiseLegacyClusterer.cctypes.hh
modeler / align / StepWiseLegacyClusterer.ccpose / util.hh
modeler / align / StepWiseLegacyClusterer.hhpose / Pose.hh
modeler / align / StepWiseLegacyClusterer.hhchemical / ResidueTypeSet.fwd.hh
modeler / align / StepWiseLegacyClusterer.hhscoring / ScoreFunction.fwd.hh
modeler / align / StepWiseLegacyClusterer.hhio / silent / SilentFileData.fwd.hh
modeler / align / StepWiseLegacyClusterer.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
modeler / align / StepWiseLegacyClusterer.hhio / silent / SilentStruct.fwd.hh
modeler / align / StepWiseLegacyClusterer.hhtypes.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccchemical / ChemicalManager.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccpose / extra_pose_info_util.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccpose / Pose.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccimport_pose / pose_stream / PoseInputStream.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccchemical / ResidueTypeSet.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccscoring / rms_util.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccio / silent / SilentFileData.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccio / silent / SilentFileOptions.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccio / silent / SilentStruct.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccpose / subpose_manipulation_util.hh
modeler / align / StepWiseLegacyClustererSilentBased.cctypes.hh
modeler / align / StepWiseLegacyClustererSilentBased.ccpose / util.hh
modeler / align / StepWiseLegacyClustererSilentBased.hhid / AtomID.hh
modeler / align / StepWiseLegacyClustererSilentBased.hhpose / Pose.fwd.hh
modeler / align / StepWiseLegacyClustererSilentBased.hhchemical / ResidueTypeSet.fwd.hh
modeler / align / StepWiseLegacyClustererSilentBased.hhscoring / ScoreFunction.fwd.hh
modeler / align / StepWiseLegacyClustererSilentBased.hhio / silent / SilentFileData.fwd.hh
modeler / align / StepWiseLegacyClustererSilentBased.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
modeler / align / StepWiseLegacyClustererSilentBased.hhio / silent / SilentStruct.fwd.hh
modeler / align / StepWiseLegacyClustererSilentBased.hhtypes.hh
monte_carlo / mover / StepWiseMasterMover.ccid / AtomID.hh
monte_carlo / mover / StepWiseMasterMover.ccchemical / ChemicalManager.hh
monte_carlo / mover / StepWiseMasterMover.ccpose / extra_pose_info_util.hh
monte_carlo / mover / StepWiseMasterMover.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / mover / StepWiseMasterMover.ccpose / PDBInfo.hh
monte_carlo / mover / StepWiseMasterMover.ccimport_pose / pose_stream / PDBPoseInputStream.hh
monte_carlo / mover / StepWiseMasterMover.ccpose / Pose.hh
monte_carlo / mover / StepWiseMasterMover.ccchemical / ResidueTypeSet.hh
monte_carlo / mover / StepWiseMasterMover.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
monte_carlo / mover / StepWiseMasterMover.ccpose / full_model_info / util.hh
monte_carlo / mover / StepWiseMasterMover.ccpose / variant_util.hh
monte_carlo / mover / StepWiseMasterMover.hhscoring / ScoreFunction.fwd.hh
monte_carlo / mover / StepWiseMasterMover.hhtypes.hh
modeler / packer / StepWiseMasterPacker.ccscoring / Energies.hh
modeler / packer / StepWiseMasterPacker.ccscoring / methods / EnergyMethodOptions.hh
modeler / packer / StepWiseMasterPacker.ccscoring / ScoreFunction.hh
modeler / packer / StepWiseMasterPacker.hhpose / Pose.fwd.hh
modeler / packer / StepWiseMasterPacker.hhscoring / ScoreFunction.hh
modeler / packer / StepWiseMasterPacker.hhtypes.hh
modeler / StepWiseMinimizer.ccid / AtomID.hh
modeler / StepWiseMinimizer.ccoptimization / AtomTreeMinimizer.hh
modeler / StepWiseMinimizer.ccoptimization / CartesianMinimizer.hh
modeler / StepWiseMinimizer.ccscoring / constraints / ConstraintSet.hh
modeler / StepWiseMinimizer.ccscoring / Energies.hh
modeler / StepWiseMinimizer.ccscoring / EnergyGraph.hh
modeler / StepWiseMinimizer.ccscoring / EnergyMap.hh
modeler / StepWiseMinimizer.ccpose / extra_pose_info_util.hh
modeler / StepWiseMinimizer.ccpose / full_model_info / FullModelInfo.hh
modeler / StepWiseMinimizer.ccoptimization / MinimizerOptions.hh
modeler / StepWiseMinimizer.cckinematics / MoveMap.hh
modeler / StepWiseMinimizer.ccpose / Pose.hh
modeler / StepWiseMinimizer.ccscoring / ScoreFunction.hh
modeler / StepWiseMinimizer.ccpose / rna / util.hh
modeler / StepWiseMinimizer.ccpose / util.hh
modeler / StepWiseMinimizer.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
modeler / StepWiseMinimizer.hhoptimization / AtomTreeMinimizer.fwd.hh
modeler / StepWiseMinimizer.hhoptimization / CartesianMinimizer.fwd.hh
modeler / StepWiseMinimizer.hhoptimization / MinimizerOptions.fwd.hh
modeler / StepWiseMinimizer.hhkinematics / MoveMap.fwd.hh
modeler / StepWiseMinimizer.hhpose / Pose.hh
modeler / StepWiseMinimizer.hhscoring / ScoreFunction.hh
modeler / StepWiseModeler.ccscoring / constraints / ConstraintIO.hh
modeler / StepWiseModeler.ccscoring / constraints / ConstraintSet.hh
modeler / StepWiseModeler.ccpose / full_model_info / FullModelInfo.hh
modeler / StepWiseModeler.ccpose / Pose.hh
modeler / StepWiseModeler.ccscoring / ScoreFunction.hh
modeler / StepWiseModeler.ccpose / full_model_info / util.hh
modeler / StepWiseModeler.ccpose / variant_util.hh
modeler / StepWiseModeler.hhscoring / constraints / ConstraintSet.fwd.hh
modeler / StepWiseModeler.hhkinematics / MoveMap.fwd.hh
modeler / StepWiseModeler.hhpose / Pose.fwd.hh
modeler / StepWiseModeler.hhscoring / ScoreFunction.fwd.hh
monte_carlo / StepWiseMonteCarlo.ccscoring / Energies.hh
monte_carlo / StepWiseMonteCarlo.ccscoring / EnergyGraph.hh
monte_carlo / StepWiseMonteCarlo.ccscoring / EnergyMap.fwd.hh
monte_carlo / StepWiseMonteCarlo.ccscoring / EnergyMap.hh
monte_carlo / StepWiseMonteCarlo.ccpose / extra_pose_info_util.hh
monte_carlo / StepWiseMonteCarlo.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / StepWiseMonteCarlo.ccpose / Pose.hh
monte_carlo / StepWiseMonteCarlo.ccchemical / ResidueType.hh
monte_carlo / StepWiseMonteCarlo.ccscoring / ScoreFunction.hh
monte_carlo / StepWiseMonteCarlo.ccio / silent / SilentFileData.hh
monte_carlo / StepWiseMonteCarlo.ccio / silent / SilentFileOptions.hh
monte_carlo / StepWiseMonteCarlo.ccio / silent / util.hh
monte_carlo / StepWiseMonteCarlo.ccpose / full_model_info / util.hh
monte_carlo / StepWiseMonteCarlo.ccpose / util.hh
monte_carlo / StepWiseMonteCarlo.ccpose / rna / util.hh
monte_carlo / StepWiseMonteCarlo.hhpose / Pose.fwd.hh
monte_carlo / StepWiseMonteCarlo.hhscoring / ScoreFunction.fwd.hh
monte_carlo / StepWiseMonteCarlo.hhtypes.hh
monte_carlo / options / StepWiseMonteCarloOptions.hhtypes.hh
monte_carlo / mover / StepWiseMove.ccpose / full_model_info / FullModelParameters.hh
monte_carlo / mover / StepWiseMove.hhpose / full_model_info / FullModelParameters.fwd.hh
monte_carlo / mover / StepWiseMove.hhtypes.hh
monte_carlo / mover / StepWiseMoveSelector.cckinematics / FoldTree.hh
monte_carlo / mover / StepWiseMoveSelector.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / mover / StepWiseMoveSelector.ccscoring / loop_graph / LoopGraph.hh
monte_carlo / mover / StepWiseMoveSelector.ccpose / Pose.hh
monte_carlo / mover / StepWiseMoveSelector.ccpose / full_model_info / SubMotifInfo.hh
monte_carlo / mover / StepWiseMoveSelector.cctypes.hh
monte_carlo / mover / StepWiseMoveSelector.ccpose / util.hh
monte_carlo / mover / StepWiseMoveSelector.ccpose / full_model_info / util.hh
monte_carlo / mover / StepWiseMoveSelector.ccchemical / rna / util.hh
monte_carlo / mover / StepWiseMoveSelector.ccchemical / VariantType.hh
monte_carlo / mover / StepWiseMoveSelector.hhpose / Pose.fwd.hh
monte_carlo / mover / options / StepWiseMoveSelectorOptions.hhtypes.hh
modeler / packer / StepWisePacker.ccscoring / Energies.hh
modeler / packer / StepWisePacker.ccscoring / EnergyGraph.hh
modeler / packer / StepWisePacker.ccpack / pack_rotamers.hh
modeler / packer / StepWisePacker.ccpack / task / PackerTask.hh
modeler / packer / StepWisePacker.ccpose / Pose.hh
modeler / packer / StepWisePacker.ccconformation / Residue.hh
modeler / packer / StepWisePacker.ccpack / rotamer_trials.hh
modeler / packer / StepWisePacker.ccscoring / ScoreFunction.hh
modeler / packer / StepWisePacker.ccscoring / ScoreFunctionFactory.hh
modeler / packer / StepWisePacker.ccio / silent / SilentFileData.fwd.hh
modeler / packer / StepWisePacker.ccio / silent / SilentFileData.hh
modeler / packer / StepWisePacker.ccpack / task / TaskFactory.hh
modeler / packer / StepWisePacker.ccpack / task / operation / TaskOperations.hh
modeler / packer / StepWisePacker.cctypes.hh
modeler / packer / StepWisePacker.ccpose / util.hh
modeler / packer / StepWisePacker.hhpack / task / PackerTask.fwd.hh
modeler / packer / StepWisePacker.hhpose / Pose.fwd.hh
modeler / packer / StepWisePacker.hhscoring / ScoreFunction.fwd.hh
modeler / packer / StepWisePacker.hhtypes.hh
modeler / align / StepWisePoseAligner.cckinematics / tree / Atom.hh
modeler / align / StepWisePoseAligner.cckinematics / AtomTree.hh
modeler / align / StepWisePoseAligner.ccscoring / constraints / ConstraintSet.hh
modeler / align / StepWisePoseAligner.ccscoring / constraints / CoordinateConstraint.hh
modeler / align / StepWisePoseAligner.ccscoring / func / FlatHarmonicFunc.hh
modeler / align / StepWisePoseAligner.cckinematics / FoldTree.hh
modeler / align / StepWisePoseAligner.ccpose / full_model_info / FullModelInfo.hh
modeler / align / StepWisePoseAligner.ccpose / full_model_info / FullModelParameters.hh
modeler / align / StepWisePoseAligner.ccpose / Pose.hh
modeler / align / StepWisePoseAligner.ccconformation / Residue.hh
modeler / align / StepWisePoseAligner.ccchemical / ResidueType.hh
modeler / align / StepWisePoseAligner.ccscoring / rms_util.hh
modeler / align / StepWisePoseAligner.ccpose / rna / util.hh
modeler / align / StepWisePoseAligner.ccpose / full_model_info / util.hh
modeler / align / StepWisePoseAligner.ccconformation / util.hh
modeler / align / StepWisePoseAligner.ccchemical / rna / util.hh
modeler / align / StepWisePoseAligner.ccchemical / VariantType.hh
modeler / align / StepWisePoseAligner.hhid / AtomID.hh
modeler / align / StepWisePoseAligner.hhpose / Pose.fwd.hh
modeler / align / StepWisePoseAligner.hhtypes.hh
modeler / protein / StepWiseProteinBackboneSampler.ccpose / annotated_sequence.hh
modeler / protein / StepWiseProteinBackboneSampler.ccid / AtomID.hh
modeler / protein / StepWiseProteinBackboneSampler.ccchemical / ChemicalManager.hh
modeler / protein / StepWiseProteinBackboneSampler.ccscoring / dssp / Dssp.hh
modeler / protein / StepWiseProteinBackboneSampler.ccscoring / Energies.hh
modeler / protein / StepWiseProteinBackboneSampler.cckinematics / Jump.hh
modeler / protein / StepWiseProteinBackboneSampler.ccpose / Pose.hh
modeler / protein / StepWiseProteinBackboneSampler.ccio / silent / ProteinSilentStruct.hh
modeler / protein / StepWiseProteinBackboneSampler.ccscoring / Ramachandran.hh
modeler / protein / StepWiseProteinBackboneSampler.ccscoring / RamaPrePro.hh
modeler / protein / StepWiseProteinBackboneSampler.ccscoring / rms_util.tmpl.hh
modeler / protein / StepWiseProteinBackboneSampler.ccscoring / ScoreFunction.hh
modeler / protein / StepWiseProteinBackboneSampler.ccscoring / ScoreFunctionFactory.hh
modeler / protein / StepWiseProteinBackboneSampler.ccscoring / ScoreType.hh
modeler / protein / StepWiseProteinBackboneSampler.ccscoring / ScoringManager.hh
modeler / protein / StepWiseProteinBackboneSampler.ccio / silent / SilentFileData.fwd.hh
modeler / protein / StepWiseProteinBackboneSampler.ccio / silent / SilentFileData.hh
modeler / protein / StepWiseProteinBackboneSampler.ccutil / SwitchResidueTypeSet.hh
modeler / protein / StepWiseProteinBackboneSampler.ccid / TorsionID.hh
modeler / protein / StepWiseProteinBackboneSampler.cctypes.hh
modeler / protein / StepWiseProteinBackboneSampler.ccpose / rna / util.hh
modeler / protein / StepWiseProteinBackboneSampler.ccpose / full_model_info / util.hh
modeler / protein / StepWiseProteinBackboneSampler.ccpose / variant_util.hh
modeler / protein / StepWiseProteinBackboneSampler.hhkinematics / FoldTree.fwd.hh
modeler / protein / StepWiseProteinBackboneSampler.hhpose / Pose.fwd.hh
modeler / protein / StepWiseProteinBackboneSampler.hhscoring / Ramachandran.fwd.hh
modeler / protein / StepWiseProteinBackboneSampler.hhscoring / RamaPrePro.fwd.hh
modeler / protein / StepWiseProteinBackboneSampler.hhscoring / ScoreFunction.fwd.hh
modeler / protein / StepWiseProteinBackboneSampler.hhid / TorsionID.fwd.hh
modeler / protein / StepWiseProteinBackboneSampler.hhtypes.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.ccid / AtomID.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.cckinematics / Jump.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.ccpose / Pose.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.ccconformation / Residue.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.ccchemical / ResidueType.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.ccid / TorsionID.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.cctypes.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.ccchemical / VariantType.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.hhkinematics / MoveMap.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.hhpose / Pose.fwd.hh
modeler / protein / loop_close / StepWiseProteinCCD_Closer.hhid / TorsionID.hh
modeler / protein / loop_close / StepWiseProteinCCD_MultiPoseCloser.ccpose / Pose.hh
modeler / protein / loop_close / StepWiseProteinCCD_MultiPoseCloser.hhpose / Pose.fwd.hh
modeler / protein / loop_close / StepWiseProteinCCD_MultiPoseCloser.hhid / TorsionID.fwd.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.cckinematics / FoldTree.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.cckinematics / Jump.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.ccpose / Pose.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.ccscoring / Ramachandran.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.ccconformation / Residue.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.ccchemical / ResidueConnection.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.ccio / silent / SilentFileData.fwd.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.ccid / TorsionID.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.cctypes.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.ccpose / rna / util.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.ccchemical / VariantType.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.hhpose / Pose.fwd.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.hhscoring / Ramachandran.hh
modeler / protein / loop_close / StepWiseProteinKIC_LoopBridger.hhid / TorsionID.fwd.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccoptimization / AtomTreeMinimizer.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccoptimization / CartesianMinimizer.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccconformation / Conformation.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccscoring / constraints / ConstraintSet.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccscoring / Energies.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccscoring / EnergyGraph.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccoptimization / MinimizerOptions.hh
legacy / modeler / protein / StepWiseProteinMinimizer.cckinematics / MoveMap.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccpose / Pose.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccscoring / ScoreFunction.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccscoring / ScoreFunctionFactory.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccid / TorsionID.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccscoring / constraints / util.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccpose / util.hh
legacy / modeler / protein / StepWiseProteinMinimizer.ccconformation / util.hh
legacy / modeler / protein / StepWiseProteinMinimizer.hhkinematics / MoveMap.fwd.hh
legacy / modeler / protein / StepWiseProteinMinimizer.hhpose / Pose.hh
legacy / modeler / protein / StepWiseProteinMinimizer.hhscoring / ScoreFunction.fwd.hh
legacy / modeler / protein / StepWiseProteinMinimizer.hhtypes.hh
modeler / options / StepWiseProteinModelerOptions.hhtypes.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccpose / annotated_sequence.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccscoring / constraints / AtomPairConstraint.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccchemical / ChemicalManager.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccconformation / Conformation.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccscoring / constraints / ConstraintIO.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccscoring / constraints / ConstraintSet.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccio / raw_data / DisulfideFile.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccscoring / func / FadeFunc.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.cckinematics / FoldTree.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccpose / full_model_info / FullModelInfo.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccpose / full_model_info / FullModelParameters.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccscoring / func / Func.fwd.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccimport_pose / import_pose.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccpose / Pose.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccconformation / Residue.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccconformation / ResidueFactory.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccchemical / ResidueType.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccscoring / rms_util.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccscoring / ScoreFunction.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccscoring / ScoreType.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccpose / subpose_manipulation_util.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccid / TorsionID.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.cctypes.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccchemical / rna / util.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccpose / rna / util.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccpose / variant_util.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.ccchemical / VariantType.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.hhid / AtomID.fwd.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.hhid / AtomID_Map.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.hhscoring / constraints / ConstraintSet.fwd.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.hhpose / Pose.fwd.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.hhconformation / Residue.fwd.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.hhchemical / ResidueType.fwd.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.hhchemical / ResidueTypeSet.fwd.hh
legacy / modeler / protein / StepWiseProteinPoseSetup.hhtypes.hh
modeler / rna / StepWiseRNA_Classes.hhpose / Pose.fwd.hh
modeler / rna / StepWiseRNA_Classes.hhscoring / ScoreFunction.fwd.hh
modeler / rna / StepWiseRNA_Classes.hhio / silent / SilentFileData.fwd.hh
modeler / rna / StepWiseRNA_Classes.hhid / TorsionID.hh
modeler / rna / StepWiseRNA_Classes.hhtypes.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccio / silent / BinarySilentStruct.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccchemical / ChemicalManager.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccscoring / Energies.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccpose / extra_pose_info_util.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccpose / Pose.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccimport_pose / pose_stream / PoseInputStream.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccchemical / ResidueTypeSet.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccscoring / rms_util.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccscoring / rms_util.tmpl.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccscoring / ScoreFunction.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccscoring / ScoreFunctionFactory.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccio / silent / SilentFileData.fwd.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccio / silent / SilentFileData.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccio / silent / SilentFileOptions.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccio / silent / SilentStruct.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.cctypes.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccchemical / rna / util.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccpose / rna / util.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.ccpose / util.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.hhpose / Pose.fwd.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.hhpose / Pose.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.hhchemical / ResidueTypeSet.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.hhscoring / ScoreFunction.fwd.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.hhio / silent / SilentFileData.fwd.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.hhio / silent / SilentStruct.fwd.hh
legacy / modeler / rna / StepWiseRNA_Clusterer.hhtypes.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / constraints / AtomPairConstraint.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / AtomType.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / ChemicalManager.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / constraints / ConstraintSet.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / extra_pose_info_util.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.cckinematics / FoldTree.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / import_pose.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / Pose.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / PoseInputStream.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccconformation / Residue.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / ResidueTypeSet.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / rms_util.tmpl.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccid / TorsionID.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.cctypes.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / util.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / util.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / util.tmpl.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / VariantType.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.hhpose / Pose.fwd.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.hhchemical / ResidueTypeSet.fwd.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
modeler / rna / StepWiseRNA_CombineLongLoopFilterer.hhtypes.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccid / AtomID.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccoptimization / AtomTreeMinimizer.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccchemical / AtomType.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccio / silent / BinarySilentStruct.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccoptimization / CartesianMinimizer.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccconformation / Conformation.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccscoring / Energies.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccscoring / EnergyGraph.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccscoring / EnergyMap.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccoptimization / MinimizerOptions.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccpose / Pose.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccscoring / rms_util.tmpl.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccscoring / rna / RNA_TorsionPotential.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccscoring / ScoreFunction.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccscoring / ScoreFunctionFactory.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccscoring / ScoreType.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccio / silent / SilentFileData.fwd.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccio / silent / SilentFileData.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccid / TorsionID.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.cctypes.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccchemical / util.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccchemical / rna / util.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccpose / util.hh
legacy / modeler / rna / StepWiseRNA_Minimizer.ccchemical / VariantType.hh
modeler / options / StepWiseRNA_ModelerOptions.hhtypes.hh
modeler / rna / StepWiseRNA_OutputData.ccscoring / constraints / AngleConstraint.hh
modeler / rna / StepWiseRNA_OutputData.ccscoring / constraints / AtomPairConstraint.hh
modeler / rna / StepWiseRNA_OutputData.ccoptimization / AtomTreeMinimizer.hh
modeler / rna / StepWiseRNA_OutputData.ccchemical / AtomType.hh
modeler / rna / StepWiseRNA_OutputData.ccio / silent / BinarySilentStruct.hh
modeler / rna / StepWiseRNA_OutputData.ccchemical / ChemicalManager.hh
modeler / rna / StepWiseRNA_OutputData.ccscoring / constraints / ConstraintSet.fwd.hh
modeler / rna / StepWiseRNA_OutputData.ccscoring / constraints / ConstraintSet.hh
modeler / rna / StepWiseRNA_OutputData.cckinematics / MoveMap.hh
modeler / rna / StepWiseRNA_OutputData.ccpack / pack_rotamers.hh
modeler / rna / StepWiseRNA_OutputData.ccpack / task / PackerTask.hh
modeler / rna / StepWiseRNA_OutputData.ccpose / Pose.hh
modeler / rna / StepWiseRNA_OutputData.ccconformation / Residue.hh
modeler / rna / StepWiseRNA_OutputData.ccchemical / ResidueTypeSet.hh
modeler / rna / StepWiseRNA_OutputData.ccscoring / rms_util.tmpl.hh
modeler / rna / StepWiseRNA_OutputData.ccpose / rna / RNA_BaseDoubletClasses.hh
modeler / rna / StepWiseRNA_OutputData.ccpose / rna / RNA_BasePairClassifier.hh
modeler / rna / StepWiseRNA_OutputData.ccchemical / rna / RNA_FittedTorsionInfo.hh
modeler / rna / StepWiseRNA_OutputData.ccpack / rotamer_trials.hh
modeler / rna / StepWiseRNA_OutputData.ccscoring / ScoreFunction.hh
modeler / rna / StepWiseRNA_OutputData.ccscoring / ScoreType.hh
modeler / rna / StepWiseRNA_OutputData.ccio / silent / SilentFileData.hh
modeler / rna / StepWiseRNA_OutputData.ccio / silent / SilentFileOptions.hh
modeler / rna / StepWiseRNA_OutputData.ccpack / task / TaskFactory.hh
modeler / rna / StepWiseRNA_OutputData.cctypes.hh
modeler / rna / StepWiseRNA_OutputData.ccscoring / constraints / util.hh
modeler / rna / StepWiseRNA_OutputData.ccchemical / util.hh
modeler / rna / StepWiseRNA_OutputData.ccchemical / VariantType.hh
modeler / rna / StepWiseRNA_OutputData.hhchemical / AA.hh
modeler / rna / StepWiseRNA_OutputData.hhio / silent / BinarySilentStruct.hh
modeler / rna / StepWiseRNA_OutputData.hhkinematics / FoldTree.fwd.hh
modeler / rna / StepWiseRNA_OutputData.hhoptimization / MinimizerOptions.hh
modeler / rna / StepWiseRNA_OutputData.hhkinematics / MoveMap.hh
modeler / rna / StepWiseRNA_OutputData.hhpose / Pose.fwd.hh
modeler / rna / StepWiseRNA_OutputData.hhconformation / Residue.hh
modeler / rna / StepWiseRNA_OutputData.hhio / silent / RNA_SilentStruct.hh
modeler / rna / StepWiseRNA_OutputData.hhscoring / ScoreFunction.fwd.hh
modeler / rna / StepWiseRNA_OutputData.hhio / silent / SilentFileData.hh
modeler / rna / StepWiseRNA_OutputData.hhtypes.hh
legacy / modeler / rna / StepWiseRNA_PoseSelection.ccpose / extra_pose_info_util.hh
legacy / modeler / rna / StepWiseRNA_PoseSelection.ccpose / Pose.hh
legacy / modeler / rna / StepWiseRNA_PoseSelection.ccscoring / ScoreFunction.hh
legacy / modeler / rna / StepWiseRNA_PoseSelection.ccscoring / ScoreType.hh
legacy / modeler / rna / StepWiseRNA_PoseSelection.ccpose / rna / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSelection.ccpose / variant_util.hh
legacy / modeler / rna / StepWiseRNA_PoseSelection.hhpose / Pose.fwd.hh
legacy / modeler / rna / StepWiseRNA_PoseSelection.hhtypes.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccpose / annotated_sequence.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccscoring / constraints / AtomPairConstraint.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccio / silent / BinarySilentStruct.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccchemical / ChemicalManager.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccscoring / constraints / ConstraintSet.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccscoring / func / FadeFunc.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.cckinematics / FoldTree.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccpose / full_model_info / FullModelInfo.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccpose / full_model_info / FullModelParameters.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccscoring / func / Func.fwd.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccimport_pose / import_pose.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccpose / PDBInfo.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccpose / Pose.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccconformation / Residue.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccconformation / ResidueFactory.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccchemical / ResidueType.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccchemical / ResidueTypeSet.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccscoring / rms_util.tmpl.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccid / TorsionID.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.cctypes.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccpose / rna / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccpose / copydofs / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccpose / full_model_info / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccchemical / rna / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccchemical / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccpose / variant_util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.ccchemical / VariantType.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.hhpose / Pose.fwd.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.hhchemical / ResidueTypeSet.fwd.hh
legacy / modeler / rna / StepWiseRNA_PoseSetup.hhtypes.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccchemical / AA.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.cckinematics / tree / Atom.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccid / AtomID.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccid / AtomID_Map.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccoptimization / AtomTreeMinimizer.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / func / CharmmPeriodicFunc.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccchemical / ChemicalManager.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccconformation / Conformation.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / constraints / DihedralConstraint.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccid / DOF_ID.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / Energies.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / EnergyGraph.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / EnergyMap.fwd.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / EnergyMap.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.cckinematics / FoldTree.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccimport_pose / import_pose.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccinit / init.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccoptimization / MinimizerOptions.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccpose / MiniPose.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.cckinematics / MoveMap.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccpose / PDBInfo.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccpose / Pose.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccconformation / Residue.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccconformation / ResidueFactory.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccconformation / ResidueMatcher.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccchemical / ResidueTypeSet.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / rms_util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccchemical / rna / RNA_FittedTorsionInfo.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / ScoreFunction.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / ScoreFunctionFactory.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccscoring / ScoringManager.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccsequence / Sequence.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccio / silent / SilentFileData.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccio / silent / SilentStruct.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.cctypes.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccio / silent / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccpose / rna / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccpose / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccsequence / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccchemical / rna / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccchemical / util.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.ccchemical / VariantType.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.hhpose / Pose.fwd.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.hhscoring / ScoreFunction.fwd.hh
legacy / modeler / rna / StepWiseRNA_PoseSetupFromCommandLine.hhtypes.hh
modeler / rna / StepWiseRNA_ResidueInfo.ccchemical / AtomType.hh
modeler / rna / StepWiseRNA_ResidueInfo.ccconformation / Conformation.hh
modeler / rna / StepWiseRNA_ResidueInfo.ccpose / Pose.fwd.hh
modeler / rna / StepWiseRNA_ResidueInfo.ccpose / Pose.hh
modeler / rna / StepWiseRNA_ResidueInfo.ccconformation / Residue.hh
modeler / rna / StepWiseRNA_ResidueInfo.hhpose / Pose.fwd.hh
modeler / rna / StepWiseRNA_ResidueInfo.hhtypes.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccscoring / constraints / AtomPairConstraint.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccchemical / ChemicalManager.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccscoring / constraints / ConstraintSet.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccscoring / func / FadeFunc.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.cckinematics / FoldTree.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccpose / Pose.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccconformation / Residue.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccchemical / ResidueTypeFinder.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccchemical / ResidueTypeSet.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccscoring / rms_util.tmpl.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccid / TorsionID.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.cctypes.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccpose / rna / util.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccpose / util.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccchemical / rna / util.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccchemical / util.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.ccchemical / VariantType.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.hhpose / Pose.fwd.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.hhchemical / ResidueTypeSet.fwd.hh
legacy / modeler / rna / StepWiseRNA_WorkingParametersSetup.hhtypes.hh
StepWiseSampleAndScreen.hhtypes.hh
sampler / StepWiseSamplerComb.ccpose / Pose.hh
sampler / StepWiseSamplerOneDOF.ccpose / Pose.hh
sampler / StepWiseSamplerOneDOF.hhid / AtomID.hh
sampler / StepWiseSamplerOneDOF.hhid / DOF_ID.hh
sampler / StepWiseSamplerOneTorsion.ccpose / Pose.hh
sampler / StepWiseSamplerOneTorsion.hhid / TorsionID.hh
sampler / StepWiseSamplerOneValue.ccpose / Pose.hh
sampler / StepWiseSamplerRingConformer.ccpose / Pose.hh
sampler / StepWiseSamplerRingConformer.ccchemical / rings / RingConformer.hh
sampler / StepWiseSamplerRingConformer.ccchemical / rings / RingConformerSet.hh
sampler / StepWiseSamplerRingConformer.hhchemical / rings / RingConformer.hh
sampler / StepWiseSamplerRingConformer.hhchemical / rings / RingConformerSet.fwd.hh
sampler / StepWiseSamplerRingConformer.hhid / TorsionID.hh
sampler / StepWiseSamplerSized.ccpose / Pose.hh
sampler / StepWiseSamplerSizedAny.ccpose / Pose.hh
sampler / StepWiseSamplerSizedComb.ccpose / Pose.hh
screener / StepWiseScreener.hhtypes.hh
modeler / working_parameters / StepWiseWorkingParameters.cckinematics / FoldTree.hh
modeler / working_parameters / StepWiseWorkingParameters.ccpose / rna / util.hh
modeler / working_parameters / StepWiseWorkingParameters.hhkinematics / FoldTree.hh
modeler / working_parameters / StepWiseWorkingParameters.hhpose / Pose.fwd.hh
screener / StubApplier.hhkinematics / Stub.hh
screener / StubDistanceScreener.hhkinematics / Stub.hh
monte_carlo / submotif / SubMotifLibrary.ccchemical / AA.hh
monte_carlo / submotif / SubMotifLibrary.ccpose / annotated_sequence.hh
monte_carlo / submotif / SubMotifLibrary.ccchemical / ChemicalManager.hh
monte_carlo / submotif / SubMotifLibrary.ccpose / extra_pose_info_util.hh
monte_carlo / submotif / SubMotifLibrary.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / submotif / SubMotifLibrary.ccimport_pose / import_pose.hh
monte_carlo / submotif / SubMotifLibrary.cckinematics / Jump.hh
monte_carlo / submotif / SubMotifLibrary.ccpose / Pose.hh
monte_carlo / submotif / SubMotifLibrary.ccchemical / ResidueTypeFinder.hh
monte_carlo / submotif / SubMotifLibrary.ccchemical / ResidueTypeSet.hh
monte_carlo / submotif / SubMotifLibrary.ccimport_pose / libraries / RNA_JumpLibrary.hh
monte_carlo / submotif / SubMotifLibrary.ccimport_pose / libraries / RNA_LibraryManager.hh
monte_carlo / submotif / SubMotifLibrary.ccpose / full_model_info / util.hh
monte_carlo / submotif / SubMotifLibrary.ccpose / rna / util.hh
monte_carlo / submotif / SubMotifLibrary.ccpose / variant_util.hh
monte_carlo / submotif / SubMotifLibrary.hhpose / Pose.fwd.hh
monte_carlo / submotif / SubMotifLibrary.hhchemical / ResidueTypeSet.fwd.hh
modeler / rna / sugar / SugarInstantiateMover.ccpose / Pose.hh
modeler / rna / sugar / SugarInstantiateMover.ccconformation / Residue.hh
modeler / rna / sugar / SugarInstantiateMover.ccchemical / types.hh
modeler / rna / sugar / SugarInstantiateMover.ccpose / variant_util.hh
screener / SugarInstantiator.ccconformation / Residue.hh
screener / SugarInstantiator.ccpose / rna / util.hh
modeler / rna / sugar / SugarModeling.ccpose / Pose.hh
modeler / rna / sugar / SugarModeling.cctypes.hh
modeler / rna / sugar / SugarModeling.ccchemical / rna / util.hh
modeler / rna / sugar / SugarModeling.ccpose / util.hh
modeler / rna / sugar / SugarModeling.hhpose / Pose.fwd.hh
modeler / rna / sugar / SugarModeling.hhtypes.hh
modeler / rna / sugar / SugarModeling.hhchemical / rna / util.hh
modeler / rna / sugar / SugarVirtualizeMover.ccpose / Pose.hh
modeler / rna / sugar / SugarVirtualizeMover.ccconformation / Residue.hh
modeler / rna / sugar / SugarVirtualizeMover.ccchemical / types.hh
modeler / rna / sugar / SugarVirtualizeMover.ccpose / variant_util.hh
screener / TagDefinition.ccpose / extra_pose_info_util.hh
screener / TagDefinition.ccpose / Pose.hh
screener / TagDefinition.ccconformation / Residue.hh
screener / TagDefinition.hhpose / Pose.fwd.hh
screener / TagDefinition.hhtypes.hh
monte_carlo / mover / TransientCutpointHandler.ccpose / Pose.hh
monte_carlo / mover / TransientCutpointHandler.ccscoring / ScoreFunction.hh
monte_carlo / mover / TransientCutpointHandler.ccid / TorsionID.hh
monte_carlo / mover / TransientCutpointHandler.cctypes.hh
monte_carlo / mover / TransientCutpointHandler.ccpose / rna / util.hh
monte_carlo / mover / TransientCutpointHandler.ccchemical / rna / util.hh
monte_carlo / mover / TransientCutpointHandler.ccpose / variant_util.hh
monte_carlo / mover / TransientCutpointHandler.ccchemical / VariantType.hh
monte_carlo / mover / TransientCutpointHandler.hhkinematics / FoldTree.hh
monte_carlo / mover / TransientCutpointHandler.hhpose / Pose.fwd.hh
monte_carlo / mover / TransientCutpointHandler.hhtypes.hh
modeler / rna / util.ccscoring / constraints / AngleConstraint.hh
modeler / rna / rigid_body / util.ccscoring / constraints / AngleConstraint.hh
sampler / protein / util.ccpose / annotated_sequence.hh
modeler / rna / util.ccid / AtomID.hh
legacy / modeler / protein / util.ccid / AtomID.hh
modeler / protein / util.ccid / AtomID.hh
modeler / util.ccid / AtomID.hh
modeler / rna / util.ccid / AtomID_Map.hh
legacy / modeler / protein / util.ccid / AtomID_Map.hh
modeler / protein / util.ccid / AtomID_Map.hh
modeler / util.ccid / AtomID_Map.hh
modeler / working_parameters / util.ccpose / toolbox / AtomLevelDomainMap.hh
modeler / rna / util.ccpose / toolbox / AtomLevelDomainMap.hh
modeler / rna / util.ccscoring / constraints / AtomPairConstraint.hh
modeler / rna / rigid_body / util.ccscoring / constraints / AtomPairConstraint.hh
modeler / rna / sugar / util.ccoptimization / AtomTreeMinimizer.hh
modeler / rna / util.ccoptimization / AtomTreeMinimizer.hh
modeler / rna / util.ccchemical / AtomType.hh
modeler / rna / rigid_body / util.ccchemical / AtomType.hh
legacy / modeler / protein / util.ccio / silent / BinarySilentStruct.hh
sampler / protein / util.ccio / silent / BinarySilentStruct.hh
monte_carlo / util.ccio / silent / BinarySilentStruct.hh
modeler / util.ccpose / datacache / CacheableDataType.hh
modeler / util.ccscoring / methods / chainbreak_util.hh
legacy / modeler / rna / util.ccchemical / ChemicalManager.hh
modeler / rna / util.ccchemical / ChemicalManager.hh
modeler / rna / rigid_body / util.ccchemical / ChemicalManager.hh
sampler / protein / util.ccchemical / ChemicalManager.hh
modeler / rna / util.ccscoring / func / CircularSplineFunc.hh
modeler / movemap / util.ccconformation / Conformation.hh
modeler / util.ccconformation / Conformation.hh
modeler / protein / util.ccfragment / ConstantLengthFragSet.hh
modeler / rna / rigid_body / util.ccscoring / constraints / ConstraintSet.fwd.hh
modeler / rna / util.ccscoring / constraints / ConstraintSet.hh
modeler / rna / rigid_body / util.ccscoring / constraints / ConstraintSet.hh
modeler / util.ccscoring / constraints / ConstraintSet.hh
modeler / rna / util.ccscoring / constraints / DihedralConstraint.hh
modeler / util.cckinematics / Edge.hh
modeler / packer / util.ccscoring / Energies.hh
modeler / util.ccscoring / Energies.hh
modeler / packer / util.ccscoring / EnergyGraph.hh
modeler / rna / phosphate / util.ccscoring / methods / EnergyMethodOptions.hh
modeler / rna / sugar / util.ccpose / extra_pose_info_util.hh
monte_carlo / util.ccpose / extra_pose_info_util.hh
modeler / util.ccpose / extra_pose_info_util.hh
modeler / rna / util.ccscoring / func / FadeFunc.hh
modeler / working_parameters / util.cckinematics / FoldTree.hh
modeler / protein / util.ccfragment / FragData.hh
modeler / protein / util.ccfragment / FragSet.hh
legacy / modeler / protein / util.ccfragment / Frame.hh
modeler / protein / util.ccfragment / Frame.hh
modeler / protein / util.ccfragment / FrameList.hh
modeler / working_parameters / util.ccpose / full_model_info / FullModelInfo.hh
modeler / rna / util.ccpose / full_model_info / FullModelInfo.hh
sampler / rna / util.ccpose / full_model_info / FullModelInfo.hh
modeler / protein / util.ccpose / full_model_info / FullModelInfo.hh
modeler / movemap / util.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / util.ccpose / full_model_info / FullModelInfo.hh
modeler / util.ccpose / full_model_info / FullModelInfo.hh
modeler / align / util.ccpose / full_model_info / FullModelInfo.hh
modeler / working_parameters / util.ccpose / full_model_info / FullModelParameters.hh
modeler / rna / util.ccscoring / func / HarmonicFunc.hh
modeler / util.ccscoring / func / HarmonicFunc.hh
sampler / protein / util.ccscoring / hbonds / HBondOptions.hh
sampler / protein / util.ccscoring / hbonds / hbonds.hh
sampler / protein / util.ccscoring / hbonds / HBondSet.hh
modeler / rna / util.ccimport_pose / import_pose.hh
sampler / protein / util.ccimport_pose / import_pose.hh
modeler / util.ccimport_pose / import_pose.hh
modeler / util.ccscoring / loop_graph / LoopGraph.hh
modeler / rna / sugar / util.ccoptimization / MinimizerOptions.hh
modeler / rna / rigid_body / util.ccoptimization / MinimizerOptions.hh
modeler / working_parameters / util.cckinematics / MoveMap.hh
modeler / rna / sugar / util.cckinematics / MoveMap.hh
modeler / rna / util.cckinematics / MoveMap.hh
modeler / movemap / util.cckinematics / MoveMap.hh
modeler / util.cckinematics / MoveMap.hh
legacy / modeler / protein / util.ccid / NamedAtomID.hh
modeler / protein / util.ccid / NamedAtomID.hh
sampler / protein / util.ccid / NamedAtomID.hh
modeler / rna / phosphate / util.ccid / NamedAtomID.hh
modeler / movemap / util.ccid / NamedAtomID.hh
modeler / rna / util.ccpack / pack_rotamers.hh
modeler / rna / util.ccpack / task / PackerTask.hh
modeler / rna / sugar / util.ccpose / PDBInfo.hh
modeler / util.ccpose / PDBInfo.hh
modeler / working_parameters / util.ccpose / Pose.hh
modeler / rna / sugar / util.ccpose / Pose.hh
legacy / modeler / rna / util.ccpose / Pose.hh
modeler / rna / util.ccpose / Pose.hh
sampler / rna / util.ccpose / Pose.hh
modeler / rna / rigid_body / util.ccpose / Pose.hh
legacy / modeler / protein / util.ccpose / Pose.hh
modeler / protein / util.ccpose / Pose.hh
sampler / protein / util.ccpose / Pose.hh
modeler / polar_hydrogens / util.ccpose / Pose.hh
modeler / rna / phosphate / util.ccpose / Pose.hh
modeler / packer / util.ccpose / Pose.hh
modeler / movemap / util.ccpose / Pose.hh
monte_carlo / util.ccpose / Pose.hh
modeler / util.ccpose / Pose.hh
modeler / protein / loop_close / util.ccpose / Pose.hh
modeler / align / util.ccpose / Pose.hh
legacy / modeler / rna / util.ccconformation / Residue.hh
modeler / rna / util.ccconformation / Residue.hh
modeler / rna / rigid_body / util.ccconformation / Residue.hh
modeler / packer / util.ccconformation / Residue.hh
modeler / movemap / util.ccconformation / Residue.hh
modeler / util.ccconformation / Residue.hh
modeler / rna / util.ccconformation / ResidueFactory.hh
modeler / rna / rigid_body / util.ccconformation / ResidueFactory.hh
modeler / rna / phosphate / util.ccconformation / ResidueFactory.hh
modeler / rna / util.ccchemical / ResidueProperties.hh
modeler / rna / util.ccchemical / ResidueType.hh
sampler / rna / util.ccchemical / ResidueType.hh
modeler / polar_hydrogens / util.ccchemical / ResidueType.hh
modeler / packer / util.ccchemical / ResidueType.hh
modeler / movemap / util.ccchemical / ResidueType.hh
modeler / rna / util.ccchemical / ResidueTypeSet.hh
modeler / rna / rigid_body / util.ccchemical / ResidueTypeSet.hh
modeler / rna / phosphate / util.ccchemical / ResidueTypeSet.hh
modeler / util.ccchemical / ResidueTypeSet.hh
legacy / modeler / protein / util.ccscoring / rms_util.hh
modeler / protein / util.ccscoring / rms_util.hh
monte_carlo / util.ccscoring / rms_util.hh
modeler / align / util.ccscoring / rms_util.hh
modeler / rna / util.ccscoring / rms_util.tmpl.hh
modeler / rna / rigid_body / util.ccscoring / rms_util.tmpl.hh
modeler / rna / util.ccpose / rna / RNA_BaseDoubletClasses.hh
modeler / rna / util.ccpose / rna / RNA_BasePairClassifier.hh
modeler / util.ccscoring / rna / RNA_CentroidInfo.hh
legacy / modeler / rna / util.ccchemical / rna / RNA_FittedTorsionInfo.hh
modeler / rna / rigid_body / util.ccchemical / rna / RNA_FittedTorsionInfo.hh
modeler / packer / util.ccchemical / rna / RNA_Info.hh
modeler / util.ccscoring / rna / RNA_ScoringInfo.hh
modeler / util.ccpose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
modeler / rna / rigid_body / util.ccscoring / rna / RNA_TorsionPotential.hh
modeler / rna / util.ccpack / rotamer_trials.hh
modeler / rna / sugar / util.ccscoring / ScoreFunction.hh
modeler / rna / util.ccscoring / ScoreFunction.hh
modeler / rna / rigid_body / util.ccscoring / ScoreFunction.hh
sampler / protein / util.ccscoring / ScoreFunction.hh
modeler / rna / phosphate / util.ccscoring / ScoreFunction.hh
modeler / packer / util.ccscoring / ScoreFunction.hh
monte_carlo / util.ccscoring / ScoreFunction.hh
modeler / util.ccscoring / ScoreFunction.hh
modeler / rna / sugar / util.ccscoring / ScoreFunctionFactory.hh
sampler / protein / util.ccscoring / ScoreFunctionFactory.hh
modeler / util.ccscoring / ScoreFunctionFactory.hh
modeler / rna / sugar / util.ccscoring / ScoreType.hh
modeler / rna / util.ccscoring / ScoreType.hh
modeler / rna / util.ccio / silent / SilentFileData.hh
legacy / modeler / protein / util.ccio / silent / SilentFileData.hh
sampler / protein / util.ccio / silent / SilentFileData.hh
monte_carlo / util.ccio / silent / SilentFileData.hh
legacy / modeler / protein / util.ccio / silent / SilentFileOptions.hh
sampler / protein / util.ccio / silent / SilentFileOptions.hh
monte_carlo / util.ccio / silent / SilentFileOptions.hh
monte_carlo / util.ccio / silent / SilentStruct.hh
modeler / working_parameters / util.ccpose / subpose_manipulation_util.hh
modeler / rna / util.ccpack / task / TaskFactory.hh
modeler / rna / sugar / util.ccid / TorsionID.hh
modeler / rna / util.ccid / TorsionID.hh
modeler / rna / rigid_body / util.ccid / TorsionID.hh
sampler / protein / util.ccid / TorsionID.hh
modeler / rna / phosphate / util.ccid / TorsionID.hh
modeler / protein / loop_close / util.ccid / TorsionID.hh
modeler / rna / util.cctypes.hh
modeler / rna / rigid_body / util.cctypes.hh
legacy / modeler / protein / util.cctypes.hh
modeler / protein / util.cctypes.hh
monte_carlo / util.cctypes.hh
modeler / util.cctypes.hh
modeler / working_parameters / util.ccpose / util.hh
modeler / working_parameters / util.ccpose / full_model_info / util.hh
modeler / rna / sugar / util.ccpose / copydofs / util.hh
legacy / modeler / rna / util.ccsequence / util.hh
legacy / modeler / rna / util.ccpose / rna / util.hh
legacy / modeler / rna / util.ccchemical / rna / util.hh
modeler / rna / util.ccscoring / constraints / util.hh
modeler / rna / util.ccchemical / rna / util.hh
modeler / rna / util.ccpose / rna / util.hh
modeler / rna / util.ccpose / full_model_info / util.hh
modeler / rna / util.ccchemical / util.hh
sampler / rna / util.ccpose / rna / util.hh
sampler / rna / util.ccchemical / rna / util.hh
modeler / rna / rigid_body / util.ccscoring / constraints / util.hh
modeler / rna / rigid_body / util.ccchemical / util.hh
modeler / rna / rigid_body / util.ccchemical / rna / util.hh
legacy / modeler / protein / util.ccpose / util.hh
legacy / modeler / protein / util.ccpose / full_model_info / util.hh
legacy / modeler / protein / util.ccio / silent / util.hh
modeler / protein / util.ccpose / util.hh
modeler / protein / util.ccpose / full_model_info / util.hh
sampler / protein / util.ccio / silent / util.hh
modeler / rna / phosphate / util.ccscoring / constraints / util.hh
modeler / rna / phosphate / util.ccchemical / rna / util.hh
modeler / packer / util.ccpose / util.hh
modeler / movemap / util.ccpose / full_model_info / util.hh
monte_carlo / util.ccchemical / rna / util.hh
monte_carlo / util.ccpose / rna / util.hh
monte_carlo / util.ccpose / full_model_info / util.hh
monte_carlo / util.ccio / silent / util.hh
modeler / util.ccpose / full_model_info / util.hh
modeler / util.ccpose / copydofs / util.hh
modeler / util.ccchemical / rna / util.hh
modeler / align / util.ccpose / util.hh
modeler / rna / util.ccpose / util.tmpl.hh
modeler / util.ccpose / util.tmpl.hh
modeler / rna / sugar / util.ccpose / variant_util.hh
modeler / rna / util.ccpose / variant_util.hh
sampler / protein / util.ccpose / variant_util.hh
modeler / rna / phosphate / util.ccpose / variant_util.hh
modeler / util.ccpose / variant_util.hh
modeler / working_parameters / util.ccchemical / VariantType.hh
sampler / rna / util.ccchemical / VariantType.hh
modeler / rna / rigid_body / util.ccchemical / VariantType.hh
sampler / protein / util.ccchemical / VariantType.hh
modeler / rna / phosphate / util.ccchemical / VariantType.hh
modeler / movemap / util.ccchemical / VariantType.hh
modeler / util.ccchemical / VariantType.hh
modeler / rna / util.hhchemical / AA.hh
legacy / modeler / protein / util.hhid / AtomID.fwd.hh
modeler / protein / util.hhid / AtomID.fwd.hh
modeler / util.hhid / AtomID.fwd.hh
modeler / align / util.hhid / AtomID.hh
modeler / rna / util.hhid / AtomID_Map.fwd.hh
legacy / modeler / protein / util.hhid / AtomID_Map.fwd.hh
modeler / protein / util.hhid / AtomID_Map.fwd.hh
modeler / util.hhid / AtomID_Map.fwd.hh
modeler / align / util.hhid / AtomID_Map.hh
modeler / working_parameters / util.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
modeler / movemap / util.hhpose / toolbox / AtomLevelDomainMap.hh
modeler / rna / util.hhio / silent / BinarySilentStruct.hh
modeler / util.hhkinematics / Edge.fwd.hh
modeler / rna / phosphate / util.hhscoring / methods / EnergyMethodOptions.fwd.hh
legacy / modeler / rna / util.hhkinematics / FoldTree.fwd.hh
modeler / rna / util.hhkinematics / FoldTree.fwd.hh
modeler / util.hhkinematics / FoldTree.fwd.hh
modeler / util.hhpose / full_model_info / FullModelInfo.fwd.hh
modeler / rna / util.hhoptimization / MinimizerOptions.hh
modeler / working_parameters / util.hhkinematics / MoveMap.fwd.hh
modeler / rna / util.hhkinematics / MoveMap.fwd.hh
modeler / movemap / util.hhkinematics / MoveMap.fwd.hh
modeler / util.hhkinematics / MoveMap.fwd.hh
modeler / rna / util.hhpack / task / PackerTask.fwd.hh
modeler / working_parameters / util.hhpose / Pose.fwd.hh
modeler / rna / sugar / util.hhpose / Pose.fwd.hh
legacy / modeler / rna / util.hhpose / Pose.fwd.hh
modeler / rna / util.hhpose / Pose.fwd.hh
sampler / rna / util.hhpose / Pose.fwd.hh
modeler / rna / rigid_body / util.hhpose / Pose.fwd.hh
legacy / modeler / protein / util.hhpose / Pose.fwd.hh
modeler / protein / util.hhpose / Pose.fwd.hh
sampler / protein / util.hhpose / Pose.fwd.hh
modeler / polar_hydrogens / util.hhpose / Pose.fwd.hh
modeler / rna / phosphate / util.hhpose / Pose.fwd.hh
modeler / packer / util.hhpose / Pose.fwd.hh
modeler / movemap / util.hhpose / Pose.fwd.hh
monte_carlo / util.hhpose / Pose.fwd.hh
modeler / util.hhpose / Pose.fwd.hh
modeler / protein / loop_close / util.hhpose / Pose.fwd.hh
modeler / align / util.hhpose / Pose.fwd.hh
modeler / rna / rigid_body / util.hhconformation / Residue.fwd.hh
modeler / rna / util.hhconformation / Residue.hh
modeler / polar_hydrogens / util.hhchemical / ResidueType.fwd.hh
modeler / rna / util.hhio / silent / RNA_SilentStruct.hh
modeler / util.hhio / silent / RNA_SilentStruct.hh
modeler / rna / sugar / util.hhscoring / ScoreFunction.fwd.hh
modeler / rna / util.hhscoring / ScoreFunction.fwd.hh
modeler / rna / phosphate / util.hhscoring / ScoreFunction.fwd.hh
modeler / packer / util.hhscoring / ScoreFunction.fwd.hh
modeler / util.hhscoring / ScoreFunction.fwd.hh
modeler / rna / util.hhio / silent / SilentFileData.hh
legacy / modeler / protein / util.hhio / silent / SilentFileData.hh
modeler / protein / util.hhio / silent / SilentFileData.hh
monte_carlo / util.hhio / silent / SilentStruct.fwd.hh
sampler / protein / util.hhkinematics / Stub.fwd.hh
modeler / working_parameters / util.hhtypes.hh
modeler / rna / sugar / util.hhtypes.hh
screener / util.hhtypes.hh
legacy / modeler / rna / util.hhtypes.hh
modeler / rna / util.hhtypes.hh
sampler / rna / util.hhtypes.hh
modeler / rna / rigid_body / util.hhtypes.hh
legacy / modeler / protein / util.hhtypes.hh
modeler / protein / util.hhtypes.hh
sampler / protein / util.hhtypes.hh
modeler / polar_hydrogens / util.hhtypes.hh
modeler / rna / phosphate / util.hhtypes.hh
modeler / packer / util.hhtypes.hh
modeler / movemap / util.hhtypes.hh
monte_carlo / util.hhtypes.hh
modeler / util.hhtypes.hh
modeler / align / util.hhtypes.hh
modeler / util.hhchemical / VariantType.hh
monte_carlo / mover / VaryLoopLengthMover.ccpose / full_model_info / FullModelInfo.hh
monte_carlo / mover / VaryLoopLengthMover.ccpose / full_model_info / FullModelParameters.hh
monte_carlo / mover / VaryLoopLengthMover.ccpose / Pose.hh
monte_carlo / mover / VaryLoopLengthMover.ccpose / full_model_info / util.hh
monte_carlo / mover / VaryLoopLengthMover.hhpose / full_model_info / FullModelParameters.fwd.hh
monte_carlo / mover / VaryLoopLengthMover.hhpose / Pose.fwd.hh
screener / VDW_BinScreener.ccpose / Pose.hh
screener / VDW_BinScreener.ccconformation / Residue.hh
screener / VDW_BinScreener.cckinematics / Stub.hh
screener / VDW_BinScreener.hhpose / Pose.fwd.hh
screener / VDW_BinScreener.hhconformation / Residue.fwd.hh
screener / VDW_BinScreener.hhkinematics / Stub.fwd.hh
screener / VDW_BinScreener.hhtypes.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.ccpose / extra_pose_info_util.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.ccpose / Pose.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.ccscoring / ScoreFunction.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.ccscoring / ScoreType.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.ccchemical / rna / util.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.ccpose / rna / util.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.ccpose / variant_util.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.ccchemical / VariantType.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.hhpose / Pose.fwd.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.hhscoring / ScoreFunction.fwd.hh
modeler / rna / sugar / VirtualSugarJustInTimeInstantiator.hhtypes.hh
modeler / rna / sugar / VirtualSugarSampler.ccoptimization / AtomTreeMinimizer.hh
modeler / rna / sugar / VirtualSugarSampler.ccchemical / AtomType.hh
modeler / rna / sugar / VirtualSugarSampler.ccchemical / ChemicalManager.hh
modeler / rna / sugar / VirtualSugarSampler.ccscoring / constraints / ConstraintSet.hh
modeler / rna / sugar / VirtualSugarSampler.ccscoring / Energies.hh
modeler / rna / sugar / VirtualSugarSampler.ccscoring / EnergyMap.hh
modeler / rna / sugar / VirtualSugarSampler.ccscoring / methods / EnergyMethodOptions.hh
modeler / rna / sugar / VirtualSugarSampler.ccpose / extra_pose_info_util.hh
modeler / rna / sugar / VirtualSugarSampler.ccoptimization / MinimizerOptions.hh
modeler / rna / sugar / VirtualSugarSampler.ccpose / Pose.hh
modeler / rna / sugar / VirtualSugarSampler.ccconformation / Residue.hh
modeler / rna / sugar / VirtualSugarSampler.ccchemical / ResidueTypeSet.hh
modeler / rna / sugar / VirtualSugarSampler.ccscoring / rna / RNA_TorsionPotential.hh
modeler / rna / sugar / VirtualSugarSampler.ccscoring / ScoreFunction.hh
modeler / rna / sugar / VirtualSugarSampler.ccscoring / ScoreFunctionFactory.hh
modeler / rna / sugar / VirtualSugarSampler.cctypes.hh
modeler / rna / sugar / VirtualSugarSampler.ccscoring / constraints / util.hh
modeler / rna / sugar / VirtualSugarSampler.ccpose / full_model_info / util.hh
modeler / rna / sugar / VirtualSugarSampler.ccpose / rna / util.hh
modeler / rna / sugar / VirtualSugarSampler.ccchemical / rna / util.hh
modeler / rna / sugar / VirtualSugarSampler.ccchemical / util.hh
modeler / rna / sugar / VirtualSugarSampler.ccpose / variant_util.hh
modeler / rna / sugar / VirtualSugarSampler.ccchemical / VariantType.hh
modeler / rna / sugar / VirtualSugarSampler.hhscoring / constraints / ConstraintSet.fwd.hh
modeler / rna / sugar / VirtualSugarSampler.hhscoring / constraints / ConstraintSet.hh
modeler / rna / sugar / VirtualSugarSampler.hhkinematics / FoldTree.hh
modeler / rna / sugar / VirtualSugarSampler.hhpose / Pose.fwd.hh
modeler / rna / sugar / VirtualSugarSampler.hhscoring / ScoreFunction.fwd.hh
modeler / rna / sugar / VirtualSugarSampler.hhtypes.hh
modeler / rna / sugar / VirtualSugarSamplerFromStringList.ccconformation / Conformation.hh
modeler / rna / sugar / VirtualSugarSamplerFromStringList.ccpose / extra_pose_info_util.hh
modeler / rna / sugar / VirtualSugarSamplerFromStringList.ccpose / full_model_info / FullModelInfo.hh
modeler / rna / sugar / VirtualSugarSamplerFromStringList.ccpose / Pose.hh
modeler / rna / sugar / VirtualSugarSamplerFromStringList.ccscoring / ScoreFunction.hh
modeler / rna / sugar / VirtualSugarSamplerFromStringList.ccpose / rna / util.hh
modeler / rna / sugar / VirtualSugarSamplerFromStringList.ccpose / variant_util.hh
modeler / rna / sugar / VirtualSugarSamplerFromStringList.hhpose / Pose.fwd.hh
modeler / rna / sugar / VirtualSugarSamplerFromStringList.hhscoring / ScoreFunction.fwd.hh