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modeler → core Relation

File in src/protocols/stepwise/modelerIncludes file in src/core
rna / bulge / BulgeApplyMover.ccpose / Pose.hh
rna / bulge / BulgeApplyMover.ccscoring / constraints / util.hh
rna / bulge / BulgeApplyMover.ccpose / rna / util.hh
rna / bulge / BulgeUnApplyMover.ccpose / Pose.hh
rna / bulge / BulgeUnApplyMover.ccscoring / constraints / util.hh
rna / bulge / BulgeUnApplyMover.ccpose / rna / util.hh
constraint_util.ccscoring / constraints / Constraint.hh
constraint_util.ccscoring / constraints / ConstraintIO.hh
constraint_util.ccscoring / constraints / ConstraintSet.hh
constraint_util.ccscoring / constraints / CoordinateConstraint.hh
constraint_util.ccpose / Pose.hh
constraint_util.ccscoring / ScoreFunction.hh
constraint_util.ccid / SequenceMapping.hh
constraint_util.ccpose / util.hh
constraint_util.ccscoring / constraints / util.hh
constraint_util.hhscoring / constraints / ConstraintSet.fwd.hh
constraint_util.hhpose / Pose.fwd.hh
constraint_util.hhscoring / ScoreFunction.fwd.hh
constraint_util.hhtypes.hh
rna / rigid_body / FloatingBaseClasses.hhtypes.hh
protein / InputStreamWithResidueInfo.ccimport_pose / pose_stream / ExtendedPoseInputStream.hh
protein / InputStreamWithResidueInfo.ccimport_pose / pose_stream / PDBPoseInputStream.hh
protein / InputStreamWithResidueInfo.ccpose / Pose.hh
protein / InputStreamWithResidueInfo.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
protein / InputStreamWithResidueInfo.ccchemical / ResidueType.hh
protein / InputStreamWithResidueInfo.ccscoring / rms_util.hh
protein / InputStreamWithResidueInfo.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
protein / InputStreamWithResidueInfo.cctypes.hh
protein / InputStreamWithResidueInfo.ccpose / copydofs / util.hh
protein / InputStreamWithResidueInfo.ccpose / rna / util.hh
protein / InputStreamWithResidueInfo.ccpose / variant_util.hh
protein / InputStreamWithResidueInfo.hhpose / Pose.fwd.hh
protein / InputStreamWithResidueInfo.hhimport_pose / pose_stream / PoseInputStream.fwd.hh
protein / InputStreamWithResidueInfo.hhchemical / ResidueTypeSet.fwd.hh
protein / InputStreamWithResidueInfo.hhtypes.hh
protein / MainChainTorsionSet.ccio / silent / BinarySilentStruct.hh
protein / MainChainTorsionSet.cctypes.hh
protein / MainChainTorsionSet.hhtypes.hh
rna / phosphate / MultiPhosphateSampler.cckinematics / FoldTree.hh
rna / phosphate / MultiPhosphateSampler.ccpose / full_model_info / FullModelInfo.hh
rna / phosphate / MultiPhosphateSampler.ccpose / Pose.hh
rna / phosphate / MultiPhosphateSampler.ccconformation / Residue.hh
rna / phosphate / MultiPhosphateSampler.ccscoring / ScoreFunction.hh
rna / phosphate / MultiPhosphateSampler.ccid / TorsionID.hh
rna / phosphate / MultiPhosphateSampler.ccchemical / rna / util.hh
rna / phosphate / MultiPhosphateSampler.hhpose / Pose.fwd.hh
rna / phosphate / MultiPhosphateSampler.hhscoring / ScoreFunction.fwd.hh
rna / phosphate / MultiPhosphateSampler.hhtypes.hh
rna / o2prime / O2PrimePacker.ccpack / task / PackerTask.hh
rna / o2prime / O2PrimePacker.ccpack / rotamer_trials.hh
rna / o2prime / O2PrimePacker.ccscoring / ScoreFunction.hh
rna / o2prime / O2PrimePacker.ccpack / task / TaskFactory.hh
rna / o2prime / O2PrimePacker.ccpack / task / operation / TaskOperations.hh
rna / o2prime / O2PrimePacker.hhpack / task / PackerTask.fwd.hh
rna / o2prime / O2PrimePacker.hhpose / Pose.hh
rna / o2prime / O2PrimePacker.hhscoring / ScoreFunction.fwd.hh
output_util.cckinematics / FoldTree.hh
output_util.cckinematics / MoveMap.hh
output_util.ccpose / Pose.hh
output_util.ccchemical / ResidueType.hh
output_util.hhkinematics / MoveMap.fwd.hh
output_util.hhpose / Pose.fwd.hh
output_util.hhtypes.hh
rna / phosphate / PhosphateMove.hhtypes.hh
rna / phosphate / PhosphateMover.ccchemical / AtomType.hh
rna / phosphate / PhosphateMover.ccscoring / Energies.hh
rna / phosphate / PhosphateMover.cckinematics / FoldTree.hh
rna / phosphate / PhosphateMover.ccpose / Pose.hh
rna / phosphate / PhosphateMover.ccconformation / ResidueFactory.hh
rna / phosphate / PhosphateMover.ccchemical / ResidueType.hh
rna / phosphate / PhosphateMover.ccchemical / rna / RNA_Info.hh
rna / phosphate / PhosphateMover.ccchemical / rna / RNA_SamplerUtil.hh
rna / phosphate / PhosphateMover.ccscoring / ScoreFunction.hh
rna / phosphate / PhosphateMover.ccid / TorsionID.hh
rna / phosphate / PhosphateMover.ccchemical / rna / util.hh
rna / phosphate / PhosphateMover.ccpose / rna / util.hh
rna / phosphate / PhosphateMover.ccpose / variant_util.hh
rna / phosphate / PhosphateMover.hhpose / Pose.fwd.hh
rna / phosphate / PhosphateMover.hhchemical / rna / RNA_FittedTorsionInfo.hh
rna / phosphate / PhosphateMover.hhscoring / ScoreFunction.fwd.hh
rna / phosphate / PhosphateMover.hhtypes.hh
polar_hydrogens / PolarHydrogenPacker.ccid / AtomID.hh
polar_hydrogens / PolarHydrogenPacker.ccscoring / hbonds / HBondDatabase.hh
polar_hydrogens / PolarHydrogenPacker.ccscoring / hbonds / HBondOptions.hh
polar_hydrogens / PolarHydrogenPacker.ccscoring / hbonds / hbonds_geom.hh
polar_hydrogens / PolarHydrogenPacker.ccid / NamedAtomID.hh
polar_hydrogens / PolarHydrogenPacker.ccpose / PDBInfo.hh
polar_hydrogens / PolarHydrogenPacker.ccconformation / Residue.hh
polar_hydrogens / PolarHydrogenPacker.ccconformation / ResidueFactory.hh
polar_hydrogens / PolarHydrogenPacker.ccchemical / ResidueType.hh
polar_hydrogens / PolarHydrogenPacker.ccchemical / rna / RNA_Info.hh
polar_hydrogens / PolarHydrogenPacker.cckinematics / Stub.hh
polar_hydrogens / PolarHydrogenPacker.ccscoring / hbonds / types.hh
polar_hydrogens / PolarHydrogenPacker.ccpose / variant_util.hh
polar_hydrogens / PolarHydrogenPacker.hhscoring / hbonds / HBEvalTuple.hh
polar_hydrogens / PolarHydrogenPacker.hhscoring / hbonds / HBondDatabase.fwd.hh
polar_hydrogens / PolarHydrogenPacker.hhscoring / hbonds / HBondOptions.fwd.hh
polar_hydrogens / PolarHydrogenPacker.hhkinematics / Stub.fwd.hh
polar_hydrogens / PolarHydrogenPacker.hhtypes.hh
precomputed / PrecomputedLibraryMover.ccconformation / Conformation.hh
precomputed / PrecomputedLibraryMover.cckinematics / FoldTree.hh
precomputed / PrecomputedLibraryMover.ccpose / full_model_info / FullModelInfo.hh
precomputed / PrecomputedLibraryMover.ccpose / Pose.hh
precomputed / PrecomputedLibraryMover.ccconformation / Residue.hh
precomputed / PrecomputedLibraryMover.ccio / silent / SilentFileData.hh
precomputed / PrecomputedLibraryMover.ccio / silent / SilentFileOptions.hh
precomputed / PrecomputedLibraryMover.ccio / silent / SilentStruct.hh
precomputed / PrecomputedLibraryMover.ccpose / full_model_info / util.hh
precomputed / PrecomputedLibraryMover.ccpose / util.hh
precomputed / PrecomputedLibraryMover.hhpose / Pose.fwd.hh
precomputed / PrecomputedLibraryMover.hhio / silent / SilentFileData.fwd.hh
protein / checker / ProteinAtrRepChecker.ccscoring / Energies.hh
protein / checker / ProteinAtrRepChecker.ccscoring / methods / EnergyMethodOptions.hh
protein / checker / ProteinAtrRepChecker.ccscoring / etable / Etable.hh
protein / checker / ProteinAtrRepChecker.ccscoring / etable / EtableEnergy.hh
protein / checker / ProteinAtrRepChecker.ccpose / Pose.hh
protein / checker / ProteinAtrRepChecker.ccscoring / ScoreFunction.hh
protein / checker / ProteinAtrRepChecker.ccscoring / ScoringManager.hh
protein / checker / ProteinAtrRepChecker.ccpose / util.hh
protein / checker / ProteinAtrRepChecker.hhpose / Pose.hh
protein / checker / ProteinAtrRepChecker.hhscoring / ScoreFunction.fwd.hh
rna / checker / RNA_AtrRepChecker.ccscoring / Energies.hh
rna / checker / RNA_AtrRepChecker.ccscoring / methods / EnergyMethodOptions.hh
rna / checker / RNA_AtrRepChecker.ccscoring / etable / Etable.hh
rna / checker / RNA_AtrRepChecker.ccscoring / etable / EtableEnergy.hh
rna / checker / RNA_AtrRepChecker.ccpose / Pose.hh
rna / checker / RNA_AtrRepChecker.ccscoring / ScoreFunction.hh
rna / checker / RNA_AtrRepChecker.ccscoring / ScoringManager.hh
rna / checker / RNA_AtrRepChecker.ccpose / variant_util.hh
rna / checker / RNA_AtrRepChecker.hhscoring / methods / EnergyMethodOptions.fwd.hh
rna / checker / RNA_AtrRepChecker.hhpose / Pose.hh
rna / checker / RNA_AtrRepChecker.hhscoring / ScoreFunction.fwd.hh
rna / checker / RNA_BaseCentroidChecker.cckinematics / FoldTree.hh
rna / checker / RNA_BaseCentroidChecker.ccpose / Pose.hh
rna / checker / RNA_BaseCentroidChecker.ccconformation / Residue.hh
rna / checker / RNA_BaseCentroidChecker.ccscoring / rna / RNA_CentroidInfo.hh
rna / checker / RNA_BaseCentroidChecker.cckinematics / Stub.hh
rna / checker / RNA_BaseCentroidChecker.ccid / TorsionID.hh
rna / checker / RNA_BaseCentroidChecker.hhpose / Pose.fwd.hh
rna / checker / RNA_BaseCentroidChecker.hhscoring / rna / RNA_CentroidInfo.fwd.hh
rna / checker / RNA_BaseCentroidChecker.hhkinematics / Stub.hh
rna / checker / RNA_BaseCentroidChecker.hhtypes.hh
rna / checker / RNA_BaseCentroidChecker.hhchemical / rna / util.hh
rna / checker / RNA_ChainClosableGeometryChecker.ccpose / Pose.hh
rna / checker / RNA_ChainClosableGeometryChecker.ccconformation / Residue.hh
rna / checker / RNA_ChainClosableGeometryChecker.cckinematics / Stub.hh
rna / checker / RNA_ChainClosableGeometryChecker.hhpose / Pose.fwd.hh
rna / checker / RNA_ChainClosableGeometryChecker.hhconformation / Residue.fwd.hh
rna / checker / RNA_ChainClosableGeometryChecker.hhkinematics / Stub.fwd.hh
rna / checker / RNA_ChainClosableGeometryChecker.hhtypes.hh
rna / checker / RNA_ChainClosureChecker.ccscoring / Energies.hh
rna / checker / RNA_ChainClosureChecker.ccconformation / Residue.hh
rna / checker / RNA_ChainClosureChecker.ccscoring / ScoreFunction.hh
rna / checker / RNA_ChainClosureChecker.ccscoring / ScoreType.hh
rna / checker / RNA_ChainClosureChecker.ccid / TorsionID.hh
rna / checker / RNA_ChainClosureChecker.ccchemical / VariantType.hh
rna / checker / RNA_ChainClosureChecker.hhpose / Pose.hh
rna / checker / RNA_ChainClosureChecker.hhscoring / ScoreFunction.fwd.hh
rna / checker / RNA_VDW_BinChecker.ccid / AtomID_Map.hh
rna / checker / RNA_VDW_BinChecker.ccchemical / AtomType.hh
rna / checker / RNA_VDW_BinChecker.ccchemical / ChemicalManager.hh
rna / checker / RNA_VDW_BinChecker.ccpose / full_model_info / FullModelInfo.hh
rna / checker / RNA_VDW_BinChecker.ccimport_pose / import_pose.hh
rna / checker / RNA_VDW_BinChecker.cckinematics / MoveMap.hh
rna / checker / RNA_VDW_BinChecker.ccpose / PDBInfo.hh
rna / checker / RNA_VDW_BinChecker.ccpose / Pose.hh
rna / checker / RNA_VDW_BinChecker.ccconformation / Residue.hh
rna / checker / RNA_VDW_BinChecker.ccconformation / ResidueFactory.hh
rna / checker / RNA_VDW_BinChecker.ccchemical / ResidueTypeSet.hh
rna / checker / RNA_VDW_BinChecker.ccscoring / rms_util.tmpl.hh
rna / checker / RNA_VDW_BinChecker.cctypes.hh
rna / checker / RNA_VDW_BinChecker.ccpose / rna / util.hh
rna / checker / RNA_VDW_BinChecker.ccpose / util.hh
rna / checker / RNA_VDW_BinChecker.ccchemical / rna / util.hh
rna / checker / RNA_VDW_BinChecker.ccchemical / util.hh
rna / checker / RNA_VDW_BinChecker.ccchemical / VariantType.hh
rna / checker / RNA_VDW_BinChecker.ccpose / rna / VDW_Grid.hh
rna / checker / RNA_VDW_BinChecker.ccpose / rna / VDW_RepScreenInfo.hh
rna / checker / RNA_VDW_BinChecker.hhchemical / AA.hh
rna / checker / RNA_VDW_BinChecker.hhkinematics / FoldTree.fwd.hh
rna / checker / RNA_VDW_BinChecker.hhpose / Pose.fwd.hh
rna / checker / RNA_VDW_BinChecker.hhpose / Pose.hh
rna / checker / RNA_VDW_BinChecker.hhconformation / Residue.hh
rna / checker / RNA_VDW_BinChecker.hhtypes.hh
rna / checker / RNA_VDW_BinChecker.hhpose / rna / VDW_Grid.hh
rna / checker / RNA_VDW_BinChecker.hhpose / rna / VDW_RepScreenInfo.hh
scoring_util.ccscoring / methods / EnergyMethodOptions.hh
scoring_util.ccscoring / etable / EtableOptions.hh
scoring_util.ccpose / Pose.hh
scoring_util.ccscoring / ScoreFunction.hh
scoring_util.ccscoring / ScoreFunctionFactory.hh
scoring_util.hhpose / Pose.fwd.hh
scoring_util.hhscoring / ScoreFunction.fwd.hh
packer / SideChainCopier.ccconformation / Conformation.hh
packer / SideChainCopier.ccpose / Pose.hh
packer / SideChainCopier.ccchemical / ResidueType.hh
packer / SideChainCopier.ccid / TorsionID.hh
packer / SideChainCopier.ccscoring / constraints / util.hh
packer / SideChainCopier.ccpose / copydofs / util.hh
options / StepWiseBasicModelerOptions.hhtypes.hh
working_parameters / StepWiseBasicWorkingParameters.ccpose / Pose.hh
working_parameters / StepWiseBasicWorkingParameters.hhpose / Pose.fwd.hh
working_parameters / StepWiseBasicWorkingParameters.hhtypes.hh
align / StepWiseClusterer.ccpose / extra_pose_info_util.hh
align / StepWiseClusterer.ccpose / Pose.hh
align / StepWiseClusterer.ccpose / util.hh
align / StepWiseClusterer.hhpose / Pose.hh
align / StepWiseClusterer.hhtypes.hh
StepWiseConnectionSampler.ccid / AtomID.hh
StepWiseConnectionSampler.ccscoring / methods / EnergyMethodOptions.hh
StepWiseConnectionSampler.ccpose / Pose.hh
StepWiseConnectionSampler.ccscoring / ScoreFunction.hh
StepWiseConnectionSampler.ccscoring / ScoreType.hh
StepWiseConnectionSampler.cckinematics / Stub.hh
StepWiseConnectionSampler.ccid / TorsionID.hh
StepWiseConnectionSampler.cctypes.hh
StepWiseConnectionSampler.ccpose / full_model_info / util.hh
StepWiseConnectionSampler.ccpose / rna / util.hh
StepWiseConnectionSampler.ccchemical / rna / util.hh
StepWiseConnectionSampler.ccpose / variant_util.hh
StepWiseConnectionSampler.hhpose / Pose.fwd.hh
StepWiseConnectionSampler.hhconformation / Residue.fwd.hh
StepWiseConnectionSampler.hhscoring / ScoreFunction.hh
StepWiseConnectionSampler.hhio / silent / SilentFileData.fwd.hh
StepWiseConnectionSampler.hhkinematics / Stub.hh
align / StepWiseLegacyClusterer.ccid / AtomID.hh
align / StepWiseLegacyClusterer.ccchemical / ChemicalManager.hh
align / StepWiseLegacyClusterer.ccpose / extra_pose_info_util.hh
align / StepWiseLegacyClusterer.ccpose / Pose.hh
align / StepWiseLegacyClusterer.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
align / StepWiseLegacyClusterer.ccimport_pose / pose_stream / PoseInputStream.hh
align / StepWiseLegacyClusterer.ccchemical / ResidueTypeSet.hh
align / StepWiseLegacyClusterer.ccscoring / rms_util.hh
align / StepWiseLegacyClusterer.ccio / silent / SilentFileData.hh
align / StepWiseLegacyClusterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
align / StepWiseLegacyClusterer.ccio / silent / SilentStruct.hh
align / StepWiseLegacyClusterer.ccpose / subpose_manipulation_util.hh
align / StepWiseLegacyClusterer.cctypes.hh
align / StepWiseLegacyClusterer.ccpose / util.hh
align / StepWiseLegacyClusterer.hhpose / Pose.hh
align / StepWiseLegacyClusterer.hhchemical / ResidueTypeSet.fwd.hh
align / StepWiseLegacyClusterer.hhscoring / ScoreFunction.fwd.hh
align / StepWiseLegacyClusterer.hhio / silent / SilentFileData.fwd.hh
align / StepWiseLegacyClusterer.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
align / StepWiseLegacyClusterer.hhio / silent / SilentStruct.fwd.hh
align / StepWiseLegacyClusterer.hhtypes.hh
align / StepWiseLegacyClustererSilentBased.ccchemical / ChemicalManager.hh
align / StepWiseLegacyClustererSilentBased.ccpose / extra_pose_info_util.hh
align / StepWiseLegacyClustererSilentBased.ccpose / Pose.hh
align / StepWiseLegacyClustererSilentBased.ccimport_pose / pose_stream / PoseInputStream.hh
align / StepWiseLegacyClustererSilentBased.ccchemical / ResidueTypeSet.hh
align / StepWiseLegacyClustererSilentBased.ccscoring / rms_util.hh
align / StepWiseLegacyClustererSilentBased.ccio / silent / SilentFileData.hh
align / StepWiseLegacyClustererSilentBased.ccio / silent / SilentFileOptions.hh
align / StepWiseLegacyClustererSilentBased.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
align / StepWiseLegacyClustererSilentBased.ccio / silent / SilentStruct.hh
align / StepWiseLegacyClustererSilentBased.ccpose / subpose_manipulation_util.hh
align / StepWiseLegacyClustererSilentBased.cctypes.hh
align / StepWiseLegacyClustererSilentBased.ccpose / util.hh
align / StepWiseLegacyClustererSilentBased.hhid / AtomID.hh
align / StepWiseLegacyClustererSilentBased.hhpose / Pose.fwd.hh
align / StepWiseLegacyClustererSilentBased.hhchemical / ResidueTypeSet.fwd.hh
align / StepWiseLegacyClustererSilentBased.hhscoring / ScoreFunction.fwd.hh
align / StepWiseLegacyClustererSilentBased.hhio / silent / SilentFileData.fwd.hh
align / StepWiseLegacyClustererSilentBased.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
align / StepWiseLegacyClustererSilentBased.hhio / silent / SilentStruct.fwd.hh
align / StepWiseLegacyClustererSilentBased.hhtypes.hh
packer / StepWiseMasterPacker.ccscoring / Energies.hh
packer / StepWiseMasterPacker.ccscoring / methods / EnergyMethodOptions.hh
packer / StepWiseMasterPacker.ccscoring / ScoreFunction.hh
packer / StepWiseMasterPacker.hhpose / Pose.fwd.hh
packer / StepWiseMasterPacker.hhscoring / ScoreFunction.hh
packer / StepWiseMasterPacker.hhtypes.hh
StepWiseMinimizer.ccid / AtomID.hh
StepWiseMinimizer.ccoptimization / AtomTreeMinimizer.hh
StepWiseMinimizer.ccoptimization / CartesianMinimizer.hh
StepWiseMinimizer.ccscoring / constraints / ConstraintSet.hh
StepWiseMinimizer.ccscoring / Energies.hh
StepWiseMinimizer.ccscoring / EnergyGraph.hh
StepWiseMinimizer.ccscoring / EnergyMap.hh
StepWiseMinimizer.ccpose / extra_pose_info_util.hh
StepWiseMinimizer.ccpose / full_model_info / FullModelInfo.hh
StepWiseMinimizer.ccoptimization / MinimizerOptions.hh
StepWiseMinimizer.cckinematics / MoveMap.hh
StepWiseMinimizer.ccpose / Pose.hh
StepWiseMinimizer.ccscoring / ScoreFunction.hh
StepWiseMinimizer.ccpose / rna / util.hh
StepWiseMinimizer.ccpose / util.hh
StepWiseMinimizer.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
StepWiseMinimizer.hhoptimization / AtomTreeMinimizer.fwd.hh
StepWiseMinimizer.hhoptimization / CartesianMinimizer.fwd.hh
StepWiseMinimizer.hhoptimization / MinimizerOptions.fwd.hh
StepWiseMinimizer.hhkinematics / MoveMap.fwd.hh
StepWiseMinimizer.hhpose / Pose.hh
StepWiseMinimizer.hhscoring / ScoreFunction.hh
StepWiseModeler.ccscoring / constraints / ConstraintIO.hh
StepWiseModeler.ccscoring / constraints / ConstraintSet.hh
StepWiseModeler.ccpose / full_model_info / FullModelInfo.hh
StepWiseModeler.ccpose / Pose.hh
StepWiseModeler.ccscoring / ScoreFunction.hh
StepWiseModeler.ccpose / full_model_info / util.hh
StepWiseModeler.ccpose / variant_util.hh
StepWiseModeler.hhscoring / constraints / ConstraintSet.fwd.hh
StepWiseModeler.hhkinematics / MoveMap.fwd.hh
StepWiseModeler.hhpose / Pose.fwd.hh
StepWiseModeler.hhscoring / ScoreFunction.fwd.hh
packer / StepWisePacker.ccscoring / Energies.hh
packer / StepWisePacker.ccscoring / EnergyGraph.hh
packer / StepWisePacker.ccpack / pack_rotamers.hh
packer / StepWisePacker.ccpack / task / PackerTask.hh
packer / StepWisePacker.ccpose / Pose.hh
packer / StepWisePacker.ccconformation / Residue.hh
packer / StepWisePacker.ccpack / rotamer_trials.hh
packer / StepWisePacker.ccscoring / ScoreFunction.hh
packer / StepWisePacker.ccscoring / ScoreFunctionFactory.hh
packer / StepWisePacker.ccio / silent / SilentFileData.fwd.hh
packer / StepWisePacker.ccio / silent / SilentFileData.hh
packer / StepWisePacker.ccpack / task / TaskFactory.hh
packer / StepWisePacker.ccpack / task / operation / TaskOperations.hh
packer / StepWisePacker.cctypes.hh
packer / StepWisePacker.ccpose / util.hh
packer / StepWisePacker.hhpack / task / PackerTask.fwd.hh
packer / StepWisePacker.hhpose / Pose.fwd.hh
packer / StepWisePacker.hhscoring / ScoreFunction.fwd.hh
packer / StepWisePacker.hhtypes.hh
align / StepWisePoseAligner.cckinematics / tree / Atom.hh
align / StepWisePoseAligner.cckinematics / AtomTree.hh
align / StepWisePoseAligner.ccscoring / constraints / ConstraintSet.hh
align / StepWisePoseAligner.ccscoring / constraints / CoordinateConstraint.hh
align / StepWisePoseAligner.ccscoring / func / FlatHarmonicFunc.hh
align / StepWisePoseAligner.cckinematics / FoldTree.hh
align / StepWisePoseAligner.ccpose / full_model_info / FullModelInfo.hh
align / StepWisePoseAligner.ccpose / full_model_info / FullModelParameters.hh
align / StepWisePoseAligner.ccpose / Pose.hh
align / StepWisePoseAligner.ccconformation / Residue.hh
align / StepWisePoseAligner.ccchemical / ResidueType.hh
align / StepWisePoseAligner.ccscoring / rms_util.hh
align / StepWisePoseAligner.ccpose / rna / util.hh
align / StepWisePoseAligner.ccpose / full_model_info / util.hh
align / StepWisePoseAligner.ccconformation / util.hh
align / StepWisePoseAligner.ccchemical / rna / util.hh
align / StepWisePoseAligner.ccchemical / VariantType.hh
align / StepWisePoseAligner.hhid / AtomID.hh
align / StepWisePoseAligner.hhpose / Pose.fwd.hh
align / StepWisePoseAligner.hhtypes.hh
protein / StepWiseProteinBackboneSampler.ccpose / annotated_sequence.hh
protein / StepWiseProteinBackboneSampler.ccid / AtomID.hh
protein / StepWiseProteinBackboneSampler.ccchemical / ChemicalManager.hh
protein / StepWiseProteinBackboneSampler.ccscoring / dssp / Dssp.hh
protein / StepWiseProteinBackboneSampler.ccscoring / Energies.hh
protein / StepWiseProteinBackboneSampler.cckinematics / Jump.hh
protein / StepWiseProteinBackboneSampler.ccpose / Pose.hh
protein / StepWiseProteinBackboneSampler.ccio / silent / ProteinSilentStruct.hh
protein / StepWiseProteinBackboneSampler.ccscoring / Ramachandran.hh
protein / StepWiseProteinBackboneSampler.ccscoring / RamaPrePro.hh
protein / StepWiseProteinBackboneSampler.ccscoring / rms_util.tmpl.hh
protein / StepWiseProteinBackboneSampler.ccscoring / ScoreFunction.hh
protein / StepWiseProteinBackboneSampler.ccscoring / ScoreFunctionFactory.hh
protein / StepWiseProteinBackboneSampler.ccscoring / ScoreType.hh
protein / StepWiseProteinBackboneSampler.ccscoring / ScoringManager.hh
protein / StepWiseProteinBackboneSampler.ccio / silent / SilentFileData.fwd.hh
protein / StepWiseProteinBackboneSampler.ccio / silent / SilentFileData.hh
protein / StepWiseProteinBackboneSampler.ccutil / SwitchResidueTypeSet.hh
protein / StepWiseProteinBackboneSampler.ccid / TorsionID.hh
protein / StepWiseProteinBackboneSampler.cctypes.hh
protein / StepWiseProteinBackboneSampler.ccpose / rna / util.hh
protein / StepWiseProteinBackboneSampler.ccpose / full_model_info / util.hh
protein / StepWiseProteinBackboneSampler.ccpose / variant_util.hh
protein / StepWiseProteinBackboneSampler.hhkinematics / FoldTree.fwd.hh
protein / StepWiseProteinBackboneSampler.hhpose / Pose.fwd.hh
protein / StepWiseProteinBackboneSampler.hhscoring / Ramachandran.fwd.hh
protein / StepWiseProteinBackboneSampler.hhscoring / RamaPrePro.fwd.hh
protein / StepWiseProteinBackboneSampler.hhscoring / ScoreFunction.fwd.hh
protein / StepWiseProteinBackboneSampler.hhid / TorsionID.fwd.hh
protein / StepWiseProteinBackboneSampler.hhtypes.hh
protein / loop_close / StepWiseProteinCCD_Closer.ccid / AtomID.hh
protein / loop_close / StepWiseProteinCCD_Closer.cckinematics / Jump.hh
protein / loop_close / StepWiseProteinCCD_Closer.ccpose / Pose.hh
protein / loop_close / StepWiseProteinCCD_Closer.ccconformation / Residue.hh
protein / loop_close / StepWiseProteinCCD_Closer.ccchemical / ResidueType.hh
protein / loop_close / StepWiseProteinCCD_Closer.ccid / TorsionID.hh
protein / loop_close / StepWiseProteinCCD_Closer.cctypes.hh
protein / loop_close / StepWiseProteinCCD_Closer.ccchemical / VariantType.hh
protein / loop_close / StepWiseProteinCCD_Closer.hhkinematics / MoveMap.hh
protein / loop_close / StepWiseProteinCCD_Closer.hhpose / Pose.fwd.hh
protein / loop_close / StepWiseProteinCCD_Closer.hhid / TorsionID.hh
protein / loop_close / StepWiseProteinCCD_MultiPoseCloser.ccpose / Pose.hh
protein / loop_close / StepWiseProteinCCD_MultiPoseCloser.hhpose / Pose.fwd.hh
protein / loop_close / StepWiseProteinCCD_MultiPoseCloser.hhid / TorsionID.fwd.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cckinematics / FoldTree.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cckinematics / Jump.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.ccpose / Pose.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.ccscoring / Ramachandran.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.ccconformation / Residue.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.ccchemical / ResidueConnection.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.ccio / silent / SilentFileData.fwd.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.ccid / TorsionID.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.cctypes.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.ccpose / rna / util.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.ccchemical / VariantType.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.hhpose / Pose.fwd.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.hhscoring / Ramachandran.hh
protein / loop_close / StepWiseProteinKIC_LoopBridger.hhid / TorsionID.fwd.hh
options / StepWiseProteinModelerOptions.hhtypes.hh
rna / StepWiseRNA_Classes.hhpose / Pose.fwd.hh
rna / StepWiseRNA_Classes.hhscoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_Classes.hhio / silent / SilentFileData.fwd.hh
rna / StepWiseRNA_Classes.hhid / TorsionID.hh
rna / StepWiseRNA_Classes.hhtypes.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / AtomType.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / ChemicalManager.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / extra_pose_info_util.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cckinematics / FoldTree.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / import_pose.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / Pose.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / PoseInputStream.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / PoseInputStream.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccconformation / Residue.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / ResidueTypeSet.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccscoring / rms_util.tmpl.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccimport_pose / pose_stream / SilentFilePoseInputStream.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccid / TorsionID.hh
rna / StepWiseRNA_CombineLongLoopFilterer.cctypes.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / util.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / util.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccpose / util.tmpl.hh
rna / StepWiseRNA_CombineLongLoopFilterer.ccchemical / VariantType.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hhpose / Pose.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hhchemical / ResidueTypeSet.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hhimport_pose / pose_stream / SilentFilePoseInputStream.fwd.hh
rna / StepWiseRNA_CombineLongLoopFilterer.hhtypes.hh
options / StepWiseRNA_ModelerOptions.hhtypes.hh
rna / StepWiseRNA_OutputData.ccscoring / constraints / AngleConstraint.hh
rna / StepWiseRNA_OutputData.ccscoring / constraints / AtomPairConstraint.hh
rna / StepWiseRNA_OutputData.ccoptimization / AtomTreeMinimizer.hh
rna / StepWiseRNA_OutputData.ccchemical / AtomType.hh
rna / StepWiseRNA_OutputData.ccio / silent / BinarySilentStruct.hh
rna / StepWiseRNA_OutputData.ccchemical / ChemicalManager.hh
rna / StepWiseRNA_OutputData.ccscoring / constraints / ConstraintSet.fwd.hh
rna / StepWiseRNA_OutputData.ccscoring / constraints / ConstraintSet.hh
rna / StepWiseRNA_OutputData.cckinematics / MoveMap.hh
rna / StepWiseRNA_OutputData.ccpack / pack_rotamers.hh
rna / StepWiseRNA_OutputData.ccpack / task / PackerTask.hh
rna / StepWiseRNA_OutputData.ccpose / Pose.hh
rna / StepWiseRNA_OutputData.ccconformation / Residue.hh
rna / StepWiseRNA_OutputData.ccchemical / ResidueTypeSet.hh
rna / StepWiseRNA_OutputData.ccscoring / rms_util.tmpl.hh
rna / StepWiseRNA_OutputData.ccpose / rna / RNA_BaseDoubletClasses.hh
rna / StepWiseRNA_OutputData.ccpose / rna / RNA_BasePairClassifier.hh
rna / StepWiseRNA_OutputData.ccchemical / rna / RNA_FittedTorsionInfo.hh
rna / StepWiseRNA_OutputData.ccpack / rotamer_trials.hh
rna / StepWiseRNA_OutputData.ccscoring / ScoreFunction.hh
rna / StepWiseRNA_OutputData.ccscoring / ScoreType.hh
rna / StepWiseRNA_OutputData.ccio / silent / SilentFileData.hh
rna / StepWiseRNA_OutputData.ccio / silent / SilentFileOptions.hh
rna / StepWiseRNA_OutputData.ccpack / task / TaskFactory.hh
rna / StepWiseRNA_OutputData.cctypes.hh
rna / StepWiseRNA_OutputData.ccscoring / constraints / util.hh
rna / StepWiseRNA_OutputData.ccchemical / util.hh
rna / StepWiseRNA_OutputData.ccchemical / VariantType.hh
rna / StepWiseRNA_OutputData.hhchemical / AA.hh
rna / StepWiseRNA_OutputData.hhio / silent / BinarySilentStruct.hh
rna / StepWiseRNA_OutputData.hhkinematics / FoldTree.fwd.hh
rna / StepWiseRNA_OutputData.hhoptimization / MinimizerOptions.hh
rna / StepWiseRNA_OutputData.hhkinematics / MoveMap.hh
rna / StepWiseRNA_OutputData.hhpose / Pose.fwd.hh
rna / StepWiseRNA_OutputData.hhconformation / Residue.hh
rna / StepWiseRNA_OutputData.hhio / silent / RNA_SilentStruct.hh
rna / StepWiseRNA_OutputData.hhscoring / ScoreFunction.fwd.hh
rna / StepWiseRNA_OutputData.hhio / silent / SilentFileData.hh
rna / StepWiseRNA_OutputData.hhtypes.hh
rna / StepWiseRNA_ResidueInfo.ccchemical / AtomType.hh
rna / StepWiseRNA_ResidueInfo.ccconformation / Conformation.hh
rna / StepWiseRNA_ResidueInfo.ccpose / Pose.fwd.hh
rna / StepWiseRNA_ResidueInfo.ccpose / Pose.hh
rna / StepWiseRNA_ResidueInfo.ccconformation / Residue.hh
rna / StepWiseRNA_ResidueInfo.hhpose / Pose.fwd.hh
rna / StepWiseRNA_ResidueInfo.hhtypes.hh
working_parameters / StepWiseWorkingParameters.cckinematics / FoldTree.hh
working_parameters / StepWiseWorkingParameters.ccpose / rna / util.hh
working_parameters / StepWiseWorkingParameters.hhkinematics / FoldTree.hh
working_parameters / StepWiseWorkingParameters.hhpose / Pose.fwd.hh
rna / sugar / SugarInstantiateMover.ccpose / Pose.hh
rna / sugar / SugarInstantiateMover.ccconformation / Residue.hh
rna / sugar / SugarInstantiateMover.ccchemical / types.hh
rna / sugar / SugarInstantiateMover.ccpose / variant_util.hh
rna / sugar / SugarModeling.ccpose / Pose.hh
rna / sugar / SugarModeling.cctypes.hh
rna / sugar / SugarModeling.ccchemical / rna / util.hh
rna / sugar / SugarModeling.ccpose / util.hh
rna / sugar / SugarModeling.hhpose / Pose.fwd.hh
rna / sugar / SugarModeling.hhtypes.hh
rna / sugar / SugarModeling.hhchemical / rna / util.hh
rna / sugar / SugarVirtualizeMover.ccpose / Pose.hh
rna / sugar / SugarVirtualizeMover.ccconformation / Residue.hh
rna / sugar / SugarVirtualizeMover.ccchemical / types.hh
rna / sugar / SugarVirtualizeMover.ccpose / variant_util.hh
rna / util.ccscoring / constraints / AngleConstraint.hh
rna / rigid_body / util.ccscoring / constraints / AngleConstraint.hh
rna / util.ccid / AtomID.hh
protein / util.ccid / AtomID.hh
util.ccid / AtomID.hh
rna / util.ccid / AtomID_Map.hh
protein / util.ccid / AtomID_Map.hh
util.ccid / AtomID_Map.hh
working_parameters / util.ccpose / toolbox / AtomLevelDomainMap.hh
rna / util.ccpose / toolbox / AtomLevelDomainMap.hh
rna / util.ccscoring / constraints / AtomPairConstraint.hh
rna / rigid_body / util.ccscoring / constraints / AtomPairConstraint.hh
rna / sugar / util.ccoptimization / AtomTreeMinimizer.hh
rna / util.ccoptimization / AtomTreeMinimizer.hh
rna / util.ccchemical / AtomType.hh
rna / rigid_body / util.ccchemical / AtomType.hh
util.ccpose / datacache / CacheableDataType.hh
util.ccscoring / methods / chainbreak_util.hh
rna / util.ccchemical / ChemicalManager.hh
rna / rigid_body / util.ccchemical / ChemicalManager.hh
rna / util.ccscoring / func / CircularSplineFunc.hh
movemap / util.ccconformation / Conformation.hh
util.ccconformation / Conformation.hh
protein / util.ccfragment / ConstantLengthFragSet.hh
rna / rigid_body / util.ccscoring / constraints / ConstraintSet.fwd.hh
rna / util.ccscoring / constraints / ConstraintSet.hh
rna / rigid_body / util.ccscoring / constraints / ConstraintSet.hh
util.ccscoring / constraints / ConstraintSet.hh
rna / util.ccscoring / constraints / DihedralConstraint.hh
util.cckinematics / Edge.hh
packer / util.ccscoring / Energies.hh
util.ccscoring / Energies.hh
packer / util.ccscoring / EnergyGraph.hh
rna / phosphate / util.ccscoring / methods / EnergyMethodOptions.hh
rna / sugar / util.ccpose / extra_pose_info_util.hh
util.ccpose / extra_pose_info_util.hh
rna / util.ccscoring / func / FadeFunc.hh
working_parameters / util.cckinematics / FoldTree.hh
protein / util.ccfragment / FragData.hh
protein / util.ccfragment / FragSet.hh
protein / util.ccfragment / Frame.hh
protein / util.ccfragment / FrameList.hh
working_parameters / util.ccpose / full_model_info / FullModelInfo.hh
rna / util.ccpose / full_model_info / FullModelInfo.hh
protein / util.ccpose / full_model_info / FullModelInfo.hh
movemap / util.ccpose / full_model_info / FullModelInfo.hh
util.ccpose / full_model_info / FullModelInfo.hh
align / util.ccpose / full_model_info / FullModelInfo.hh
working_parameters / util.ccpose / full_model_info / FullModelParameters.hh
rna / util.ccscoring / func / HarmonicFunc.hh
util.ccscoring / func / HarmonicFunc.hh
rna / util.ccimport_pose / import_pose.hh
util.ccimport_pose / import_pose.hh
util.ccscoring / loop_graph / LoopGraph.hh
rna / sugar / util.ccoptimization / MinimizerOptions.hh
rna / rigid_body / util.ccoptimization / MinimizerOptions.hh
working_parameters / util.cckinematics / MoveMap.hh
rna / sugar / util.cckinematics / MoveMap.hh
rna / util.cckinematics / MoveMap.hh
movemap / util.cckinematics / MoveMap.hh
util.cckinematics / MoveMap.hh
protein / util.ccid / NamedAtomID.hh
rna / phosphate / util.ccid / NamedAtomID.hh
movemap / util.ccid / NamedAtomID.hh
rna / util.ccpack / pack_rotamers.hh
rna / util.ccpack / task / PackerTask.hh
rna / sugar / util.ccpose / PDBInfo.hh
util.ccpose / PDBInfo.hh
working_parameters / util.ccpose / Pose.hh
rna / sugar / util.ccpose / Pose.hh
rna / util.ccpose / Pose.hh
rna / rigid_body / util.ccpose / Pose.hh
protein / util.ccpose / Pose.hh
polar_hydrogens / util.ccpose / Pose.hh
rna / phosphate / util.ccpose / Pose.hh
packer / util.ccpose / Pose.hh
movemap / util.ccpose / Pose.hh
util.ccpose / Pose.hh
protein / loop_close / util.ccpose / Pose.hh
align / util.ccpose / Pose.hh
rna / util.ccconformation / Residue.hh
rna / rigid_body / util.ccconformation / Residue.hh
packer / util.ccconformation / Residue.hh
movemap / util.ccconformation / Residue.hh
util.ccconformation / Residue.hh
rna / util.ccconformation / ResidueFactory.hh
rna / rigid_body / util.ccconformation / ResidueFactory.hh
rna / phosphate / util.ccconformation / ResidueFactory.hh
rna / util.ccchemical / ResidueProperties.hh
rna / util.ccchemical / ResidueType.hh
polar_hydrogens / util.ccchemical / ResidueType.hh
packer / util.ccchemical / ResidueType.hh
movemap / util.ccchemical / ResidueType.hh
rna / util.ccchemical / ResidueTypeSet.hh
rna / rigid_body / util.ccchemical / ResidueTypeSet.hh
rna / phosphate / util.ccchemical / ResidueTypeSet.hh
util.ccchemical / ResidueTypeSet.hh
protein / util.ccscoring / rms_util.hh
align / util.ccscoring / rms_util.hh
rna / util.ccscoring / rms_util.tmpl.hh
rna / rigid_body / util.ccscoring / rms_util.tmpl.hh
rna / util.ccpose / rna / RNA_BaseDoubletClasses.hh
rna / util.ccpose / rna / RNA_BasePairClassifier.hh
util.ccscoring / rna / RNA_CentroidInfo.hh
rna / rigid_body / util.ccchemical / rna / RNA_FittedTorsionInfo.hh
packer / util.ccchemical / rna / RNA_Info.hh
util.ccscoring / rna / RNA_ScoringInfo.hh
util.ccpose / rna / secstruct_legacy / RNA_SecStructLegacyInfo.hh
rna / rigid_body / util.ccscoring / rna / RNA_TorsionPotential.hh
rna / util.ccpack / rotamer_trials.hh
rna / sugar / util.ccscoring / ScoreFunction.hh
rna / util.ccscoring / ScoreFunction.hh
rna / rigid_body / util.ccscoring / ScoreFunction.hh
rna / phosphate / util.ccscoring / ScoreFunction.hh
packer / util.ccscoring / ScoreFunction.hh
util.ccscoring / ScoreFunction.hh
rna / sugar / util.ccscoring / ScoreFunctionFactory.hh
util.ccscoring / ScoreFunctionFactory.hh
rna / sugar / util.ccscoring / ScoreType.hh
rna / util.ccscoring / ScoreType.hh
rna / util.ccio / silent / SilentFileData.hh
working_parameters / util.ccpose / subpose_manipulation_util.hh
rna / util.ccpack / task / TaskFactory.hh
rna / sugar / util.ccid / TorsionID.hh
rna / util.ccid / TorsionID.hh
rna / rigid_body / util.ccid / TorsionID.hh
rna / phosphate / util.ccid / TorsionID.hh
protein / loop_close / util.ccid / TorsionID.hh
rna / util.cctypes.hh
rna / rigid_body / util.cctypes.hh
protein / util.cctypes.hh
util.cctypes.hh
working_parameters / util.ccpose / util.hh
working_parameters / util.ccpose / full_model_info / util.hh
rna / sugar / util.ccpose / copydofs / util.hh
rna / util.ccscoring / constraints / util.hh
rna / util.ccchemical / rna / util.hh
rna / util.ccpose / rna / util.hh
rna / util.ccpose / full_model_info / util.hh
rna / util.ccchemical / util.hh
rna / rigid_body / util.ccscoring / constraints / util.hh
rna / rigid_body / util.ccchemical / util.hh
rna / rigid_body / util.ccchemical / rna / util.hh
protein / util.ccpose / util.hh
protein / util.ccpose / full_model_info / util.hh
rna / phosphate / util.ccscoring / constraints / util.hh
rna / phosphate / util.ccchemical / rna / util.hh
packer / util.ccpose / util.hh
movemap / util.ccpose / full_model_info / util.hh
util.ccpose / full_model_info / util.hh
util.ccpose / copydofs / util.hh
util.ccchemical / rna / util.hh
align / util.ccpose / util.hh
rna / util.ccpose / util.tmpl.hh
util.ccpose / util.tmpl.hh
rna / sugar / util.ccpose / variant_util.hh
rna / util.ccpose / variant_util.hh
rna / phosphate / util.ccpose / variant_util.hh
util.ccpose / variant_util.hh
working_parameters / util.ccchemical / VariantType.hh
rna / rigid_body / util.ccchemical / VariantType.hh
rna / phosphate / util.ccchemical / VariantType.hh
movemap / util.ccchemical / VariantType.hh
util.ccchemical / VariantType.hh
rna / util.hhchemical / AA.hh
protein / util.hhid / AtomID.fwd.hh
util.hhid / AtomID.fwd.hh
align / util.hhid / AtomID.hh
rna / util.hhid / AtomID_Map.fwd.hh
protein / util.hhid / AtomID_Map.fwd.hh
util.hhid / AtomID_Map.fwd.hh
align / util.hhid / AtomID_Map.hh
working_parameters / util.hhpose / toolbox / AtomLevelDomainMap.fwd.hh
movemap / util.hhpose / toolbox / AtomLevelDomainMap.hh
rna / util.hhio / silent / BinarySilentStruct.hh
util.hhkinematics / Edge.fwd.hh
rna / phosphate / util.hhscoring / methods / EnergyMethodOptions.fwd.hh
rna / util.hhkinematics / FoldTree.fwd.hh
util.hhkinematics / FoldTree.fwd.hh
util.hhpose / full_model_info / FullModelInfo.fwd.hh
rna / util.hhoptimization / MinimizerOptions.hh
working_parameters / util.hhkinematics / MoveMap.fwd.hh
rna / util.hhkinematics / MoveMap.fwd.hh
movemap / util.hhkinematics / MoveMap.fwd.hh
util.hhkinematics / MoveMap.fwd.hh
rna / util.hhpack / task / PackerTask.fwd.hh
working_parameters / util.hhpose / Pose.fwd.hh
rna / sugar / util.hhpose / Pose.fwd.hh
rna / util.hhpose / Pose.fwd.hh
rna / rigid_body / util.hhpose / Pose.fwd.hh
protein / util.hhpose / Pose.fwd.hh
polar_hydrogens / util.hhpose / Pose.fwd.hh
rna / phosphate / util.hhpose / Pose.fwd.hh
packer / util.hhpose / Pose.fwd.hh
movemap / util.hhpose / Pose.fwd.hh
util.hhpose / Pose.fwd.hh
protein / loop_close / util.hhpose / Pose.fwd.hh
align / util.hhpose / Pose.fwd.hh
rna / rigid_body / util.hhconformation / Residue.fwd.hh
rna / util.hhconformation / Residue.hh
polar_hydrogens / util.hhchemical / ResidueType.fwd.hh
rna / util.hhio / silent / RNA_SilentStruct.hh
util.hhio / silent / RNA_SilentStruct.hh
rna / sugar / util.hhscoring / ScoreFunction.fwd.hh
rna / util.hhscoring / ScoreFunction.fwd.hh
rna / phosphate / util.hhscoring / ScoreFunction.fwd.hh
packer / util.hhscoring / ScoreFunction.fwd.hh
util.hhscoring / ScoreFunction.fwd.hh
rna / util.hhio / silent / SilentFileData.hh
protein / util.hhio / silent / SilentFileData.hh
working_parameters / util.hhtypes.hh
rna / sugar / util.hhtypes.hh
rna / util.hhtypes.hh
rna / rigid_body / util.hhtypes.hh
protein / util.hhtypes.hh
polar_hydrogens / util.hhtypes.hh
rna / phosphate / util.hhtypes.hh
packer / util.hhtypes.hh
movemap / util.hhtypes.hh
util.hhtypes.hh
align / util.hhtypes.hh
util.hhchemical / VariantType.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.ccpose / extra_pose_info_util.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.ccpose / Pose.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.ccscoring / ScoreFunction.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.ccscoring / ScoreType.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.ccchemical / rna / util.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.ccpose / rna / util.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.ccpose / variant_util.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.ccchemical / VariantType.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.hhpose / Pose.fwd.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.hhscoring / ScoreFunction.fwd.hh
rna / sugar / VirtualSugarJustInTimeInstantiator.hhtypes.hh
rna / sugar / VirtualSugarSampler.ccoptimization / AtomTreeMinimizer.hh
rna / sugar / VirtualSugarSampler.ccchemical / AtomType.hh
rna / sugar / VirtualSugarSampler.ccchemical / ChemicalManager.hh
rna / sugar / VirtualSugarSampler.ccscoring / constraints / ConstraintSet.hh
rna / sugar / VirtualSugarSampler.ccscoring / Energies.hh
rna / sugar / VirtualSugarSampler.ccscoring / EnergyMap.hh
rna / sugar / VirtualSugarSampler.ccscoring / methods / EnergyMethodOptions.hh
rna / sugar / VirtualSugarSampler.ccpose / extra_pose_info_util.hh
rna / sugar / VirtualSugarSampler.ccoptimization / MinimizerOptions.hh
rna / sugar / VirtualSugarSampler.ccpose / Pose.hh
rna / sugar / VirtualSugarSampler.ccconformation / Residue.hh
rna / sugar / VirtualSugarSampler.ccchemical / ResidueTypeSet.hh
rna / sugar / VirtualSugarSampler.ccscoring / rna / RNA_TorsionPotential.hh
rna / sugar / VirtualSugarSampler.ccscoring / ScoreFunction.hh
rna / sugar / VirtualSugarSampler.ccscoring / ScoreFunctionFactory.hh
rna / sugar / VirtualSugarSampler.cctypes.hh
rna / sugar / VirtualSugarSampler.ccscoring / constraints / util.hh
rna / sugar / VirtualSugarSampler.ccpose / full_model_info / util.hh
rna / sugar / VirtualSugarSampler.ccpose / rna / util.hh
rna / sugar / VirtualSugarSampler.ccchemical / rna / util.hh
rna / sugar / VirtualSugarSampler.ccchemical / util.hh
rna / sugar / VirtualSugarSampler.ccpose / variant_util.hh
rna / sugar / VirtualSugarSampler.ccchemical / VariantType.hh
rna / sugar / VirtualSugarSampler.hhscoring / constraints / ConstraintSet.fwd.hh
rna / sugar / VirtualSugarSampler.hhscoring / constraints / ConstraintSet.hh
rna / sugar / VirtualSugarSampler.hhkinematics / FoldTree.hh
rna / sugar / VirtualSugarSampler.hhpose / Pose.fwd.hh
rna / sugar / VirtualSugarSampler.hhscoring / ScoreFunction.fwd.hh
rna / sugar / VirtualSugarSampler.hhtypes.hh
rna / sugar / VirtualSugarSamplerFromStringList.ccconformation / Conformation.hh
rna / sugar / VirtualSugarSamplerFromStringList.ccpose / extra_pose_info_util.hh
rna / sugar / VirtualSugarSamplerFromStringList.ccpose / full_model_info / FullModelInfo.hh
rna / sugar / VirtualSugarSamplerFromStringList.ccpose / Pose.hh
rna / sugar / VirtualSugarSamplerFromStringList.ccscoring / ScoreFunction.hh
rna / sugar / VirtualSugarSamplerFromStringList.ccpose / rna / util.hh
rna / sugar / VirtualSugarSamplerFromStringList.ccpose / variant_util.hh
rna / sugar / VirtualSugarSamplerFromStringList.hhpose / Pose.fwd.hh
rna / sugar / VirtualSugarSamplerFromStringList.hhscoring / ScoreFunction.fwd.hh