Rosetta  2021.16
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frag_picker → core Relation

File in src/protocols/frag_pickerIncludes file in src/core
quota / ABEGO_SS_Config.cctypes.hh
quota / ABEGO_SS_Config.hhtypes.hh
quota / ABEGO_SS_Map.cctypes.hh
quota / ABEGO_SS_Map.hhtypes.hh
quota / ABEGO_SS_Pool.cctypes.hh
quota / ABEGO_SS_Pool.hhtypes.hh
scores / ABEGO_SS_Score.ccfragment / SecondaryStructure.hh
scores / ABEGO_SS_Score.cctypes.hh
scores / ABEGO_SS_Score.hhtypes.hh
scores / AdaptiveScoreHistogram.hhtypes.hh
scores / AmbigCSScore.hhtypes.hh
scores / AtomBasedConstraintsScore.ccid / NamedAtomID.hh
scores / AtomBasedConstraintsScore.ccpose / Pose.hh
scores / AtomBasedConstraintsScore.ccchemical / ResidueType.hh
scores / AtomPairConstraintsScore.ccscoring / func / Func.hh
scores / AtomPairConstraintsScore.ccscoring / func / FuncFactory.hh
scores / AtomPairConstraintsScore.hhscoring / func / Func.fwd.hh
scores / AtomPairConstraintsScore.hhscoring / func / Func.hh
scores / AtomPairConstraintsScore.hhscoring / func / FuncFactory.hh
BestTotalScoreSelector.cctypes.hh
BestTotalScoreSelector.hhtypes.hh
scores / BFactor.cctypes.hh
scores / BFactor.hhtypes.hh
BoundedCollector.hhtypes.hh
scores / CachingScoringMethod.hhtypes.hh
CandidatesCollector.hhtypes.hh
scores / ConstScore.hhtypes.hh
Contact.hhtypes.hh
ContactCounts.hhtypes.hh
CS2ndShift.ccio / raw_data / DisulfideFile.hh
CS2ndShift.cctypes.hh
CS2ndShift.hhtypes.hh
scores / CSScore.hhtypes.hh
CSTalosIO.cctypes.hh
CSTalosIO.hhtypes.hh
CustomScoreSelector.cctypes.hh
CustomScoreSelector.hhtypes.hh
scores / DihedralConstraintsScore.ccscoring / func / Func.hh
scores / DihedralConstraintsScore.ccscoring / func / FuncFactory.hh
scores / DihedralConstraintsScore.ccscoring / func / PeriodicFunc.hh
scores / DihedralConstraintsScore.hhscoring / func / FuncFactory.hh
scores / DisulfideDistance.ccio / raw_data / DisulfideFile.hh
scores / DisulfideDistance.hhtypes.hh
scores / DisulfideIdentity.cctypes.hh
scores / DisulfideIdentity.hhtypes.hh
DiversifyCrmsdByClustering.ccid / NamedAtomID.hh
DiversifyCrmsdByClustering.ccpose / Pose.hh
DiversifyCrmsdByClustering.hhtypes.hh
DiversifyCrmsdSelector.ccid / NamedAtomID.hh
DiversifyCrmsdSelector.ccpose / Pose.hh
DiversifyCrmsdSelector.hhtypes.hh
DiversifyDihedralsSelector.hhtypes.hh
Faraggi_SA.hhtypes.hh
scores / FourAtomsConstraintData.hhscoring / func / Func.hh
scores / fragment_scoring_utilities.hhtypes.hh
scores / FragmentAllAtomCrmsd.ccpose / annotated_sequence.hh
scores / FragmentAllAtomCrmsd.ccchemical / ChemicalManager.hh
scores / FragmentAllAtomCrmsd.ccimport_pose / import_pose.hh
scores / FragmentAllAtomCrmsd.ccid / NamedAtomID.hh
scores / FragmentAllAtomCrmsd.ccconformation / Residue.hh
scores / FragmentAllAtomCrmsd.hhpose / Pose.fwd.hh
scores / FragmentAllAtomCrmsd.hhtypes.hh
FragmentCandidate.ccoptimization / AtomTreeMinimizer.hh
FragmentCandidate.ccchemical / ChemicalManager.fwd.hh
FragmentCandidate.ccconformation / Conformation.hh
FragmentCandidate.ccscoring / Energies.hh
FragmentCandidate.ccpose / extra_pose_info_util.hh
FragmentCandidate.ccoptimization / MinimizerOptions.hh
FragmentCandidate.cckinematics / MoveMap.hh
FragmentCandidate.ccpack / task / PackerTask.hh
FragmentCandidate.ccscoring / rms_util.hh
FragmentCandidate.ccscoring / ScoreFunction.hh
FragmentCandidate.ccscoring / ScoreFunctionFactory.hh
FragmentCandidate.ccio / silent / SilentStructFactory.hh
FragmentCandidate.ccutil / SwitchResidueTypeSet.hh
FragmentCandidate.ccpack / task / TaskFactory.hh
FragmentCandidate.cctypes.hh
FragmentCandidate.ccpose / util.hh
FragmentCandidate.ccfragment / util.hh
FragmentCandidate.ccchemical / VariantType.hh
FragmentCandidate.hhfragment / BBTorsionSRFD.hh
FragmentCandidate.hhfragment / FragData.hh
FragmentCandidate.hhio / silent / SilentFileData.hh
FragmentCandidate.hhtypes.hh
scores / FragmentChunkCrms.ccpose / annotated_sequence.hh
scores / FragmentChunkCrms.ccchemical / ChemicalManager.hh
scores / FragmentChunkCrms.ccimport_pose / import_pose.hh
scores / FragmentChunkCrms.ccsequence / MatrixScoringScheme.hh
scores / FragmentChunkCrms.ccid / NamedAtomID.hh
scores / FragmentChunkCrms.ccsequence / NWAligner.hh
scores / FragmentChunkCrms.ccpose / Pose.hh
scores / FragmentChunkCrms.ccconformation / Residue.hh
scores / FragmentChunkCrms.ccsequence / ScoringScheme.fwd.hh
scores / FragmentChunkCrms.ccsequence / Sequence.hh
scores / FragmentChunkCrms.ccsequence / SequenceAlignment.hh
scores / FragmentChunkCrms.ccid / SequenceMapping.hh
scores / FragmentChunkCrms.ccsequence / SimpleScoringScheme.hh
scores / FragmentChunkCrms.hhid / AtomID.hh
scores / FragmentChunkCrms.hhid / AtomID_Map.hh
scores / FragmentChunkCrms.hhpose / Pose.fwd.hh
scores / FragmentChunkCrms.hhsequence / Sequence.fwd.hh
scores / FragmentChunkCrms.hhtypes.hh
FragmentComparatorBase.hhtypes.hh
scores / FragmentCrmsd.ccimport_pose / import_pose.hh
scores / FragmentCrmsd.ccid / NamedAtomID.hh
scores / FragmentCrmsd.ccpose / Pose.hh
scores / FragmentCrmsd.ccconformation / Residue.hh
scores / FragmentCrmsd.hhpose / Pose.fwd.hh
scores / FragmentCrmsd.hhtypes.hh
scores / FragmentCrmsdResDepth.ccimport_pose / import_pose.hh
scores / FragmentCrmsdResDepth.ccid / NamedAtomID.hh
scores / FragmentCrmsdResDepth.ccpose / Pose.hh
scores / FragmentCrmsdResDepth.ccconformation / Residue.hh
scores / FragmentCrmsdResDepth.hhpose / Pose.fwd.hh
scores / FragmentCrmsdResDepth.hhtypes.hh
scores / FragmentDME.ccimport_pose / import_pose.hh
scores / FragmentDME.ccid / NamedAtomID.hh
scores / FragmentDME.ccpose / Pose.hh
scores / FragmentDME.ccconformation / Residue.hh
scores / FragmentDME.hhpose / Pose.fwd.hh
scores / FragmentDME.hhtypes.hh
FragmentPicker.ccfragment / ConstantLengthFragSet.hh
FragmentPicker.ccpose / extra_pose_info_util.hh
FragmentPicker.ccfragment / FragID.hh
FragmentPicker.ccimport_pose / import_pose.hh
FragmentPicker.ccscoring / rms_util.hh
FragmentPicker.ccfragment / SecondaryStructure.hh
FragmentPicker.ccsequence / SequenceAlignment.hh
FragmentPicker.ccid / SequenceMapping.hh
FragmentPicker.ccio / silent / SilentFileData.hh
FragmentPicker.ccio / silent / SilentFileOptions.hh
FragmentPicker.ccio / silent / SilentStructFactory.hh
FragmentPicker.ccfragment / util.hh
FragmentPicker.ccpose / util.hh
FragmentPicker.ccsequence / util.hh
FragmentPicker.hhfragment / ConstantLengthFragSet.fwd.hh
FragmentPicker.hhfragment / SecondaryStructure.hh
FragmentPicker.hhsequence / SequenceProfile.hh
FragmentPicker.hhtypes.hh
FragmentScoreFilter.ccscoring / dssp / Dssp.hh
FragmentScoreFilter.ccpose / Pose.hh
FragmentScoreFilter.ccconformation / Residue.hh
FragmentScoreFilter.ccpose / ResidueIndexDescription.hh
FragmentScoreFilter.ccscoring / ScoreFunction.hh
FragmentScoreFilter.ccscoring / ScoreFunctionFactory.hh
FragmentScoreFilter.ccpose / selection.hh
FragmentScoreFilter.ccpack / task / TaskFactory.hh
FragmentScoreFilter.ccsequence / util.hh
FragmentScoreFilter.hhpose / Pose.fwd.hh
FragmentScoreFilter.hhpose / ResidueIndexDescription.fwd.hh
scores / FragmentScoreMap.hhtypes.hh
scores / FragmentScoringMethod.hhtypes.hh
FragmentSelectingRule.hhtypes.hh
GrabAllCollector.hhtypes.hh
scores / GunnCost.ccid / AtomID.hh
scores / GunnCost.ccpose / Pose.hh
scores / GunnCost.ccchemical / ResidueType.hh
scores / GunnCost.ccscoring / ScoreFunction.fwd.hh
scores / GunnCost.cctypes.hh
scores / GunnCost.hhpose / Pose.fwd.hh
scores / GunnCost.hhtypes.hh
scores / GunnCostScore.ccimport_pose / import_pose.hh
scores / GunnCostScore.hhpose / Pose.fwd.hh
scores / GunnCostScore.hhtypes.hh
scores / HydrophobicityProfileSimilarity.ccchemical / AA.hh
scores / HydrophobicityProfileSimilarity.cctypes.hh
scores / HydrophobicityProfileSimilarity.hhsequence / SequenceProfile.hh
scores / HydrophobicityProfileSimilarity.hhtypes.hh
scores / HydrophobicitySimilarity.cctypes.hh
scores / HydrophobicitySimilarity.hhtypes.hh
scores / InterbondAngleScore.ccscoring / func / Func.hh
scores / InterbondAngleScore.ccscoring / func / FuncFactory.hh
scores / InterbondAngleScore.ccscoring / func / MinMultiHarmonicFunc.hh
scores / InterbondAngleScore.hhscoring / func / FuncFactory.hh
scores / JCoupling.hhtypes.hh
JCouplingIO.cctypes.hh
JCouplingIO.hhtypes.hh
LAMBEGO_IO.cctypes.hh
LAMBEGO_IO.hhtypes.hh
scores / LAMBEGO_Similarity.cctypes.hh
scores / LAMBEGO_Similarity.hhtypes.hh
LazySortedVector1.hhtypes.hh
scores / MidPhiOut.hhtypes.hh
scores / MidPsiOut.hhtypes.hh
nonlocal / NonlocalFrags.ccconformation / Conformation.hh
nonlocal / NonlocalFrags.ccscoring / Energies.hh
nonlocal / NonlocalFrags.ccpose / extra_pose_info_util.hh
nonlocal / NonlocalFrags.cckinematics / FoldTree.hh
nonlocal / NonlocalFrags.cckinematics / MoveMap.hh
nonlocal / NonlocalFrags.ccpose / PDBInfo.hh
nonlocal / NonlocalFrags.ccpose / Pose.hh
nonlocal / NonlocalFrags.ccconformation / Residue.hh
nonlocal / NonlocalFrags.ccscoring / rms_util.hh
nonlocal / NonlocalFrags.ccscoring / ScoreFunction.hh
nonlocal / NonlocalFrags.ccscoring / ScoreFunctionFactory.hh
nonlocal / NonlocalFrags.ccpose / subpose_manipulation_util.hh
nonlocal / NonlocalFrags.ccpose / util.hh
nonlocal / NonlocalFrags.hhpose / Pose.fwd.hh
nonlocal / NonlocalPair.hhtypes.hh
scores / PartialSecondarySimilarity.ccfragment / SecondaryStructure.hh
scores / PartialSecondarySimilarity.cctypes.hh
scores / PartialSecondarySimilarity.hhfragment / SecondaryStructure.hh
scores / PartialSecondarySimilarity.hhtypes.hh
scores / PCS_FragDistance.hhtypes.hh
PdbIdChunkFilter.hhtypes.hh
scores / Phi.cctypes.hh
scores / Phi.hhtypes.hh
scores / PhiPsiRmsd.ccimport_pose / import_pose.hh
scores / PhiPsiRmsd.ccpose / Pose.hh
scores / PhiPsiRmsd.hhtypes.hh
scores / PhiPsiSquareWell.ccimport_pose / import_pose.hh
scores / PhiPsiSquareWell.ccpose / Pose.hh
scores / PhiPsiSquareWell.hhtypes.hh
PhiPsiTalosIO.cctypes.hh
PhiPsiTalosIO.hhtypes.hh
scores / ProfileScore.ccsequence / ScoringScheme.hh
scores / ProfileScore.ccsequence / ScoringSchemeFactory.hh
scores / ProfileScore.ccsequence / SequenceProfile.hh
scores / ProfileScore.cctypes.hh
scores / ProfileScore.hhsequence / ScoringScheme.hh
scores / ProfileScore.hhsequence / SequenceProfile.hh
scores / ProfileScore.hhtypes.hh
scores / ProfileScoreBlosum62.ccchemical / AA.hh
scores / ProfileScoreBlosum62.ccsequence / MatrixScoringScheme.hh
scores / ProfileScoreBlosum62.ccsequence / SequenceProfile.hh
scores / ProfileScoreBlosum62.cctypes.hh
scores / ProfileScoreBlosum62.hhtypes.hh
scores / ProfileScoreDistWeight.ccsequence / SequenceProfile.hh
scores / ProfileScoreDistWeight.cctypes.hh
scores / ProfileScoreDistWeight.hhfragment / SecondaryStructure.hh
scores / ProfileScoreDistWeight.hhsequence / SequenceProfile.hh
scores / ProfileScoreDistWeight.hhtypes.hh
scores / ProfileScoreL1.ccsequence / SequenceProfile.hh
scores / ProfileScoreL1.cctypes.hh
scores / ProfileScoreL1.hhtypes.hh
scores / ProfileScoreStructL1.ccsequence / SequenceProfile.hh
scores / ProfileScoreStructL1.cctypes.hh
scores / ProfileScoreStructL1.hhsequence / SequenceProfile.hh
scores / ProfileScoreStructL1.hhtypes.hh
scores / ProfileScoreSubMatrix.ccchemical / AA.hh
scores / ProfileScoreSubMatrix.ccsequence / MatrixScoringScheme.hh
scores / ProfileScoreSubMatrix.ccsequence / SequenceProfile.hh
scores / ProfileScoreSubMatrix.cctypes.hh
scores / ProfileScoreSubMatrix.hhtypes.hh
scores / ProlinePhiScore.cctypes.hh
scores / ProlinePhiScore.hhtypes.hh
scores / Psi.cctypes.hh
scores / Psi.hhtypes.hh
quota / QuotaCollector.ccfragment / SecondaryStructure.hh
quota / QuotaCollector.hhfragment / SecondaryStructure.fwd.hh
quota / QuotaConfig.cctypes.hh
quota / QuotaConfig.hhtypes.hh
quota / QuotaPool.hhtypes.hh
quota / QuotaSelector.cctypes.hh
quota / QuotaSelector.hhtypes.hh
scores / RamaScore.ccfragment / SecondaryStructure.fwd.hh
scores / RamaScore.cctypes.hh
scores / RamaScore.hhfragment / SecondaryStructure.fwd.hh
scores / RamaScore.hhtypes.hh
scores / RDCScore.ccpose / annotated_sequence.hh
scores / RDCScore.ccchemical / ChemicalManager.hh
scores / RDCScore.cckinematics / Jump.hh
scores / RDCScore.ccpose / Pose.hh
scores / RDCScore.ccscoring / ResidualDipolarCoupling.hh
scores / RDCScore.hhscoring / ResidualDipolarCoupling.hh
scores / RDCScore.hhtypes.hh
scores / ScoreEValuator.ccsequence / ScoringScheme.hh
scores / ScoreEValuator.ccsequence / ScoringSchemeFactory.hh
scores / ScoreEValuator.ccsequence / SequenceProfile.hh
scores / ScoreEValuator.cctypes.hh
scores / ScoreEValuator.hhtypes.hh
scores / SecondaryIdentity.cctypes.hh
scores / SecondaryIdentity.hhtypes.hh
scores / SecondarySimilarity.ccfragment / SecondaryStructure.hh
scores / SecondarySimilarity.cctypes.hh
scores / SecondarySimilarity.hhfragment / SecondaryStructure.hh
scores / SecondarySimilarity.hhtypes.hh
quota / SecondaryStructurePool.cctypes.hh
quota / SecondaryStructurePool.hhtypes.hh
scores / SequenceIdentity.cctypes.hh
scores / SequenceIdentity.hhtypes.hh
SidechainContactDistCutoff.ccchemical / AA.hh
SidechainContactDistCutoff.cctypes.hh
SidechainContactDistCutoff.hhtypes.hh
scores / SolventAccessibility.cctypes.hh
scores / SolventAccessibility.hhtypes.hh
scores / TalosSSSimilarity.ccfragment / SecondaryStructure.hh
scores / TalosSSSimilarity.cctypes.hh
scores / TalosSSSimilarity.hhfragment / SecondaryStructure.hh
scores / TalosSSSimilarity.hhtypes.hh
TorsionBinIO.cctypes.hh
TorsionBinIO.hhtypes.hh
scores / TorsionBinSimilarity.cctypes.hh
scores / TorsionBinSimilarity.hhtypes.hh
VallChunk.ccpose / Pose.hh
VallChunk.ccsequence / SequenceProfile.hh
VallChunk.hhpose / Pose.fwd.hh
VallChunk.hhsequence / SequenceProfile.fwd.hh
VallProvider.ccpose / annotated_sequence.hh
VallProvider.ccchemical / ChemicalManager.hh
VallProvider.ccpose / Pose.hh
VallProvider.ccsequence / SequenceProfile.hh
VallProvider.cctypes.hh
VallProvider.hhpose / Pose.hh
VallProvider.hhsequence / SequenceProfile.hh
VallProvider.hhtypes.hh
VallResidue.ccchemical / AA.hh
VallResidue.ccfragment / BBTorsionSRFD.hh
VallResidue.hhchemical / AA.hh
VallResidue.hhfragment / BBTorsionSRFD.fwd.hh
VallResidue.hhtypes.hh