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enzdes → core Relation

File in src/protocols/enzdesIncludes file in src/core
AddLigandMotifRotamersOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
AddorRemoveCsts.ccchemical / ChemicalManager.hh
AddorRemoveCsts.ccpose / Pose.hh
AddorRemoveCsts.ccconformation / Residue.hh
AddorRemoveCsts.ccscoring / ScoreFunction.hh
AddorRemoveCsts.hhpose / Pose.fwd.hh
AddorRemoveCsts.hhscoring / ScoreFunction.fwd.hh
AddorRemoveCsts.hhtypes.hh
AddRigidBodyLigandConfsCreator.hhpack / task / operation / TaskOperationCreator.hh
BackboneSampler.cckinematics / FoldTree.hh
BackboneSampler.cckinematics / Jump.hh
BackboneSampler.cckinematics / MoveMap.hh
BackboneSampler.ccpose / Pose.hh
BackboneSampler.ccconformation / Residue.hh
BackboneSampler.ccscoring / ScoreFunction.hh
BackboneSampler.cctypes.hh
BackboneSampler.ccpack / rotamer_set / UnboundRotamersOperation.hh
BackboneSampler.hhpose / Pose.fwd.hh
BackboneSampler.hhtypes.hh
DesignVsNativeComparison.ccscoring / constraints / ConstraintSet.hh
DesignVsNativeComparison.ccscoring / Energies.hh
DesignVsNativeComparison.ccimport_pose / import_pose.hh
DesignVsNativeComparison.ccpose / Pose.hh
DesignVsNativeComparison.ccscoring / ScoreFunction.hh
DesignVsNativeComparison.hhpose / Pose.fwd.hh
DesignVsNativeComparison.hhscoring / ScoreFunction.fwd.hh
DesignVsNativeComparison.hhio / silent / SilentEnergy.hh
DetectProteinLigandInterfaceOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
enzdes_util.ccid / AtomID.hh
enzdes_util.ccpose / datacache / CacheableDataType.hh
enzdes_util.ccscoring / Energies.hh
enzdes_util.ccscoring / methods / EnergyMethodOptions.hh
enzdes_util.ccscoring / func / Func.hh
enzdes_util.ccpack / task / IGEdgeReweightContainer.hh
enzdes_util.ccimport_pose / import_pose.hh
enzdes_util.ccpack / packer_neighbors.hh
enzdes_util.ccpack / task / PackerTask.hh
enzdes_util.ccpose / PDBInfo.hh
enzdes_util.ccpose / Pose.hh
enzdes_util.ccconformation / Residue.hh
enzdes_util.ccchemical / ResidueTypeSet.fwd.hh
enzdes_util.ccpack / rotamer_set / RotamerSet.hh
enzdes_util.ccpack / rotamer_set / RotamerSetFactory.hh
enzdes_util.ccpack / rotamer_set / RotamerSetOperation.hh
enzdes_util.ccscoring / ScoreFunction.hh
enzdes_util.ccpack / task / TaskFactory.hh
enzdes_util.ccpose / util.hh
enzdes_util.hhpack / task / PackerTask.fwd.hh
enzdes_util.hhpose / Pose.fwd.hh
enzdes_util.hhconformation / Residue.fwd.hh
enzdes_util.hhchemical / ResidueType.fwd.hh
enzdes_util.hhscoring / ScoreFunction.fwd.hh
EnzdesBaseProtocol.ccscoring / constraints / BoundConstraint.hh
EnzdesBaseProtocol.ccchemical / ChemicalManager.hh
EnzdesBaseProtocol.ccscoring / constraints / ConstraintSet.hh
EnzdesBaseProtocol.ccscoring / dssp / Dssp.hh
EnzdesBaseProtocol.ccscoring / Energies.hh
EnzdesBaseProtocol.ccscoring / methods / EnergyMethodOptions.hh
EnzdesBaseProtocol.cckinematics / FoldTree.hh
EnzdesBaseProtocol.ccimport_pose / import_pose.hh
EnzdesBaseProtocol.cckinematics / MoveMap.hh
EnzdesBaseProtocol.ccpack / task / PackerTask.hh
EnzdesBaseProtocol.ccpose / PDBInfo.hh
EnzdesBaseProtocol.ccpose / Pose.hh
EnzdesBaseProtocol.ccconformation / Residue.hh
EnzdesBaseProtocol.ccchemical / ResidueProperties.hh
EnzdesBaseProtocol.ccchemical / ResidueTypeSet.hh
EnzdesBaseProtocol.ccscoring / ScoreFunction.hh
EnzdesBaseProtocol.ccscoring / ScoreFunctionFactory.hh
EnzdesBaseProtocol.ccid / SequenceMapping.hh
EnzdesBaseProtocol.ccpack / task / TaskFactory.hh
EnzdesBaseProtocol.ccpack / task / operation / TaskOperations.hh
EnzdesBaseProtocol.ccpack / rotamer_set / UnboundRotamersOperation.hh
EnzdesBaseProtocol.ccchemical / util.hh
EnzdesBaseProtocol.ccpose / variant_util.hh
EnzdesBaseProtocol.hhscoring / EnergyMap.fwd.hh
EnzdesBaseProtocol.hhscoring / EnergyMap.hh
EnzdesBaseProtocol.hhpack / task / PackerTask.fwd.hh
EnzdesBaseProtocol.hhpose / Pose.fwd.hh
EnzdesBaseProtocol.hhchemical / ResidueTypeSet.fwd.hh
EnzdesBaseProtocol.hhid / SequenceMapping.fwd.hh
EnzdesFixBBProtocol.ccpack / task / PackerTask.hh
EnzdesFixBBProtocol.ccpose / Pose.hh
EnzdesFixBBProtocol.ccscoring / ScoreFunction.hh
EnzdesFixBBProtocol.hhpose / Pose.fwd.hh
EnzdesFlexBBProtocol.ccfragment / BBTorsionAndAnglesSRFD.hh
EnzdesFlexBBProtocol.ccpose / datacache / cacheable_observers.hh
EnzdesFlexBBProtocol.ccpose / datacache / CacheableObserverType.hh
EnzdesFlexBBProtocol.ccscoring / Energies.hh
EnzdesFlexBBProtocol.ccscoring / EnergyGraph.hh
EnzdesFlexBBProtocol.ccscoring / EnergyMap.hh
EnzdesFlexBBProtocol.cckinematics / FoldTree.hh
EnzdesFlexBBProtocol.ccfragment / FragData.hh
EnzdesFlexBBProtocol.ccpack / task / IGEdgeReweightContainer.hh
EnzdesFlexBBProtocol.cckinematics / MoveMap.hh
EnzdesFlexBBProtocol.ccpose / datacache / ObserverCache.hh
EnzdesFlexBBProtocol.ccpack / pack_rotamers.hh
EnzdesFlexBBProtocol.ccpack / packer_neighbors.hh
EnzdesFlexBBProtocol.ccpack / task / PackerTask.hh
EnzdesFlexBBProtocol.ccpose / PDBInfo.hh
EnzdesFlexBBProtocol.ccpack / interaction_graph / PDInteractionGraph.hh
EnzdesFlexBBProtocol.ccpose / Pose.hh
EnzdesFlexBBProtocol.ccchemical / ResidueType.hh
EnzdesFlexBBProtocol.ccchemical / ResidueTypeSet.hh
EnzdesFlexBBProtocol.ccscoring / rms_util.hh
EnzdesFlexBBProtocol.ccscoring / rms_util.tmpl.hh
EnzdesFlexBBProtocol.ccpack / rotamer_set / RotamerSetOperation.hh
EnzdesFlexBBProtocol.ccpack / rotamer_set / RotamerSets.hh
EnzdesFlexBBProtocol.ccscoring / ScoreFunction.hh
EnzdesFlexBBProtocol.ccid / SequenceMapping.hh
EnzdesFlexBBProtocol.ccpack / task / TaskFactory.hh
EnzdesFlexBBProtocol.ccscoring / TenANeighborGraph.hh
EnzdesFlexBBProtocol.ccfragment / util.hh
EnzdesFlexBBProtocol.ccpose / variant_util.hh
EnzdesFlexBBProtocol.ccchemical / VariantType.hh
EnzdesFlexBBProtocol.hhfragment / FragData.fwd.hh
EnzdesFlexBBProtocol.hhfragment / Frame.hh
EnzdesFlexBBProtocol.hhpose / Pose.hh
EnzdesJobInputter.ccpose / datacache / cacheable_observers.hh
EnzdesJobInputter.ccpose / datacache / CacheableObserverType.hh
EnzdesJobInputter.ccpose / datacache / ObserverCache.hh
EnzdesJobInputter.ccpose / Pose.hh
EnzdesJobInputter.hhpose / Pose.fwd.hh
EnzdesJobOutputter.ccpose / Pose.hh
EnzdesJobOutputter.ccio / silent / ScoreFileSilentStruct.hh
EnzdesJobOutputter.ccio / silent / SilentEnergy.hh
EnzdesJobOutputter.ccio / silent / SilentFileData.hh
EnzdesJobOutputter.ccio / silent / SilentFileOptions.hh
EnzdesJobOutputter.hhio / silent / SilentFileData.fwd.hh
EnzdesMovers.ccid / AtomID.hh
EnzdesMovers.ccscoring / constraints / AtomPairConstraint.hh
EnzdesMovers.ccconformation / Conformation.hh
EnzdesMovers.ccscoring / constraints / Constraint.hh
EnzdesMovers.ccscoring / constraints / Constraints.hh
EnzdesMovers.ccscoring / constraints / ConstraintSet.hh
EnzdesMovers.cckinematics / FoldTree.hh
EnzdesMovers.ccscoring / func / Func.fwd.hh
EnzdesMovers.cckinematics / Jump.hh
EnzdesMovers.ccscoring / constraints / MultiConstraint.hh
EnzdesMovers.ccpack / task / PackerTask.hh
EnzdesMovers.ccpose / Pose.hh
EnzdesMovers.ccconformation / Residue.hh
EnzdesMovers.ccchemical / ResidueTypeSet.fwd.hh
EnzdesMovers.ccscoring / rms_util.tmpl.hh
EnzdesMovers.ccscoring / ScoreFunction.hh
EnzdesMovers.ccscoring / ScoreFunctionFactory.hh
EnzdesMovers.ccpack / task / TaskFactory.hh
EnzdesMovers.ccpack / task / operation / TaskOperations.hh
EnzdesMovers.hhscoring / constraints / AtomPairConstraint.fwd.hh
EnzdesMovers.hhscoring / constraints / MultiConstraint.fwd.hh
EnzdesMovers.hhpack / task / PackerTask.fwd.hh
EnzdesMovers.hhpose / Pose.fwd.hh
EnzdesMovers.hhscoring / ScoreFunction.fwd.hh
EnzdesMovers.hhio / silent / SilentEnergy.hh
EnzdesMovers.hhpack / task / TaskFactory.fwd.hh
EnzdesTaskOperations.ccpose / datacache / cacheable_observers.hh
EnzdesTaskOperations.ccpose / datacache / CacheableObserverType.hh
EnzdesTaskOperations.cckinematics / FoldTree.hh
EnzdesTaskOperations.ccpack / task / IGEdgeReweightContainer.hh
EnzdesTaskOperations.ccpose / datacache / ObserverCache.hh
EnzdesTaskOperations.ccpack / task / PackerTask.hh
EnzdesTaskOperations.ccpose / Pose.hh
EnzdesTaskOperations.ccpack / task / ResfileReader.hh
EnzdesTaskOperations.ccconformation / Residue.hh
EnzdesTaskOperations.ccpack / dunbrack / RotamerLibrary.hh
EnzdesTaskOperations.ccpack / rotamers / SingleResidueRotamerLibrary.hh
EnzdesTaskOperations.ccpack / rotamers / SingleResidueRotamerLibraryFactory.hh
EnzdesTaskOperations.ccpack / task / operation / task_op_schemas.hh
EnzdesTaskOperations.ccpack / task / operation / TaskOperations.hh
EnzdesTaskOperations.cctypes.hh
EnzdesTaskOperations.ccpose / symmetry / util.hh
EnzdesTaskOperations.ccconformation / symmetry / util.hh
EnzdesTaskOperations.ccchemical / VariantType.hh
EnzdesTaskOperations.hhpose / Pose.fwd.hh
EnzdesTaskOperations.hhpack / task / operation / TaskOperation.hh
EnzdesTaskOperations.hhtypes.hh
EnzFilters.ccid / AtomID.hh
EnzFilters.ccpose / datacache / cacheable_observers.hh
EnzFilters.ccpose / datacache / CacheableObserverType.hh
EnzFilters.ccpose / metrics / CalculatorFactory.hh
EnzFilters.ccchemical / ChemicalManager.hh
EnzFilters.ccconformation / Conformation.hh
EnzFilters.ccscoring / constraints / ConstraintSet.hh
EnzFilters.ccscoring / Energies.hh
EnzFilters.cckinematics / FoldTree.hh
EnzFilters.ccpose / metrics / simple_calculators / InterfaceDeltaEnergeticsCalculator.hh
EnzFilters.ccpose / metrics / simple_calculators / InterfaceNeighborDefinitionCalculator.hh
EnzFilters.ccpose / metrics / simple_calculators / InterfaceSasaDefinitionCalculator.hh
EnzFilters.ccpose / datacache / ObserverCache.hh
EnzFilters.ccpack / task / PackerTask.hh
EnzFilters.ccpose / PDBInfo.hh
EnzFilters.ccpose / PDBPoseMap.hh
EnzFilters.ccpose / Pose.hh
EnzFilters.ccpose / metrics / PoseMetricCalculatorBase.fwd.hh
EnzFilters.ccselect / residue_selector / ResidueSelector.hh
EnzFilters.ccchemical / ResidueType.hh
EnzFilters.ccchemical / ResidueTypeSet.hh
EnzFilters.ccscoring / rms_util.tmpl.hh
EnzFilters.ccscoring / ScoreFunction.hh
EnzFilters.ccscoring / ScoreFunctionFactory.hh
EnzFilters.ccscoring / ScoreType.hh
EnzFilters.ccpose / selection.hh
EnzFilters.cctypes.hh
EnzFilters.ccselect / util.hh
EnzFilters.hhpose / Pose.fwd.hh
EnzFilters.hhselect / residue_selector / ResidueSelector.fwd.hh
EnzFilters.hhchemical / ResidueType.fwd.hh
EnzFilters.hhscoring / ScoreFunction.hh
EnzFilters.hhscoring / ScoreType.hh
EnzFilters.hhio / silent / SilentEnergy.hh
EnzRepackMinimize.ccscoring / constraints / ConstraintSet.hh
EnzRepackMinimize.cckinematics / MoveMap.hh
EnzRepackMinimize.ccpack / task / PackerTask.hh
EnzRepackMinimize.ccpose / Pose.hh
EnzRepackMinimize.ccconformation / Residue.hh
EnzRepackMinimize.ccscoring / ScoreFunction.hh
EnzRepackMinimize.ccpack / task / TaskFactory.hh
EnzRepackMinimize.ccpack / task / operation / TaskOperations.hh
EnzRepackMinimize.hhpack / task / PackerTask.fwd.hh
EnzRepackMinimize.hhpose / Pose.fwd.hh
EnzRepackMinimize.hhscoring / ScoreFunction.fwd.hh
EnzRepackMinimize.hhpack / task / TaskFactory.fwd.hh
EnzRepackMinimize.hhtypes.hh
ModifyStoredLigandRBConfsMovers.ccid / AtomID.hh
ModifyStoredLigandRBConfsMovers.cckinematics / FoldTree.hh
ModifyStoredLigandRBConfsMovers.cckinematics / MoveMap.hh
ModifyStoredLigandRBConfsMovers.ccpack / task / PackerTask.hh
ModifyStoredLigandRBConfsMovers.ccio / pdb / pdb_writer.hh
ModifyStoredLigandRBConfsMovers.ccpose / Pose.hh
ModifyStoredLigandRBConfsMovers.ccconformation / Residue.hh
ModifyStoredLigandRBConfsMovers.ccpack / rotamer_trials.hh
ModifyStoredLigandRBConfsMovers.ccscoring / ScoreFunction.hh
ModifyStoredLigandRBConfsMovers.ccpack / task / TaskFactory.hh
ModifyStoredLigandRBConfsMovers.hhpose / Pose.fwd.hh
ModifyStoredLigandRBConfsMovers.hhconformation / Residue.fwd.hh
ModifyStoredLigandRBConfsMovers.hhscoring / ScoreFunction.fwd.hh
ModifyStoredLigandRBConfsMovers.hhtypes.hh
PackRotamersMoverPartGreedy.ccscoring / Energies.hh
PackRotamersMoverPartGreedy.ccscoring / EnergyGraph.hh
PackRotamersMoverPartGreedy.ccpack / task / IGEdgeReweightContainer.hh
PackRotamersMoverPartGreedy.cckinematics / MoveMap.hh
PackRotamersMoverPartGreedy.ccpack / task / PackerTask.hh
PackRotamersMoverPartGreedy.ccpose / Pose.hh
PackRotamersMoverPartGreedy.ccconformation / Residue.hh
PackRotamersMoverPartGreedy.ccselect / residue_selector / ResidueSelector.hh
PackRotamersMoverPartGreedy.ccscoring / ScoreFunction.hh
PackRotamersMoverPartGreedy.ccscoring / ScoreFunctionFactory.hh
PackRotamersMoverPartGreedy.ccpose / selection.hh
PackRotamersMoverPartGreedy.ccpack / task / TaskFactory.hh
PackRotamersMoverPartGreedy.ccpack / task / operation / TaskOperations.hh
PackRotamersMoverPartGreedy.ccselect / util.hh
PackRotamersMoverPartGreedy.hhpack / task / PackerTask.fwd.hh
PackRotamersMoverPartGreedy.hhpose / Pose.fwd.hh
PackRotamersMoverPartGreedy.hhselect / residue_selector / ResidueSelector.fwd.hh
PackRotamersMoverPartGreedy.hhscoring / ScoreFunction.fwd.hh
PackRotamersMoverPartGreedy.hhpack / task / TaskFactory.fwd.hh
PackRotamersMoverPartGreedy.hhtypes.hh
ProteinLigandInterfaceUpweighterOperationCreator.hhpack / task / operation / TaskOperationCreator.hh
RemoveLigandFilter.cckinematics / MoveMap.hh
RemoveLigandFilter.ccpose / Pose.hh
RemoveLigandFilter.ccscoring / rms_util.tmpl.hh
RemoveLigandFilter.ccscoring / ScoreFunction.hh
RemoveLigandFilter.ccscoring / ScoreFunctionFactory.hh
RemoveLigandFilter.ccselect / residue_selector / TrueResidueSelector.hh
RemoveLigandFilter.cctypes.hh
RemoveLigandFilter.hhpose / Pose.fwd.hh
RemoveLigandFilter.hhio / silent / SilentEnergy.hh
SecondaryMatchProtocol.ccio / pdb / build_pose_as_is.hh
SecondaryMatchProtocol.ccpose / datacache / CacheableDataType.hh
SecondaryMatchProtocol.ccscoring / Energies.hh
SecondaryMatchProtocol.ccscoring / EnergyGraph.hh
SecondaryMatchProtocol.cckinematics / FoldTree.hh
SecondaryMatchProtocol.ccscoring / func / Func.hh
SecondaryMatchProtocol.ccpack / task / PackerTask.hh
SecondaryMatchProtocol.ccpose / PDBInfo.hh
SecondaryMatchProtocol.ccpose / Pose.hh
SecondaryMatchProtocol.ccconformation / Residue.hh
SecondaryMatchProtocol.ccchemical / ResidueProperties.hh
SecondaryMatchProtocol.ccchemical / ResidueType.hh
SecondaryMatchProtocol.ccchemical / ResidueTypeSet.hh
SecondaryMatchProtocol.ccscoring / ScoreFunction.hh
SecondaryMatchProtocol.ccscoring / ScoreFunctionFactory.hh
SecondaryMatchProtocol.ccpack / task / TaskFactory.hh
SecondaryMatchProtocol.ccchemical / util.hh
SecondaryMatchProtocol.ccpose / variant_util.hh
SecondaryMatchProtocol.hhpose / Pose.fwd.hh
SecondaryMatchProtocol.hhconformation / Residue.fwd.hh
SecondaryMatchProtocol.hhchemical / ResidueType.fwd.hh
SecondaryMatchProtocol.hhscoring / ScoreFunction.fwd.hh
SetCatalyticResPackBehaviorCreator.hhpack / task / operation / TaskOperationCreator.hh