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conformation Directory Reference
Directory dependency graph for conformation:
src/core/conformation

Directories

directory  carbohydrates
 
directory  membrane
 
directory  orbitals
 
directory  parametric
 
directory  signals
 
directory  symmetry
 

Files

file  AbstractRotamerTrie.cc
 Auto-generated serialization template functions.
 
file  AbstractRotamerTrie.fwd.hh
 Forward declaration of the AbstractRotamerTrie class, defined in the conformation layer.
 
file  AbstractRotamerTrie.hh
 Base class from which all Tries will derive; this class is a handle for the tries that will be defined in core/scoring, but which have to be stored by the RotamerSetBase class defined in core/conformation.
 
file  Atom.cc
 Method definitions for conformation::Atom.
 
file  Atom.fwd.hh
 Class declaration for conformation::Atom.
 
file  Atom.hh
 Class definitions for conformation::Atom.
 
file  AtomGraph.cc
 
file  AtomGraph.fwd.hh
 
file  AtomGraph.hh
 
file  AtomGraphData.fwd.hh
 
file  AtomGraphData.hh
 
file  Conformation.cc
 Method definitions for the Conformation class.
 
file  Conformation.fwd.hh
 forward declaration for Conformation.hh
 
file  Conformation.hh
 conformation container
 
file  ConformationTests.fwd.hh
 
file  find_neighbors.fwd.hh
 
file  find_neighbors.hh
 
file  PointGraph.cc
 Graph for detecting neighbors; vertices store points, edges store square distances.
 
file  PointGraph.fwd.hh
 Graph for detecting neighbors; vertices store points, edges store square distances.
 
file  PointGraph.hh
 Graph for detecting neighbors; vertices store points, edges store square distances.
 
file  PointGraphData.cc
 Serlialization routines for the two types templated upon to define the PointGraph.
 
file  PointGraphData.fwd.hh
 
file  PointGraphData.hh
 classes to work with UpperEdgeGraph for fast neighbor detection
 
file  ppo_torsion_bin.cc
 
file  ppo_torsion_bin.fwd.hh
 An enumeration to represent a binning of the phi/psi/omega torsions.
 
file  ppo_torsion_bin.hh
 Functions for assigning and manipulating the phi/psi/omega torsion bins.
 
file  PseudoBond.cc
 
file  PseudoBond.fwd.hh
 
file  PseudoBond.hh
 
file  Residue.cc
 Method definitions for the Residue class.
 
file  Residue.functions.cc
 Implementation of non-member functions that operate on Residue objects.
 
file  Residue.functions.hh
 Header file for non-member functions that operate on Residue objects.
 
file  Residue.fwd.hh
 
file  Residue.hh
 Method declarations and simple accessor definitions for the Residue class.
 
file  residue_datacache.hh
 enum for storing data in the Residue's datacache
 
file  ResidueFactory.cc
 
file  ResidueFactory.hh
 
file  ResidueKinWriter.cc
 Class to write kinemage-formatted output for Residue and Conformation.
 
file  ResidueKinWriter.fwd.hh
 
file  ResidueKinWriter.hh
 Class to write kinemage-formatted output for Residue and Conformation.
 
file  ResidueMatcher.cc
 
file  ResidueMatcher.fwd.hh
 
file  ResidueMatcher.hh
 
file  RotamerSetBase.cc
 RotamerSetBase class implementation.
 
file  RotamerSetBase.fwd.hh
 
file  RotamerSetBase.hh
 Abstract base class for a class that holds disembodied Residues (ie not contained within a Pose) as Rotamers.
 
file  RotamerSetCacheableDataType.hh
 enum for the DataCache within the RotamerSet class; EnergyMethods in core/scoring forward-declare themselves here if they intend to cache data within the the RotamerSet.
 
file  UltraLightResidue.cc
 
file  UltraLightResidue.fwd.hh
 
file  UltraLightResidue.hh
 an extremely light residue class used for fast direct cartesian space transforms on ligands.
 
file  util.cc
 
file  util.hh