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kinematics Directory Reference
Directory dependency graph for kinematics:
src/core/kinematics

Directories

directory  jacobian
 
directory  tree
 

Files

file  AtomPointer.fwd.hh
 kinematics::AtomPointer2D forward declarations header
 
file  AtomPointer.hh
 Map from Atom identifiers to Atom pointers.
 
file  AtomTree.cc
 Atom tree class.
 
file  AtomTree.fwd.hh
 kinematics::AtomTree forward declarations header
 
file  AtomTree.hh
 Atom tree class.
 
file  AtomWithDOFChange.cc
 
file  AtomWithDOFChange.fwd.hh
 Data structure for output-sensitie refold data class forward declaration.
 
file  AtomWithDOFChange.hh
 Data structure for output-sensitie refold data class declaration.
 
file  constants.cc
 
file  constants.hh
 
file  DomainMap.fwd.hh
 
file  DomainMap.hh
 
file  Edge.cc
 Fold tree edge class.
 
file  Edge.fwd.hh
 Kinematics Edge forward declarations header.
 
file  Edge.hh
 Fold tree edge class.
 
file  Exceptions.hh
 Fold tree class.
 
file  FoldTree.cc
 Fold tree class.
 
file  FoldTree.fwd.hh
 kinematics::FoldTree forward declarations header
 
file  FoldTree.hh
 Fold tree class.
 
file  Jump.cc
 Kinematics Jump class.
 
file  Jump.fwd.hh
 Kinematics Jump forward declarations header.
 
file  Jump.hh
 Kinematics Jump class.
 
file  MinimizerMapBase.cc
 Kinematics.
 
file  MinimizerMapBase.fwd.hh
 Forward declaration of the minimizer-map base class for communicating between an AtomTree and the class that will use the AtomTree to perform some gradient-based minimization.
 
file  MinimizerMapBase.hh
 Deriviative classes from this base class will implement three virtual functions allowing the AtomTree to communicate with an outside Minimizer about how the degrees of freedom in the AtomTree should be minimized.
 
file  MoveMap.cc
 Method definitions for the MoveMap.
 
file  MoveMap.fwd.hh
 Kinematics MoveMap forward declarations header.
 
file  MoveMap.hh
 Declarations for the MoveMap class.
 
file  ResidueCoordinateChangeList.cc
 
file  ResidueCoordinateChangeList.fwd.hh
 AtomTree/Conformation communication vector class forward declaration.
 
file  ResidueCoordinateChangeList.hh
 
file  RT.cc
 Rotation + translation class.
 
file  RT.fwd.hh
 Kinematics RT forward declarations header.
 
file  RT.hh
 Rotation + translation class.
 
file  ShortestPathInFoldTree.cc
 helper class to FoldTree: allows to measure distance in fold-trees
 
file  ShortestPathInFoldTree.fwd.hh
 kinematics::ShortestPathInFoldTree forward declarations header
 
file  ShortestPathInFoldTree.hh
 Fold tree helper class.
 
file  Stub.cc
 Stub class.
 
file  Stub.fwd.hh
 Kinematics Stub forward declarations header.
 
file  Stub.hh
 Stub class.
 
file  types.hh
 core::kinematics package type declarations
 
file  util.cc
 Kinematics utility functions.
 
file  util.hh
 Kinematics utility functions.