Rosetta  2020.50
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pack Directory Reference
Directory dependency graph for pack:
src/core/pack

Directories

directory  annealer
 
directory  dunbrack
 
directory  guidance_scoreterms
 
directory  hbonds
 
directory  interaction_graph
 
directory  palette
 
directory  rotamer_set
 
directory  rotamers
 
directory  scmin
 
directory  task
 

Files

file  make_symmetric_task.cc
 
file  make_symmetric_task.hh
 utility functions for handling with symmetric conformations
 
file  min_pack.cc
 pack rotamers with minimization module
 
file  min_pack.hh
 pack and minimize sidechains
 
file  optimizeH.cc
 standard hydrogen optimization subroutine
 
file  optimizeH.hh
 declaration of standard hydrogen optimization subroutine
 
file  pack_missing_sidechains.cc
 function to fix missing sidechains in input PDBs (especially those surface lysines that get sidechain-backbone clashes!)
 
file  pack_missing_sidechains.hh
 header for subroutine to run rotamer trials on residues missing sidechain density in a PDB
 
file  pack_rotamers.cc
 pack rotamers module
 
file  pack_rotamers.hh
 pack rotamers module header
 
file  packer_neighbors.cc
 creates a graph that describes the possible connectivity induced by designing-in larger side chains
 
file  packer_neighbors.hh
 creates a graph that describes the possible connectivity induced by designing-in larger side chains
 
file  rotamer_trials.cc
 rotamer trials module
 
file  rotamer_trials.hh
 rotamer trials module header
 
file  rtmin.cc
 rotamer trials with minimization module header. Originally concieved of and implemented in Rosetta++ by Chu Wang.
 
file  rtmin.hh
 rotamer trials with minimization module header
 
file  util.cc
 Simple utilities for computing rotamer recovery between 2 poses.
 
file  util.hh
 Simple utilities for computing rotamer recovery between 2 poses.