Rosetta  2020.46
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toolbox Directory Reference
Directory dependency graph for toolbox:
src/protocols/toolbox

Directories

directory  match_enzdes_util
 
directory  pose_manipulation
 
directory  rigid_body
 
directory  rotamer_set_operations
 
directory  sample_around
 

Files

file  CalcInterNeighborGroup.cc
 This is meant for finding interfaces between protein domains - like protein-protein interfaces but within a protein. It's more flexible than that, though. You define groups of residues within a protein (say, the N and C terminal domains). You then define which pairs of groups you are interested in. This calculator returns the union of the sets of residues at the interfaces between these domains/groups. This calculator contains a superset of the functionality of some of the other calculators, but is less efficient in simple cases. The pose does NOT have to have been scored.
 
file  CalcInterNeighborGroup.fwd.hh
 
file  CalcInterNeighborGroup.hh
 This calculator is meant for finding interfaces between protein domains - like protein-protein interfaces but within a protein. It's more flexible than that, though. You define groups of residues within a protein (say, the N and C terminal domains). You then define which pairs of groups you are interested in. This calculator returns the union of the sets of residues at the interfaces between these domains/groups. This calculator contains a superset of the functionality of some of the other calculators, but is less efficient in simple cases. The pose does NOT have to have been scored.
 
file  Cluster.cc
 
file  Cluster.hh
 
file  Cluster.impl.hh
 template implementation for clustering of silentstructs that are provided by iterators
 
file  DecoySetEvaluation.cc
 
file  DecoySetEvaluation.fwd.hh
 
file  DecoySetEvaluation.hh
 
file  DecoySetEvaluation.impl.hh
 
file  EnergyLandscapeEvaluator.cc
 Evaluates a set of score/rms points.
 
file  EnergyLandscapeEvaluator.fwd.hh
 Evaluates a set of score/rms points.
 
file  EnergyLandscapeEvaluator.hh
 Evaluates a set of score/rms points.
 
file  IGEdgeReweighters.cc
 
file  IGEdgeReweighters.hh
 
file  InteratomicVarianceMatrix.cc
 
file  InteratomicVarianceMatrix.hh
 
file  KCluster.cc
 
file  KCluster.fwd.hh
 
file  KCluster.hh
 Fast clustering algorithm for large silent file.
 
file  NetworkAlgorithms.cc
 calculate various network properties from poses
 
file  NetworkAlgorithms.fwd.hh
 FOrward header for class that analyzes properties of residue networks.
 
file  NetworkAlgorithms.hh
 Computes network properties of a pose.
 
file  PyReturnValuePolicyTest.cc
 
file  PyReturnValuePolicyTest.hh
 A few functions test how PyRosetta handle boost ReturnValuePolicy.
 
file  SamplerPlusPlus.fwd.hh
 Abstract Base Class for Sampler generator.
 
file  SamplerPlusPlus.hh
 Abstract Base Class for Sampler generator.
 
file  SamplerPlusPlusType.hh
 
file  superimpose.cc
 
file  superimpose.hh