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constraints Directory Reference
Directory dependency graph for constraints:
src/core/scoring/constraints

Files

file  AmbiguousConstraint.cc
 contains declarations for a type of constraint that holds a number of constraints
 
file  AmbiguousConstraint.fwd.hh
 
file  AmbiguousConstraint.hh
 contains declarations for a type of constraint that holds multiple other
 
file  AmbiguousNMRConstraint.cc
 contains declarations for a type of constraint that holds a number of constraints
 
file  AmbiguousNMRConstraint.fwd.hh
 
file  AmbiguousNMRConstraint.hh
 contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
 
file  AmbiguousNMRDistanceConstraint.cc
 
file  AmbiguousNMRDistanceConstraint.fwd.hh
 
file  AmbiguousNMRDistanceConstraint.hh
 
file  AngleConstraint.cc
 Definition of AngularConstraints.
 
file  AngleConstraint.fwd.hh
 
file  AngleConstraint.hh
 
file  AtomPairConstraint.cc
 
file  AtomPairConstraint.fwd.hh
 
file  AtomPairConstraint.hh
 
file  BackboneStubConstraint.cc
 
file  BackboneStubConstraint.fwd.hh
 
file  BackboneStubConstraint.hh
 
file  BackboneStubLinearConstraint.cc
 
file  BackboneStubLinearConstraint.fwd.hh
 
file  BackboneStubLinearConstraint.hh
 
file  BasePairConstraint.cc
 A wrapper for a very particular AmbiguousConstraint of MultiConstraints.
 
file  BasePairConstraint.fwd.hh
 A wrapper for a very particular AmbiguousConstraint of MultiConstraints.
 
file  BasePairConstraint.hh
 A wrapper for a very particular AmbiguousConstraint of MultiConstraints.
 
file  BasicConstraintCreators.cc
 
file  BasicConstraintCreators.hh
 
file  BigBinConstraint.cc
 
file  BigBinConstraint.hh
 
file  BoundConstraint.cc
 
file  BoundConstraint.fwd.hh
 
file  BoundConstraint.hh
 
file  ConstantConstraint.cc
 
file  ConstantConstraint.fwd.hh
 
file  ConstantConstraint.hh
 
file  Constraint.cc
 
file  Constraint.fwd.hh
 
file  Constraint.hh
 Base class definition for Constraint class hierarchy.
 
file  ConstraintCreator.cc
 
file  ConstraintCreator.fwd.hh
 
file  ConstraintCreator.hh
 Base class for ConstraintCreators for the Constraint load-time factory registration scheme.
 
file  ConstraintEnergyContainer.cc
 
file  ConstraintEnergyContainer.fwd.hh
 
file  ConstraintEnergyContainer.hh
 
file  ConstraintFactory.cc
 Factory for creating various types of constraints.
 
file  ConstraintFactory.hh
 Factory for creating various types of constraints.
 
file  ConstraintGraph.cc
 
file  ConstraintGraph.fwd.hh
 Constraints Energy Graph class forward declaration.
 
file  ConstraintGraph.hh
 
file  ConstraintIO.cc
 
file  ConstraintIO.hh
 
file  Constraints.cc
 
file  Constraints.fwd.hh
 
file  Constraints.hh
 
file  ConstraintsEnergy.cc
 
file  ConstraintsEnergy.fwd.hh
 Constraints Energy Method forward declaration.
 
file  ConstraintsEnergy.hh
 Constraints Energy Method declaration.
 
file  ConstraintsEnergyCreator.hh
 Declaration for the class that connects ConstraintsEnergy with the ScoringManager.
 
file  ConstraintSet.cc
 
file  ConstraintSet.fwd.hh
 
file  ConstraintSet.hh
 
file  CoordinateConstraint.cc
 
file  CoordinateConstraint.hh
 
file  CstMinimizationData.cc
 A cacheable data wrapper for ConstraintsOPs for use in minimization.
 
file  CstMinimizationData.hh
 A cacheable data wrapper for ConstraintsOPs for use in minimization.
 
file  DihedralConstraint.cc
 
file  DihedralConstraint.fwd.hh
 
file  DihedralConstraint.hh
 
file  DihedralPairConstraint.cc
 
file  DihedralPairConstraint.hh
 
file  DistancePairConstraint.cc
 
file  DistancePairConstraint.hh
 
file  DOF_Constraint.cc
 
file  DOF_Constraint.fwd.hh
 
file  DOF_Constraint.hh
 
file  FabConstraint.cc
 This class is specific to antibodies and penalizes presence of non-cdr residues.
 
file  FabConstraint.fwd.hh
 This class is specific to antibodies and penalizes presence of residues flanking.
 
file  FabConstraint.hh
 This class is specific to antibodies and penalizes presence of residues flanking antibody cdr residues at Antigen-Antibody interfaces (ported from Fab constraint in rosetta++ which uses a constant constraint score of 0.5/flanking residue)
 
file  KofNConstraint.cc
 meta constraint where N constraints declared
 
file  KofNConstraint.fwd.hh
 meta constraint where N constraints declared
 
file  KofNConstraint.hh
 meta constraint where N constraints declared
 
file  LocalCoordinateConstraint.cc
 
file  LocalCoordinateConstraint.hh
 
file  MembraneSpanConstraint.cc
 constarint the TM spans specified by user to stay in the membrane
 
file  MembraneSpanConstraint.fwd.hh
 
file  MembraneSpanConstraint.hh
 
file  MembraneSpanTermZConstraint.cc
 constraint the Z axis distance between TM span edges
 
file  MembraneSpanTermZConstraint.fwd.hh
 
file  MembraneSpanTermZConstraint.hh
 
file  MultiConstraint.cc
 contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
 
file  MultiConstraint.fwd.hh
 
file  MultiConstraint.hh
 contains declarations for a type of constraint that holds multiple other constrains that belong to each other and are all evaluate at once
 
file  NamedAngleConstraint.cc
 Provides an angle constraint based on atom names, rather than numbers. Useful for when atom numbers change.
 
file  NamedAngleConstraint.fwd.hh
 Provides an angle constraint based on atom names, rather than numbers. Useful for when atom numbers change.
 
file  NamedAngleConstraint.hh
 
file  NamedAtomPairConstraint.cc
 
file  NamedAtomPairConstraint.fwd.hh
 
file  NamedAtomPairConstraint.hh
 
file  NamedDihedralConstraint.cc
 Provides a dihedral constraint based on atom names, rather than numbers. Useful for when atom numbers change.
 
file  NamedDihedralConstraint.fwd.hh
 Provides a dihedral constraint based on atom names, rather than numbers. Useful for when atom numbers change.
 
file  NamedDihedralConstraint.hh
 
file  NonResidueTypeConstraint.cc
 
file  NonResidueTypeConstraint.fwd.hh
 
file  NonResidueTypeConstraint.hh
 
file  ResidueCouplingConstraint.cc
 
file  ResidueCouplingConstraint.fwd.hh
 constrainting two residues to be the same type, based on
 
file  ResidueCouplingConstraint.hh
 
file  ResidueTypeConstraint.cc
 
file  ResidueTypeConstraint.fwd.hh
 
file  ResidueTypeConstraint.hh
 
file  ResidueTypeLinkingConstraint.cc
 Implements linked constraints, where bonuses or penalties can be applied if pairs of residues match specific sequences.
 
file  ResidueTypeLinkingConstraint.fwd.hh
 constrainting two residues to be the same type, based on
 
file  ResidueTypeLinkingConstraint.hh
 Implements linked constraints, where bonuses or penalties can be applied if pairs of residues match specific sequences.
 
file  RTConstraint.cc
 
file  RTConstraint.fwd.hh
 
file  RTConstraint.hh
 Constraint definition for RT of stub pairs.
 
file  SequenceProfileConstraint.cc
 This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design). A note about the SequenceProfile::read_from_checkpoint function that is used to read in scores for amino acid types: the first line of the file will be ignored.
 
file  SequenceProfileConstraint.fwd.hh
 
file  SequenceProfileConstraint.hh
 This is a constraint that refers to a core::sequence::SequenceProfile? in order to influence the scoring of amino acid types based on multiple sequence alignments (i.e. for biasing amino acid choices during design).
 
file  SequenceProfileConstraintCreator.hh
 
file  SiteConstraint.cc
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraint.fwd.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraint.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraintResidues.cc
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraintResidues.fwd.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  SiteConstraintResidues.hh
 This class is an AmbiguousConstraint in which the set is comprised of AtomPairConstraints.
 
file  util.cc
 utility functions for defining and using constraints.
 
file  util.hh
 Utility functions for defining and using constraints.