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protocols Directory Reference
Directory dependency graph for protocols:
src/protocols

Directories

directory  aa_composition
 
directory  abinitio
 
directory  analysis
 
directory  anchored_design
 
directory  antibody
 
directory  antibody_legacy
 
directory  backbone_moves
 
directory  backrub
 
directory  boinc
 
directory  branch_angle
 
directory  calc_taskop_filters
 
directory  calc_taskop_movers
 
directory  canonical_sampling
 
directory  carbohydrates
 
directory  cartesian
 
directory  checkpoint
 
directory  chemically_conjugated_docking
 
directory  cluster
 
directory  comparative_modeling
 
directory  constel
 
directory  constraint_filters
 
directory  constraint_generator
 
directory  constraint_movers
 
directory  constraints_additional
 
directory  contact_map
 
directory  coupled_moves
 
directory  cryst
 
directory  cutoutdomain
 
directory  cyclic_peptide
 
directory  cyclic_peptide_predict
 
directory  ddg
 
directory  denovo_design
 
directory  design_opt
 
directory  dna
 
directory  dna_dock
 
directory  docking
 
directory  domain_assembly
 
directory  drug_design
 
directory  electron_density
 
directory  energy_based_clustering
 
directory  environment
 
directory  enzdes
 
directory  enzymatic_movers
 
directory  evaluation
 
directory  evolution
 
directory  farnesyl
 
directory  features
 
directory  fibril
 
directory  filters
 
directory  fldsgn
 
directory  flexpack
 
directory  flexpep_docking
 
directory  floppy_tail
 
directory  flxbb
 
directory  fold_from_loops
 
directory  forge
 
directory  frag_picker
 
directory  frags
 
directory  generalized_kinematic_closure
 
directory  genetic_algorithm
 
directory  grafting
 
directory  hbnet
 
directory  helical_bundle
 
directory  helical_bundle_predict
 
directory  helix_capper
 
directory  hotspot_hashing
 
directory  hybridization
 
directory  hydrate
 
directory  idealize
 
directory  indel
 
directory  indexed_structure_store
 
directory  init
 
directory  interface
 
directory  jd2
 
directory  jd3
 
directory  jobdist
 
directory  jumping
 
directory  kinematic_closure
 
directory  kinmatch
 
directory  legacy_sewing
 
directory  ligand_docking
 
directory  loop_build
 
directory  loop_grower
 
directory  loop_modeler
 
directory  loop_modeling
 
directory  loophash
 
directory  loops
 
directory  magnesium
 
directory  mainchain_potential
 
directory  make_rot_lib
 
directory  match
 
directory  matdes
 
directory  md
 
directory  mean_field
 
directory  medal
 
directory  membrane
 
directory  membrane_benchmark
 
directory  metal_interface
 
directory  minimization_packing
 
directory  monte_carlo
 
directory  motif_grafting
 
directory  motifs
 
directory  moves
 
directory  mpi_refinement
 
directory  multistage_rosetta_scripts
 
directory  multistate_design
 
directory  ncbb
 
directory  neighbor
 
directory  network
 
directory  nmr
 
directory  noesy_assign
 
directory  nonlocal
 
directory  normalmode
 
directory  optimize_weights
 
directory  pack_daemon
 
directory  pack_interface
 
directory  parser
 
directory  pb_potential
 
directory  pdbinfo_manipulations
 
directory  peptide_deriver
 
directory  pmut_scan
 
directory  pockets
 
directory  pose_creation
 
directory  pose_length_moves
 
directory  pose_metric_calculators
 
directory  pose_reporters
 
directory  pose_selectors
 
directory  protein_interface_design
 
directory  qsar
 
directory  quantum_annealing
 
directory  rbsegment_relax
 
directory  recces
 
directory  recon_design
 
directory  relax
 
directory  residue_optimization
 
directory  residue_selectors
 
directory  rigid
 
directory  rna
 
directory  rosetta_scripts
 
directory  rotamer_recovery
 
directory  RotamerDump
 
directory  rpc
 
directory  sasa_scores
 
directory  score_filters
 
directory  scoring
 
directory  seeded_abinitio
 
directory  sewing
 
directory  sic_dock
 
directory  simple_ddg
 
directory  simple_filters
 
directory  simple_moves
 
directory  simple_pose_metric_calculators
 
directory  simple_task_operations
 
directory  sparta
 
directory  splice
 
directory  ss_prediction
 
directory  star
 
directory  stepwise
 
directory  struct_fragment
 
directory  surface_docking
 
directory  switches
 
directory  symmetric_docking
 
directory  symmetry
 
directory  task_operations
 
directory  tcr
 
directory  testing
 
directory  toolbox
 
directory  topology_broker
 
directory  trajectory
 
directory  unfolded_state_energy_calculator
 
directory  vardist_solaccess
 
directory  viewer
 
directory  vip
 
directory  wum