Rosetta  2020.50
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simple_moves Directory Reference
Directory dependency graph for simple_moves:
src/protocols/simple_moves

Directories

directory  asym_fold_and_dock
 
directory  bb_sampler
 
directory  bin_transitions
 
directory  chiral
 
directory  rational_mc
 
directory  sidechain_moves
 

Files

file  AddCavitiesMover.cc
 
file  AddCavitiesMover.hh
 
file  AddChainMover.cc
 
file  AddChainMover.fwd.hh
 Add chain to an existing pose (as a new chain)
 
file  AddChainMover.hh
 switch the chain order
 
file  AddChainMoverCreator.hh
 
file  AddJobPairData.cc
 A really simple mover that takes some data in through xml and appends it to the pose.
 
file  AddJobPairData.fwd.hh
 Forward Header file for the AddJobPairData Mover.
 
file  AddJobPairData.hh
 Header file for the AddJobPairData Mover.
 
file  AddJobPairDataCreator.hh
 MoverCreator definitions for the AddJobPairData mover.
 
file  AddPDBInfoMover.cc
 
file  AddPDBInfoMover.fwd.hh
 Forward header file for AddPDBInfoMover.
 
file  AddPDBInfoMover.hh
 
file  AddPDBInfoMoverCreator.hh
 
file  AddResidueCouplingConstraint.cc
 
file  AddResidueCouplingConstraint.fwd.hh
 
file  AddResidueCouplingConstraint.hh
 
file  AddResidueCouplingConstraintCreator.hh
 
file  AddResidueLabelMover.cc
 
file  AddResidueLabelMover.fwd.hh
 
file  AddResidueLabelMover.hh
 
file  AddResidueLabelMoverCreator.hh
 This class will create instances of AddResidueLabelMover for the MoverFactory.
 
file  AddSapConstraintMover.cc
 Mover that adds the SapConstraint to the pose.
 
file  AddSapConstraintMover.fwd.hh
 Mover that adds the SapConstraint to the pose.
 
file  AddSapConstraintMover.hh
 Mover that adds the SapConstraint to the pose.
 
file  AddSapConstraintMoverCreator.hh
 Mover that adds RotamerPSSMConstraint to pose.
 
file  AddSapMathConstraintMover.cc
 Mover that adds the SapMathConstraint to the pose.
 
file  AddSapMathConstraintMover.fwd.hh
 Mover that adds the SapMathConstraint to the pose.
 
file  AddSapMathConstraintMover.hh
 Mover that adds the SapMathConstraint to the pose.
 
file  AddSapMathConstraintMoverCreator.hh
 Mover that adds SapMathConstraint to pose.
 
file  AlignChainMover.cc
 
file  AlignChainMover.fwd.hh
 
file  AlignChainMover.hh
 switch the chain order
 
file  AlignChainMoverCreator.hh
 
file  BackboneMover.cc
 Method definitions for SmallMover and ShearMover.
 
file  BackboneMover.fwd.hh
 BackboneMover forward declarations header.
 
file  BackboneMover.hh
 Declarations and simple accessor/mutator definitions for SmallMover and ShearMover.
 
file  BackboneMoverCreator.hh
 This class will create instances of protocols::moves::Movers SmallMover and ShearMover for the protocols::moves::MoverFactory.
 
file  BBConRotMover.cc
 
file  BBConRotMover.fwd.hh
 
file  BBConRotMover.hh
 
file  BBDihedralSamplerMover.cc
 
file  BBDihedralSamplerMover.fwd.hh
 Mover interface to BBDihedralSampler.
 
file  BBDihedralSamplerMover.hh
 Mover interface to BBDihedralSampler.
 
file  BBDihedralSamplerMoverCreator.hh
 Mover interface to BBDihedralSampler.
 
file  BBGaussianMover.cc
 
file  BBGaussianMover.fwd.hh
 Gaussian Perturbation to backbone.
 
file  BBGaussianMover.hh
 
file  BBGaussianMoverCreator.hh
 
file  ChainSplitMover.cc
 
file  ChainSplitMover.fwd.hh
 Forward declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
 
file  ChainSplitMover.hh
 Declaration of ChainSplitMover which splits a pose into two chains at a given cutpoint.
 
file  ChangeAndResetFoldTreeMover.cc
 
file  ChangeAndResetFoldTreeMover.fwd.hh
 
file  ChangeAndResetFoldTreeMover.hh
 Basic Mover used for setting up atomic protocols.
 
file  ChangeAndResetFoldTreeMoverCreator.hh
 
file  CombinePoseMover.cc
 
file  CombinePoseMover.fwd.hh
 
file  CombinePoseMover.hh
 
file  ConcatenatePosesMover.cc
 links supplied Poses by their termini
 
file  ConcatenatePosesMover.fwd.hh
 links supplied Poses by their termini
 
file  ConcatenatePosesMover.hh
 links supplied Poses by their termini
 
file  ConcatenatePosesMoverCreator.hh
 links supplied Poses by their termini
 
file  ConstrainToIdealMover.cc
 Adds to your pose constraints suitable for idealization of bond lengths and angles.
 
file  ConstrainToIdealMover.fwd.hh
 ConstrainToIdealMover forward declarations header.
 
file  ConstrainToIdealMover.hh
 Adds to your pose constraints suitable for idealization of bond lengths and angles.
 
file  ContingentAcceptMover.cc
 
file  ContingentAcceptMover.fwd.hh
 switch the chain order
 
file  ContingentAcceptMover.hh
 switch the chain order
 
file  ContingentAcceptMoverCreator.hh
 
file  ConvertRealToVirtualMover.cc
 Mover for switching a residue type to all virtual.
 
file  ConvertRealToVirtualMover.fwd.hh
 Mover for switching a residue type to all virtual.
 
file  ConvertRealToVirtualMover.hh
 Mover for switching a residue type to all virtual.
 
file  ConvertRealToVirtualMoverCreator.hh
 Mover for switching a residue type to all virtual.
 
file  ConvertVirtualToRealMover.cc
 Mover for switching virtual residues back to real residues.
 
file  ConvertVirtualToRealMover.fwd.hh
 Mover for switching virtual residues back to real residues.
 
file  ConvertVirtualToRealMover.hh
 Mover for switching virtual residues back to real residues.
 
file  ConvertVirtualToRealMoverCreator.hh
 
file  CopyDofMover.cc
 
file  CopyDofMover.fwd.hh
 
file  CopyDofMover.hh
 
file  CopyRotamerMover.cc
 A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
 
file  CopyRotamerMover.fwd.hh
 A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
 
file  CopyRotamerMover.hh
 A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
 
file  CopyRotamerMoverCreator.hh
 A mover to copy a rotamer (residue identity and conformation) from one position in a pose to another.
 
file  CoupledMover.cc
 implementation of CoupledMover class and functions
 
file  CoupledMover.fwd.hh
 
file  CoupledMover.hh
 definition of CoupledMover class and functions
 
file  CoupledMoverCreator.hh
 This class will create instances of protocols::moves::Mover CoupledMover for the protocols::moves::MoverFactory.
 
file  CutChainMover.cc
 
file  CutChainMover.fwd.hh
 
file  CutChainMover.hh
 
file  CutChainMoverCreator.hh
 
file  CyclizationMover.cc
 
file  CyclizationMover.fwd.hh
 
file  CyclizationMover.hh
 Implimentation file for CyclizationMover.
 
file  DeleteChainMover.cc
 
file  DeleteChainMover.fwd.hh
 Add chain to an existing pose (as a new chain)
 
file  DeleteChainMover.hh
 Delete the chain specified by chain number.
 
file  DeleteChainMoverCreator.hh
 
file  DeleteChainsMover.cc
 
file  DeleteChainsMover.fwd.hh
 Forward declations for DeleteChainsMover.
 
file  DeleteChainsMover.hh
 Delete a chain from a pose.
 
file  DeleteChainsMoverCreator.hh
 Declaration of the protocols::moves::MoverCreator class for the DeleteChainsMover.
 
file  DisulfideInsertionMover.cc
 a mover that closes a receptor bound peptide by an added disulfide bond
 
file  DisulfideInsertionMover.fwd.hh
 Forward header file for DisulfideInsertionMover.
 
file  DisulfideInsertionMover.hh
 Header file for DisulfideInsertionMover.
 
file  DisulfideInsertionMoverCreator.cc
 Creator class for DisulfideInsertionMover.
 
file  DisulfideInsertionMoverCreator.fwd.hh
 Creator class for DisulfideInsertionMover.
 
file  DisulfideInsertionMoverCreator.hh
 Creator class for DisulfideInsertionMover.
 
file  DME_FilterMover.cc
 
file  DME_FilterMover.hh
 
file  DOFHistogramRecorder.cc
 
file  DOFHistogramRecorder.fwd.hh
 Forward declarations for class DOFHistogramRecorder.
 
file  DOFHistogramRecorder.hh
 
file  DumpPdb.cc
 
file  DumpPdb.fwd.hh
 Forward header file for DumpPdb.
 
file  DumpPdb.hh
 
file  DumpPdbCreator.hh
 
file  DumpSingleResidueRotamers.cc
 Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
 
file  DumpSingleResidueRotamers.fwd.hh
 Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
 
file  DumpSingleResidueRotamers.hh
 Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
 
file  DumpSingleResidueRotamersCreator.hh
 Given a residue index, dump all of the rotamers to individual PDB files within 0-1 sd of the mean.
 
file  ExplicitWaterMover.cc
 add explicit water molecules to surface of biomolecule
 
file  ExplicitWaterMover.fwd.hh
 
file  ExplicitWaterMover.hh
 
file  ExplicitWaterMoverCreator.hh
 
file  FavorSequenceProfile.cc
 Add a SequenceProfileConstraint to a pose.
 
file  FavorSequenceProfile.hh
 Add a SequenceProfileConstraint to a pose.
 
file  FavorSequenceProfileCreator.hh
 Declaration of the protocols::moves::MoverCreator class for the FavorSequenceProfile.
 
file  FavorSymmetricSequence.cc
 apply constraints to enforce a symmetric sequence
 
file  FavorSymmetricSequence.fwd.hh
 apply constraints to enforce a symmetric sequence
 
file  FavorSymmetricSequence.hh
 apply constraints to enforce a symmetric sequence
 
file  FavorSymmetricSequenceCreator.hh
 apply constraints to enforce a symmetric sequence
 
file  FoldTreeFromMotif.cc
 
file  FoldTreeFromMotif.fwd.hh
 FoldTreeFromMotif forward declarations header.
 
file  FoldTreeFromMotif.hh
 
file  FoldTreeFromMotifCreator.hh
 
file  FragmentMover.cc
 
file  FragmentMover.fwd.hh
 
file  FragmentMover.hh
 
file  GunnCost.cc
 
file  GunnCost.hh
 
file  LoadUnboundRotMover.cc
 LoadUnboundRotMover methods implemented.
 
file  LoadUnboundRotMover.fwd.hh
 
file  LoadUnboundRotMover.hh
 
file  LoadUnboundRotMoverCreator.hh
 
file  MembraneTopology.cc
 
file  MembraneTopology.fwd.hh
 
file  MembraneTopology.hh
 
file  MembraneTopologyCreator.hh
 
file  MissingDensityToJumpMover.cc
 Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
 
file  MissingDensityToJumpMover.fwd.hh
 Implementation of mover that inserts a jump where there is gap in the pdb. This gap corresponds to missing density.
 
file  MissingDensityToJumpMover.hh
 
file  ModifyVariantTypeMover.cc
 Modify variant type to residues.
 
file  ModifyVariantTypeMover.fwd.hh
 
file  ModifyVariantTypeMover.hh
 
file  ModifyVariantTypeMoverCreator.hh
 
file  MutateResidue.cc
 
file  MutateResidue.fwd.hh
 
file  MutateResidue.hh
 
file  MutateResidueCreator.hh
 
file  PDBReloadMover.cc
 
file  PDBReloadMover.fwd.hh
 PDBReloadMover forward declarations header.
 
file  PDBReloadMover.hh
 
file  PDBReloadMoverCreator.hh
 
file  PeriodicBoxMover.cc
 Mover for running liquid simulation (or related other)
 
file  PeriodicBoxMover.fwd.hh
 
file  PeriodicBoxMover.hh
 Mover for running liquid simulation (and related others)
 
file  PeriodicBoxMoverCreator.hh
 
file  PoseFromPoseResourceMover.cc
 Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
 
file  PoseFromPoseResourceMover.fwd.hh
 Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
 
file  PoseFromPoseResourceMover.hh
 Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
 
file  PoseFromPoseResourceMoverCreator.hh
 Mover that shuttles a Pose from a PoseResource into the DataMap when its parse_my_tag method is invoked.
 
file  ProlineFixMover.cc
 
file  ProlineFixMover.fwd.hh
 
file  ProlineFixMover.hh
 
file  PSSM2BfactorMover.cc
 
file  PSSM2BfactorMover.fwd.hh
 switch the chain order
 
file  PSSM2BfactorMover.hh
 
file  PSSM2BfactorMoverCreator.hh
 
file  RandomOmegaFlipMover.cc
 
file  RandomOmegaFlipMover.fwd.hh
 
file  RandomOmegaFlipMover.hh
 
file  RandomOmegaFlipMoverCreator.hh
 This class will create instances of RandomOmegaFlipMover for the MoverFactory.
 
file  RandomTorsionMover.cc
 
file  RandomTorsionMover.fwd.hh
 
file  RandomTorsionMover.hh
 
file  RandomTorsionMoverCreator.hh
 This class will create instances of RandomTorsionMover for the MoverFactory.
 
file  ReportEffectivePKA.cc
 
file  ReportEffectivePKA.hh
 
file  ReportEffectivePKACreator.hh
 This class will create instances of Mover ReportEffectivePKA for the MoverFactory.
 
file  ReportXYZ.cc
 
file  ReportXYZ.fwd.hh
 
file  ReportXYZ.hh
 adds the x,y,z of a selected residue to the score function
 
file  ReportXYZCreator.hh
 
file  RepulsiveOnlyMover.cc
 calculate repulsive energy only for certain residues
 
file  RepulsiveOnlyMover.fwd.hh
 
file  RepulsiveOnlyMover.hh
 
file  ResetFoldTree.cc
 
file  ResetFoldTree.fwd.hh
 eliminates the fold tree
 
file  ResetFoldTree.hh
 wipes out a fold tree making the first residue 0 and the last residue the length of the protein
 
file  ResetFoldTreeCreator.hh
 
file  ResetFullModelInfoMover.cc
 Ensure synchronized full model info.
 
file  ResetFullModelInfoMover.fwd.hh
 Ensure synchronized full model info.
 
file  ResetFullModelInfoMover.hh
 Ensure synchronized full model info.
 
file  ResetFullModelInfoMoverCreator.hh
 Ensure synchronized full model info.
 
file  ResTypeFragmentMover.cc
 
file  ResTypeFragmentMover.fwd.hh
 
file  ResTypeFragmentMover.hh
 
file  ReturnSidechainMover.cc
 ReturnSidechainMover methods implemented.
 
file  ReturnSidechainMover.fwd.hh
 ReturnSidechainMover forward declarations header.
 
file  ReturnSidechainMover.hh
 protocols::moves::Mover to "return" proper sidechains to a pose that was temporarily in centroid mode (can be used for any sidechain copying)
 
file  RingConformationMover.cc
 Method definitions for RingConformationMover.
 
file  RingConformationMover.fwd.hh
 Forward declarations for RingConformationMover.
 
file  RingConformationMover.hh
 Declarations and simple accessor/mutator definitions for RingConformationMover.
 
file  RingConformationMoverCreator.hh
 Method declarations for RingConformationMoverCreator.
 
file  SaveSequenceToCommentsMover.cc
 Remove constraints from the current pose conformation.
 
file  SaveSequenceToCommentsMover.fwd.hh
 
file  SaveSequenceToCommentsMover.hh
 Add constraints to the current pose conformation.
 
file  SaveSequenceToCommentsMoverCreator.hh
 Declaration of the MoverCreator class for the SaveSequenceToCommentsMover.
 
file  ScoreMover.cc
 Applies a ScoreFunction to a Pose. Also has CASP and loop modeling features.
 
file  ScoreMover.fwd.hh
 ScoreMover forward declarations header.
 
file  ScoreMover.hh
 
file  ScoreMoverCreator.hh
 
file  SequenceProfileMover.cc
 moverization of code that was embedded in the parser
 
file  SequenceProfileMover.fwd.hh
 
file  SequenceProfileMover.hh
 BS mover to get around a stupid "mover" that was embedded in the parser.
 
file  SequenceProfileMoverCreator.hh
 
file  SetTorsion.cc
 
file  SetTorsion.fwd.hh
 
file  SetTorsion.hh
 Sets the value of a desired torsion. Header files for the mover.
 
file  SetTorsionCreator.hh
 
file  SetupMetalsMover.cc
 
file  SetupMetalsMover.fwd.hh
 SetupMetalsMover forward declarations header.
 
file  SetupMetalsMover.hh
 class definition for SetupMetalsMover
 
file  SetupMetalsMoverCreator.hh
 
file  ShakeStructureMover.cc
 
file  ShakeStructureMover.fwd.hh
 
file  ShakeStructureMover.hh
 
file  ShortBackrubMover.cc
 implementation of ShortBackrubMover class and functions
 
file  ShortBackrubMover.fwd.hh
 
file  ShortBackrubMover.hh
 definition of ShortBackrubMover class and functions
 
file  ShortBackrubMoverCreator.hh
 This class will create instances of protocols::moves::Mover ShortBackrubMover for the protocols::moves::MoverFactory.
 
file  SimpleThreadingMover.cc
 Very Simple class for threading a regional sequence onto a structure.
 
file  SimpleThreadingMover.fwd.hh
 
file  SimpleThreadingMover.hh
 
file  SimpleThreadingMoverCreator.hh
 
file  SmoothFragmentMover.cc
 
file  SmoothFragmentMover.fwd.hh
 
file  SmoothFragmentMover.hh
 
file  StorePoseSnapshot.cc
 Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state.
 
file  StorePoseSnapshot.fwd.hh
 Owning pointers and whatnot for the StorePoseSnapshot mover class.
 
file  StorePoseSnapshot.hh
 Stores current residue indices in the pose as a ReferencePose. As residues are added or subtracted, this permits the user to set up movers based on the current residue indices rather than the modified indices of a future state. Header files for the mover.
 
file  StorePoseSnapshotCreator.hh
 This class will create instances of the protocols::simple_moves::StorePoseSnapshot mover for the protocols::moves::MoverFactory.
 
file  StructProfileMover.cc
 
file  StructProfileMover.fwd.hh
 Quickly generates a structure profile.
 
file  StructProfileMover.hh
 Quickly generates a structure profile.
 
file  StructProfileMoverCreator.hh
 
file  SuperimposeMover.cc
 
file  SuperimposeMover.fwd.hh
 SuperimposeMover forward declarations header.
 
file  SuperimposeMover.hh
 
file  SuperimposeMoverCreator.hh
 
file  SwitchChainOrderMover.cc
 
file  SwitchChainOrderMover.fwd.hh
 switch the chain order
 
file  SwitchChainOrderMover.hh
 switch the chain order
 
file  SwitchChainOrderMoverCreator.hh
 
file  SwitchResidueTypeSetMover.cc
 switch between residue type sets (e.g. centroid and all atom)
 
file  SwitchResidueTypeSetMover.fwd.hh
 switch between residue type sets (e.g. centroid and all atom)
 
file  SwitchResidueTypeSetMover.hh
 switch between residue type sets (e.g. centroid and all atom)
 
file  SwitchResidueTypeSetMoverCreator.hh
 
file  SymmetricFragmentMover.cc
 
file  SymmetricFragmentMover.fwd.hh
 
file  SymmetricFragmentMover.hh
 
file  TailsScoreMover.cc
 
file  TailsScoreMover.hh
 
file  TorsionDOFMover.cc
 TorsionDOFMover methods implemented.
 
file  TorsionDOFMover.fwd.hh
 TorsionDOFMover forward declarations header.
 
file  TorsionDOFMover.hh
 TorsionDOFMover header.
 
file  TorsionSetMover.cc
 
file  TorsionSetMover.fwd.hh
 
file  TorsionSetMover.hh
 
file  Tumble.cc
 Add constraints to the current pose conformation.
 
file  Tumble.hh
 Declaration of the MoverCreator class for the Tumble.
 
file  TumbleCreator.hh
 
file  UniformPositionMover.cc
 
file  UniformPositionMover.fwd.hh
 Apply a uniform (deterministic move) to a given position.
 
file  UniformPositionMover.hh
 Apply a uniform (deterministic move) to a given position.
 
file  VirtualRootMover.cc
 Manipulate virtual roots on poses. This is a seperate mover mainly to be RosettaScriptable.
 
file  VirtualRootMover.fwd.hh
 VirtualRootMover forward declarations header.
 
file  VirtualRootMover.hh
 Manipulate virtual roots on poses.
 
file  VirtualRootMoverCreator.hh
 
file  WobbleMover.cc
 
file  WobbleMover.hh
 
file  WriteFiltersToPose.cc
 Writes all filter results to the pose file.
 
file  WriteFiltersToPose.fwd.hh
 
file  WriteFiltersToPose.hh
 Writes all filter results to the pose file.
 
file  WriteFiltersToPoseCreator.hh
 This class will create instances of Mover WriteFiltersToPose for the MoverFactory.
 
file  WriteSSEMover.cc
 Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
 
file  WriteSSEMover.fwd.hh
 Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
 
file  WriteSSEMover.hh
 Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.
 
file  WriteSSEMoverCreator.hh
 Writes SSE assignation from DSSP or prediction from PSIPRED as REMARK.