I'm trying to learn how to use Rosetta in de novo protein design. I use this article as a manual: https://www.ncbi.nlm.nih.gov/pubmed/23744289
It doesn't work for me at some point. Namely, when I go to step 13 (Running the comparative modeling job), I try to execute the following command in the terminal:
./loopmodel.default.linuxgccrelease @modeling.options -database rosetta_database -nstruct 100
But the response is:
ERROR: ERROR: Option matching -loops:fa_input not found in command line top-level context
It seems rather strange, because Rosetta modeling option contains the description of this parameter: https://www.rosettacommons.org/manuals/rosetta3.1_user_guide/opt_loops.html
My rosetta version is rosetta_bin_linux_2017.08.59291_bundle
I performed search of this error on the forum but didn't find anything.
Thank you in advance!