Where can I found the dictory of all functions of Pyrosetta, including its definition and usage?
Thanks a lot
The documentation for PyRosetta functionality is sparse, at best, but what documentation there is for the API can be found at http://www.pyrosetta.org/documentation -- particularly the link to http://graylab.jhu.edu/PyRosetta.documentation/
Alternatively, most of the PyRosetta functionality is just a thin wrapper around the Rosetta functionality. Much of the information in the Rosetta documentation (both the user guide at https://www.rosettacommons.org/docs/latest/Home and the code documentation at https://www.rosettacommons.org/manuals/latest/ -- much of the PyRosetta documentation is just a differently formatted version of the latter.)
... and if you're confused about anything, feel free to ask. We realize that the documentation is rather scant, and not necessarily as helpful as it could be.
Thanks a lot for your reply.