So I'm trying to load this ligand_protein complex PDB into PyRosetta by temporarily creating a ResidueTypeSet
from pyrosetta import *
params_path = Vector1(['cefotaxime.params', 'cefotaxime.params'])
nonstandard_residue_type = generate_nonstandard_residue_set(params_path)
I got this error message:
generate_nonstandard_residue_set() takes exactly 2 arguments (1given)
I'm using this temporary method becuase I followed this procedure step by step to try to permanently modify the chemical database:
I made sure that I BOTH placd the new cefotaxime.params file into the correct directory but also added the path to the cefotaxime.params file to the residue_types.txt file.
But when I loaded the PDB file a pose, pyrosetta still did not recognize the cef (cefotaxime) residue type.
Any help tp solve either issue is really appreciated !!