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Protein protein docking

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Protein protein docking


I am performing a local docking using Rosie server for a complex obtained from patchdock. The residue names are checked as in Rosetta nomenclature. But strangely the resulting pdb shows a missing residue, that is the first residue of both the protomers are missing.  How is it possible or how to overcome it?

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Wed, 2018-05-02 12:52

Rosetta rejects protein residues missing one of the mainchain heavy atoms - N, CA, C.  Missing residues at chain ends are often due to partly-resolved residues.  Are the backbone atoms present in the input, at non-zero occupancy?

Thu, 2018-05-03 11:45