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Fragments for short peptides using Robetta

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Fragments for short peptides using Robetta
#1

Hi, is there a way to use Robetta for creating fragments for short peptides?

Currently, there is a minimum length of 27 required.

Cheers, René

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Wed, 2018-05-16 14:21
renedominik

Having not tried this - pad it to length with AAAAAAAAAAAA, and then edit the fragments file to the "right" length by deleting all frames that go past the "real" sequence?

Wed, 2018-05-16 15:07
smlewis

Good idea, I'll give it a try, thanks!

But would it be possible to get rid of this restriction of 27AA on the server?

Fri, 2018-05-18 13:44
renedominik