If I run this command:
residue_energy_breakdown.static.linuxgccrelease -in:file:s hasDUMresidues.pdb -out:file:silent energy_breakdown.out -ignore_unrecognized_res true
on the attached pdb, I get this error:
Residue outside res_map range
It seems like Rosetta recognizes "DUM", but maybe my DUM doesn't match Rosetta's pdb_DUM? If I delete all the DUM residues, then the error goes away. I also tried deleting all but one of the DUM residues, but it still failed, making it seem like the problem isn't too many DUM residues.
Can someone give me some clarity on what exactly the problem is here?
Here's the version of Rosetta I'm using (it's labeled "3.9" on my cluster):
core.init: Rosetta version: rosetta.binary.linux.release-171 r171 2018.09+release.333d996 333d99699777cd6a50d1c1736bacd689f8f1d1df https://www.rosettacommons.org 2018-02-27T09:57:00.705373