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Calibur not listing cluster members

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Calibur not listing cluster members


I generated 10,000 structures using the rosetta CM method. I then tried to cluster them using calibur in Rosetta 3.9, build# 60072 using the command "calibur.mpi.linuxgccrelease -pdb_list pdblist.txt" but it won't display the members of each cluster. It only shows the following at the end:

Largest 2 cluster centers: S_0445_4.pdb(35), S_0001_2.pdb(28). Margin = 20.00000%

cluster = 0; center = S_0445_4.pdb; n_decoy_members = 35; members =

cluster = 1; center = S_0001_2.pdb; n_decoy_members = 28; members =

I was wondering if there was something I was doing wrong or some other way to determine the cluster members using calibur.

I've attached an abreviated version of the full output in case it might help.

Thanks in advance.

Calibur_Abbreviated.txt2.36 KB
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Sun, 2018-07-01 13:07


Did you manage to sort this? I am having the exact same problem today so wondering if you found a solution?


Sun, 2020-05-17 15:36