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crashed when loading RDC data

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crashed when loading RDC data
#1

Dear Developers

It appears that nearly all 2017 and 2018 Rosetta distributions have a crashed problem when reading the RDC data, please see below for running the demo data ($rosettaDir/demos/public/abinitio_w_chemicalshift_noe_rdc/):

core.init: Constant seed mode, seed=1111111 seed_offset=0 real_seed=1111111
core.init.random: RandomGenerator:init: Normal mode, seed=1111111 RG_type=mt19937
protocols.abinitio.AbrelaxApplication: read fasta sequence: 52 residues
GSPPEADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQYSKH
protocols.evaluation.ChiWellRmsdEvaluatorCreator: Evaluation Creator active ... 
core.chemical.GlobalResidueTypeSet: Finished initializing centroid residue type set.  Created 62 residue types
core.chemical.GlobalResidueTypeSet: Total time to initialize 0.09 seconds.
core.io.fragments: reading fragments from file: rosetta_inputs/pick_cs_fragments/frags.score.200.9mers ... 
core.io.fragments: rosetta++ fileformat detected! Calling legacy reader... 
core.fragments.ConstantLengthFragSet: finished reading top 25 9mer fragments from file rosetta_inputs/pick_cs_fragments/frags.score.200.9mers
core.io.fragments: reading fragments from file: rosetta_inputs/pick_cs_fragments/frags.score.200.3mers ... 
core.io.fragments: rosetta++ fileformat detected! Calling legacy reader... 
core.fragments.ConstantLengthFragSet: finished reading top 200 3mer fragments from file rosetta_inputs/pick_cs_fragments/frags.score.200.3mers
core.scoring.constraints.util: Constraint choice: rosetta_inputs/NOE.centroid.cst
core.scoring.constraints.ConstraintsIO: read constraints from rosetta_inputs/NOE.centroid.cst
core.scoring.constraints.ConstraintsIO: Read in 20 constraints
core.fragment: compute strand/loop fractions for 52 residues... 
protocols.abinitio.AbrelaxApplication: run FoldConstraints.....
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/env_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cbeta_den.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/pair_log.txt
basic.io.database: Database file opened: scoring/score_functions/EnvPairPotential/cenpack_log.txt
basic.io.database: Database file opened: scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth
basic.io.database: Database file opened: scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth
core.scoring: ATOM_VDW set to CENTROID_ROT_MIN
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBPoly1D.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBFadeIntervals.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/HBEval.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/DonStrength.csv
basic.io.database: Database file opened: scoring/score_functions/hbonds/ref2015_params/AccStrength.csv
core.scoring.ramachandran: shapovalov_lib::shap_rama_smooth_level of 4( aka highest_smooth ) got activated.
basic.io.database: Database file opened: scoring/score_functions/rama/shapovalov/kappa25/all.ramaProb
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.all.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.gly.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.pro.txt
basic.io.database: Database file opened: scoring/score_functions/omega/omega_ppdep.valile.txt
basic.io.database: Database file opened: scoring/score_functions/centroid_smooth/cen_rot_pair_params.txt
basic.io.database: Database file opened: scoring/score_functions/centroid_smooth/cen_rot_env_params.txt
basic.io.database: Database file opened: scoring/score_functions/centroid_smooth/cen_rot_cbeta_params.txt
basic.io.database: Database file opened: scoring/score_functions/centroid_smooth/cen_rot_pair_ang_params.txt
core.scoring.AtomVDW: Openning alternative vdw file: /usr/local/apps/rosetta/2018.21//main/database/chemical/atom_type_sets/centroid_rot//min.txt
core.scoring: ATOM_VDW set to CENTROID_ROT_MIN
core.scoring.ResidualDipolarCoupling: Reading RDC file rosetta_inputs/nh.rdc
*** Error in `/usr/local/apps/rosetta/2018.21//bin/minirosetta': free(): invalid next size (fast): 0x0000000002fe5680 ***
======= Backtrace: =========
/lib64/libc.so.6(+0x81429)[0x2b5801417429]
 

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Fri, 2018-10-26 12:34
yangshen12