You are here

Rosetta lack of necessary application

3 posts / 0 new
Last post
Rosetta lack of necessary application


    when i learn denovo_model_building from demos/public/electron_density_structure_refinement.In step 1 and step2 ,they ask for place_fragment_into_density.linuxgccrelease,  cal_overlap_score.static.linuxgccrelease,cal_nonoverlap_score.static.linuxgccrelease.In my rosetta 3.0 i can not find these application.I dont know why,thanks for help

Post Situation: 
Wed, 2018-11-07 01:13

Those applications actually shouldn't be needed anymore. The functionality has been rolled into the denovo_density application itself.

Please see  and for updated tutorials.

Thu, 2018-11-08 06:41

Thank you for your help.The file you offer i had download ,however,it mentions about denovo_density.macosclangrelease that rosetta does not exist.I use denovo_density.linuxgccrelease  instead and get some error in doing

I get all .pdb file -- 50 for each pos-- but no silent file ,which said

protocols.electron_density.DockIntoDensityMover: Have 100 total solutions after refinement
./ 13: ./ -clust_radius: not found

im sure i set -clust_radiu 3 but it seems does not work

Tue, 2018-11-13 00:41