I am reading about the Abinitio protocol to see how I can include a checkpoint file in the Abinitio flags, but i could not find any information on how to input a checkpoint file. so this is my question:
- can I input a checkpoint file into Abinitio? if i can what is the flag -in:file: ?
While reading I found something called Abinitio using the Broker. I tried to read more about how different is normal Abinitio with regards to Broker Abinitio, but I could not find the information, only the tutorial. So my second question:
- what is Abinitio using the Broker? is it supposed to be a better Abinitio? or for specific protein families (like membrain proteins)? is it a new standard?
The broker tutorial says i must have a checkpoint file and a jufo_ss file, but there are no flags for them in the options files, how are they inputed?