You are here

is it necessary to always run relax before any Rosetta

1 post / 0 new
is it necessary to always run relax before any Rosetta
#1

I performed p_mut_scan to see if certain mutants make the protein more stable. Is it absolutely necessary to run Relax (1) before running anything [2] like pmut_scan or ddg_monomer. I have already done about 6 months of work with these without Relax. Surprisingly, pmut_scan did correctly predict 2 mutants.

-> Do I have to redo everything since I did not relax the structure?

->Another question: What is the meant by "options_annealer"  section in the documentation: " By default, fixbb uses the standard annealer used" [3]

Many thanks

K

1.https://www.rosettacommons.org/docs/latest/application_documentation/structure_prediction/relax

2. https://www.rosettacommons.org/docs/latest/application_documentation/design/pmut-scan-parallel

3. https://www.rosettacommons.org/docs/latest/application_documentation/design/pmut-scan-parallel#options_annealer

Category: 
Post Situation: 
Fri, 2019-04-12 01:35
mainzer