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newbie question re pose syntax

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newbie question re pose syntax

Hello :

I am learning the basics of pyrosetta from this tutorial

but when I enter the code verbatim I get an error.

is  something wrong with the syntax they give?  trying to do this:


2.1 Exploring the Pose object To load a PDB file you have to first create an empty pose object, and then assign a PDB structure to that pose: >>my_pose = Pose() >>pose_from_pdb( my_pose, “test.pdb” )



but i get this error:



In [3]: my_pose = Pose()                                                                 

In [4]: pose_from_pdb( my_pose, "coords.pdb" )                                           
TypeError                                 Traceback (most recent call last)
<ipython-input-4-80299edb3231> in <module>
----> 1 pose_from_pdb( my_pose, "coords.pdb" )

TypeError: pose_from_pdb() takes 1 positional argument but 2 were given


Have I not set up python or pyrosetta correctly?


thank you!  - Amy





Post Situation: 
Mon, 2019-04-15 12:50
Amy F



Yes, this has indeed changed.  The version of docs you showed is a very very old version, did google pull it up? I would use the tutorials as they are much more up-to-date.


Mon, 2019-04-15 14:21

thank you!

Tue, 2019-04-16 06:29
Amy F