You are here

input file for loop modeling

2 posts / 0 new
Last post
input file for loop modeling


I want to repair my missing residues by loop modeling. As it has shown In the demos and tutorial, I should have a file like x_missing_loop.pdb

it is like main pdb file of target protein BUT it hase something called table energy pose bellow it. How I should make this table energy pose. ???? tutorial has not said anything about making this table energy pose

I have attached that input file from demos, please explain how I can make table pose energy which is under cordinations data?

3gbn_missing_loops.pdb290.44 KB
Post Situation: 
Tue, 2019-04-16 10:21

That pose energy table is a standard feature of Rosetta output. It's output primarily for information purposes. It isn't read back in when you read in a PDB into Rosetta.

The demos/tutorials examples have that table in the input structure, as the input structure came from a previous run of Rosetta. But you don't necessarily need to have that table for the loop modeling to work (and Rosetta will ignore it even if it is present.)

Tue, 2019-04-16 11:07