Quick question: Is there a way to designate edges added to a fold tree as flexible or rigid? I have searched the documentation and tutorials for awhile but can't find anything? I am referencing some of the fold tree diagrams in Protein-Protein Docking with Backbone Flexibility
Specifically, Figure 1 b. It looks like two doamins attached by a flexible linker. This would consist of 3 edges. But how does one designate that inner middle linker edge as flexible in the fold tree object?
OR, is the flexible region made up of many 1 residue edges to simulate a flexbile region?
Any help is appreciated,