I am performing de novo structure prediciton fo a 382 long protein sequence. I am using Rosetta for de novo structure prediction.
Can you please let me know, what is the best method to perfornm protein model quality assessment? I have been looking at some, like MetaMQAP,QA-RecobineIt, but these servers dont work.
Also, once I get my models from programs like DMPfold, I-Tasser, and Rosetta, what should be the next approach to choose the best model among the set of models? Thanks!