Hope everybody is doing well.
I'm just getting used to using Rosetta and would appreciate some pointers with regards to comparative modeling of metalloproteins.
I have a protein (155 amino acids) that binds to Zn. I know exactly which amino acids the zn atoms interacts with and I have 2 homologs for templates with homology in the 65% region. I've been reading this tutorial
and I can't tell if Rosetta will account for the Zn because they are in my templates or do I have to specify there are Zn atoms in certain positions separately?