Good evening, I want to use the pepspec anchor dock application and I am using the following flags file:
-pepspec :: no_prepack_prot
-pepspec :: anchor_type PRO
-pepspec :: prep_align_prot_to input / 1CKA.nopep.pdb
-s input / 1CKA.nopep.pdb
-pepspec :: ref_pdb_list input / homol.pdblist
-score :: weights pre_talaris_2013_standard.wts
-pepspec :: soft_wts soft_rep.wts
-pepspec :: interface_cutoff 6
-pepspec :: n_dock_loop 1
-pepspec :: homol_csts
-pepspec :: n_peptides 1
This is the same one that was in test, I only changed the test structures for my own, when I run the protocol in the terminal, I get the following error:
AN INTERNAL ERROR HAS OCCURED. PLEASE SEE THE CONTENTS OF ROSETTA_CRASH.log FOR DETAILS.
terminate called after throwing an instance of 'std :: bad_alloc'
what (): std :: bad_alloc
Aborted ('core' generated)
I've been checking rosetta_crash.log but I can't really understand the error, what could I do?