dear Rosetta,
When I try to intergrate rosetta with phenix, I recieve follow issues:
rosetta.build_phenix_interface nproc=8
Substituting phenix.python into build shell scripts
update_options.sh
update_ResidueType_enum_files.sh
Phenix modules found : /usr/local/phenix-1.18.2-3874/modules/phenix
Traceback (most recent call last):
File "/usr/local/phenix-1.18.2-3874/build/../modules/phenix/phenix/command_line/rosetta_build_phenix_interface.py", line 268, in <module>
run(sys.argv[1:])
File "/usr/local/phenix-1.18.2-3874/build/../modules/phenix/phenix/command_line/rosetta_build_phenix_interface.py", line 228, in run
f=file("dispatcher_include_erraser.sh", "wb")
IOError: [Errno 13] Permission denied: 'dispatcher_include_erraser.sh'
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My steps are following:
1: rosetta has been installed sucessfully(I try abinito turiol)
2: I install the phenix 1.18
3: I open the terminal ,exprot PHENIX_ROSETTA_PATH and ROSETTA3_DB, and I check use command echo $
4: I copy the site.settings file
to ${PHENIX_ROSETTA_PATH}/main/source/tools/build/site.settings
5: then I type the command rosetta.build_phenix_interface nproc=8,then error.
How can I solve it?
hello,
the error:
means you are unable to write the file due to your os's permissions.
I'm not sure what directory you're installing in, but I would you can either install under your /home directory instead of /usr
or, you could run your command as root via the following (less recommended)