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PDB Clustering

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PDB Clustering
#1

Hello,

I was working on homology modeling and built 1000 models with ligands. I'm planning to select 100 top scored models and do clustering on them.

I tried cluster.linuxgccrelease, but the program didn't recognize the ligand. I specified the option -exclude_res, but it didn't work. 

I also tried calibur.linuxgccrelease, but there are a lot of warnings instead of the output.

I'm attaching the log files. Can you help me with these issues? Thank you in advance!

 

AttachmentSize
cluster.log6.2 KB
ROSETTA_CRASH.log5.49 KB
calibur.log41.92 KB
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Post Situation: 
Mon, 2021-04-05 10:40
code_Monkey