You are here

farfar2 error

2 posts / 0 new
Last post
farfar2 error


I am trying to model a 514-nt long RNA structure using farfar2. My job failed with the following error

ERROR: Not complementary at positions A    8 and U   13

I do not understand this, A and U are complementary  and I have checked both the input sequence and dot bracket files and I dont see any discrepancies. Attaching both inputs and the Rosie crash log file. Could someone please help me sort the error.

Thank you

seq_fasta.txt534 bytes
dotbracket.txt515 bytes
Post Situation: 
Thu, 2021-10-07 23:10

The sequence has to be lowercase. (Since Rosetta supports protein modeling too, in a sequence A indicates alanine.)

Fri, 2021-10-08 10:29