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FARFAR2 - Extra Minimize Hangs on Submittal

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FARFAR2 - Extra Minimize Hangs on Submittal


I have attempted several times to start a new FARFAR2 run that uses one or two template PDBs for homology modeling. This seems to work well with default settings, but I need to supply data in the "Residues for 'extra' minimization" text field to relax the homology model near its endpoints.  When I include data in this field, it causes the popup "Submitting FARFAR2 job..." to display indefinitely. I waited overnight to see if this was just slowing things down quite a bit, but no success. 

In terms of syntax of the text input, I am using the chain ID with a colon, the NT range without spaces and a single hyphen in the middle of the range. For example:


I tried this with and without quotation marks per the "format as" instructions on the job submit page. 

Related feature request - it would be great to have the standalone RNA_minimize application available on the Rosie server. 

Thank you for your help!

Post Situation: 
Thu, 2022-06-16 09:41