# shape complementarity

2 posts / 0 new
shape complementarity
#1

I am using the shape complementarity filter to evaluate noncanonical amino acids. For several noncanonicals that contain Chlorine and Fluorine atoms the sc value is -1. I suspect this is due to the code for sc not being compatible with atom types that are not C,N,O,S,and P. Does anyone have a solution or suggestion on how to get sc updated to work with all NCAA's?

Post Situation:
Fri, 2022-07-15 13:24
holdenj

There's a use_rosetta_radii option on the ShapeComplementarity filter. If you set that to true, it will use the same radii as used for the LJ potential (fa_atr & fa_rep). This might give slightly different results for proteins with only the 20 canonical amino acids, but it should support any structure which Rosetta is able to support.

Fri, 2022-07-15 13:50
rmoretti