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No values for total score while running Rosetta score file.

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No values for total score while running Rosetta score file.

I am running the Rosetta version - rosetta.source.release-334.tar.bz2 for designing two proteins but no values are generated for the total score. All the important files regarding this are attached. Please look at it and help me with this. 

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Wed, 2023-02-01 02:05
Shweata Maurya

Here, I have uploaded two more files that can be useful for resolving this query. My query is that no values are generated for the total score, while the rest of the values like rms, ddg_binding, and sasa values are acceptable. Please help me with this.

Thank you!

Wed, 2023-02-01 02:42
Shweata Maurya

You are probably going to have to supply the *.pdb file inputs: use.pdb and template.pdb so they/we can run it as well.  Might also need to give the protocol file too.  Is this a default protocol xml or did you obtain it from somwhere, or did you just write yourself?  I am interested to see it since I am learning the ins and outs of Rosetta :)

Wed, 2023-02-01 14:29
Brian Wiley

Dear Brain,

Thank you for your reply.

Here, I am attaching the protocol file which I obtained from my senior who had it for a similar kind of input in a different cluster (Rosetta version 3.9). I converted the tandem.xml to tandem.txt file because xml file type can not be uploaded here. Due to file size limitations and type restrictions, I am unable to share all of the files you required. So, could you please share your email so that I can share all the files? 

Thank you!


Thu, 2023-02-02 01:38
Shweata Maurya

I am unable to solve this problem by myself. I am wondering if you get time to solve this then please let me know.

Please have a look at this query and help me out.

Thank you!


Wed, 2023-02-08 03:19
Shweata Maurya