Hi I'm trying to fill the missing loop with remodel.linuxgccrelease in rosetta
for some pdb, there's no problem in filling missing loop
but I got following error with certain PDB
core.fragment.picking_old.vall.vall_io: Added 62471 sections to library totaling 1400124 residues.
core.fragment.picking_old.vall.eval.IdentityEval: ss = LLLLLLL | aa = .......
core.fragment.picking_old.vall.eval.ABEGOEval: abego = LLLLLLL
core.sequence.ABEGOManager: [ ERROR ] Unrecognized abego index: L
ERROR: Unrecognized abego
ERROR:: Exit from: src/core/sequence/ABEGOManager.cc line: 408
protocols.jd2.JobDistributor: [ ERROR ]
[ERROR] Exception caught by JobDistributor for job PTPRB_2i5xB_UA5_0001
I searched a lot in google , but I couldn't figure out what 'Unrecognized abego index: L' means
Does anybody know how to figure out this problem?
Attached files are:
input PDB : PTPRB_2i5xB_UA5.pdb
blueprint file : PTPRB_2i5xB_UA5.remodel
flag file for remodel run : flags
log file : log_PTPRB_2i5x
command line : remodel.linuxgccrelease @flags
flags file look like following