I am looking for the quickest way for __crude__ (re)constructing full atom decoys (backbone + side chains) from the silent format file.
Lets say I have generated silent file using -silent rosetta flag and now I want to get all full atoms decoys in PDB format (with crude reconstruction of side chain).
I have tried several approaches but: rosetta -extract gives only the backbone. -relax takes too long. -loops could work but requires additional input files.
Is there any dedicated protocol?