I am completely new to rosetta , hope some some would help me for ab initio modeling .
rosetta.gcc aa 2ptl _ -nstruct 1 -paths ../2ptl/paths.txt > abinitio.log
here some one can explain me what is "aa" and apti_(probably fasta file)
I am not sure about paths.txt which expects to provide parameters for
pdb1, pdb2 starting strcture and status, fragment file like that
but i do not have any starting structure or any other reference structure
suggest me how to specify these parameters
If any one having sample abinitio paths.txt file please pass me.