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error running rosetta3.0

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error running rosetta3.0
#1

Hi, I am new to Rosetta. I downloaded and built Rosetta3.0 today with the supplied scons.py script. It finished without any errors. Afterwards, I tried running AbinitioRelax.linuxgccrelease and I got the following error:

error while loading shared libraries: libprotocols.so: cannot open shared object file: No such file or directory

I'm not sure if this is a dependency issue or maybe I don't have full permissions to those libraries (I just built this locally in my home directory). I am not the most linux savvy person out there, so maybe this is a relatively easy thing to fix. I noticed someone had this same problem (was posted in the other section) and no one was able to help.

Any ideas would be helpful. Thanks.

Wed, 2009-06-10 13:57
aschoenr

> Hi, I am new to Rosetta. I downloaded and built Rosetta3.0 today with the supplied scons.py script. It finished without any errors. Afterwards, I tried running AbinitioRelax.linuxgccrelease and I got the following error:
>
> error while loading shared libraries: libprotocols.so: cannot open shared object file: No such file or directory
>
> I'm not sure if this is a dependency issue or maybe I don't have full permissions to those libraries (I just built this locally in my home directory). I am not the most linux savvy person out there, so maybe this is a relatively easy thing to fix. I noticed someone had this same problem (was posted in the other section) and no one was able to help.
>
> Any ideas would be helpful. Thanks.

I think your problem is it can't find libprotocols.so because it is not in the shared library path.

I solved this by adding to my .bashrc file:

LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/data/home/apps/rosetta3/rosetta3_source/build/src/release/linux/2.6/64/x86/gcc

export LD_LIBRARY_PATH

of course you would have to change the path /data/home/apps/rosetta3/rosetta3_source/ to where you have installed rosetta on your system.

Fri, 2009-06-12 02:51
jtmacd